Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS03315 and EX31_RS03320 are separated by 1 nucleotides EX31_RS03320 and EX31_RS03325 overlap by 4 nucleotides EX31_RS03325 and EX31_RS03330 are separated by 262 nucleotides
EX31_RS03315: EX31_RS03315 - type VI secretion system tube protein Hcp, at 153,635 to 154,126
_RS03315
EX31_RS03320: EX31_RS03320 - hypothetical protein, at 154,128 to 154,628
_RS03320
EX31_RS03325: EX31_RS03325 - DUF2778 domain-containing protein, at 154,625 to 154,984
_RS03325
EX31_RS03330: EX31_RS03330 - hypoxanthine phosphoribosyltransferase, at 155,247 to 155,783
_RS03330
Position (kb) 154
155 Strain fitness (log2 ratio) -2
-1
0
1 at 153.632 kb on + strand at 153.633 kb on - strand at 153.636 kb on + strand at 153.637 kb on - strand at 153.676 kb on + strand at 153.677 kb on - strand at 153.817 kb on + strand, within EX31_RS03315 at 153.818 kb on - strand, within EX31_RS03315 at 153.818 kb on - strand, within EX31_RS03315 at 153.907 kb on + strand, within EX31_RS03315 at 153.908 kb on - strand, within EX31_RS03315 at 153.916 kb on - strand, within EX31_RS03315 at 154.007 kb on - strand, within EX31_RS03315 at 154.010 kb on + strand, within EX31_RS03315 at 154.066 kb on + strand, within EX31_RS03315 at 154.066 kb on + strand, within EX31_RS03315 at 154.081 kb on + strand at 154.081 kb on + strand at 154.108 kb on + strand at 154.130 kb on - strand at 154.130 kb on - strand at 154.175 kb on + strand at 154.178 kb on + strand, within EX31_RS03320 at 154.208 kb on + strand, within EX31_RS03320 at 154.235 kb on + strand, within EX31_RS03320 at 154.235 kb on + strand, within EX31_RS03320 at 154.236 kb on - strand, within EX31_RS03320 at 154.236 kb on - strand, within EX31_RS03320 at 154.237 kb on + strand, within EX31_RS03320 at 154.237 kb on + strand, within EX31_RS03320 at 154.238 kb on - strand, within EX31_RS03320 at 154.238 kb on - strand, within EX31_RS03320 at 154.267 kb on + strand, within EX31_RS03320 at 154.267 kb on + strand, within EX31_RS03320 at 154.267 kb on + strand, within EX31_RS03320 at 154.268 kb on - strand, within EX31_RS03320 at 154.268 kb on - strand, within EX31_RS03320 at 154.284 kb on + strand, within EX31_RS03320 at 154.306 kb on - strand, within EX31_RS03320 at 154.320 kb on - strand, within EX31_RS03320 at 154.346 kb on + strand, within EX31_RS03320 at 154.347 kb on - strand, within EX31_RS03320 at 154.374 kb on - strand, within EX31_RS03320 at 154.456 kb on - strand, within EX31_RS03320 at 154.471 kb on + strand, within EX31_RS03320 at 154.471 kb on + strand, within EX31_RS03320 at 154.471 kb on + strand, within EX31_RS03320 at 154.471 kb on + strand, within EX31_RS03320 at 154.471 kb on + strand, within EX31_RS03320 at 154.472 kb on - strand, within EX31_RS03320 at 154.472 kb on - strand, within EX31_RS03320 at 154.472 kb on - strand, within EX31_RS03320 at 154.472 kb on - strand, within EX31_RS03320 at 154.472 kb on - strand, within EX31_RS03320 at 154.472 kb on - strand, within EX31_RS03320 at 154.472 kb on - strand, within EX31_RS03320 at 154.472 kb on - strand, within EX31_RS03320 at 154.498 kb on + strand, within EX31_RS03320 at 154.564 kb on - strand, within EX31_RS03320 at 154.768 kb on + strand, within EX31_RS03325 at 154.769 kb on - strand, within EX31_RS03325 at 154.769 kb on - strand, within EX31_RS03325 at 154.835 kb on - strand, within EX31_RS03325 at 154.895 kb on + strand, within EX31_RS03325 at 154.916 kb on - strand, within EX31_RS03325 at 155.089 kb on - strand at 155.092 kb on + strand at 155.093 kb on - strand at 155.180 kb on - strand at 155.194 kb on + strand at 155.194 kb on + strand at 155.279 kb on - strand at 155.357 kb on - strand, within EX31_RS03330 at 155.367 kb on + strand, within EX31_RS03330 at 155.639 kb on + strand, within EX31_RS03330 at 155.640 kb on - strand, within EX31_RS03330 at 155.640 kb on - strand, within EX31_RS03330 at 155.793 kb on - strand at 155.816 kb on - strand at 155.847 kb on + strand at 155.847 kb on + strand at 155.847 kb on + strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.848 kb on - strand at 155.860 kb on + strand at 155.860 kb on + strand at 155.861 kb on - strand at 155.861 kb on - strand at 155.861 kb on - strand at 155.861 kb on - strand at 155.861 kb on - strand at 155.863 kb on - strand at 155.884 kb on + strand at 155.935 kb on - strand at 155.935 kb on - strand at 155.938 kb on + strand at 155.938 kb on + strand at 155.938 kb on + strand at 155.978 kb on + strand at 155.979 kb on - strand at 155.979 kb on - strand at 155.982 kb on + strand at 155.983 kb on - strand at 155.983 kb on - strand at 155.983 kb on - strand at 155.983 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 153,632 + -2.7 153,633 - -1.6 153,636 + -0.2 153,637 - +0.2 153,676 + +0.9 153,677 - +0.4 153,817 + EX31_RS03315 0.37 -2.3 153,818 - EX31_RS03315 0.37 +1.7 153,818 - EX31_RS03315 0.37 -0.9 153,907 + EX31_RS03315 0.55 -0.6 153,908 - EX31_RS03315 0.55 -1.1 153,916 - EX31_RS03315 0.57 -0.4 154,007 - EX31_RS03315 0.76 +0.8 154,010 + EX31_RS03315 0.76 +0.3 154,066 + EX31_RS03315 0.88 -1.0 154,066 + EX31_RS03315 0.88 -0.5 154,081 + -0.2 154,081 + -0.7 154,108 + -0.7 154,130 - -0.3 154,130 - +1.0 154,175 + -0.1 154,178 + EX31_RS03320 0.10 -0.4 154,208 + EX31_RS03320 0.16 -0.2 154,235 + EX31_RS03320 0.21 -1.3 154,235 + EX31_RS03320 0.21 +0.2 154,236 - EX31_RS03320 0.22 +0.4 154,236 - EX31_RS03320 0.22 +0.7 154,237 + EX31_RS03320 0.22 -0.3 154,237 + EX31_RS03320 0.22 +0.0 154,238 - EX31_RS03320 0.22 -0.5 154,238 - EX31_RS03320 0.22 +0.2 154,267 + EX31_RS03320 0.28 +0.4 154,267 + EX31_RS03320 0.28 -0.8 154,267 + EX31_RS03320 0.28 +0.8 154,268 - EX31_RS03320 0.28 -0.9 154,268 - EX31_RS03320 0.28 -1.5 154,284 + EX31_RS03320 0.31 +1.7 154,306 - EX31_RS03320 0.36 -0.2 154,320 - EX31_RS03320 0.38 +0.5 154,346 + EX31_RS03320 0.44 -0.1 154,347 - EX31_RS03320 0.44 +0.0 154,374 - EX31_RS03320 0.49 -2.5 154,456 - EX31_RS03320 0.65 -0.4 154,471 + EX31_RS03320 0.68 -0.1 154,471 + EX31_RS03320 0.68 +0.2 154,471 + EX31_RS03320 0.68 -0.2 154,471 + EX31_RS03320 0.68 -1.2 154,471 + EX31_RS03320 0.68 -0.6 154,472 - EX31_RS03320 0.69 +0.2 154,472 - EX31_RS03320 0.69 -0.0 154,472 - EX31_RS03320 0.69 +1.0 154,472 - EX31_RS03320 0.69 +0.3 154,472 - EX31_RS03320 0.69 -2.4 154,472 - EX31_RS03320 0.69 -0.5 154,472 - EX31_RS03320 0.69 -0.7 154,472 - EX31_RS03320 0.69 -0.3 154,498 + EX31_RS03320 0.74 +0.1 154,564 - EX31_RS03320 0.87 -1.2 154,768 + EX31_RS03325 0.40 +0.2 154,769 - EX31_RS03325 0.40 -0.2 154,769 - EX31_RS03325 0.40 +0.9 154,835 - EX31_RS03325 0.58 -0.3 154,895 + EX31_RS03325 0.75 -0.6 154,916 - EX31_RS03325 0.81 -1.8 155,089 - -1.7 155,092 + +1.0 155,093 - +0.5 155,180 - -1.9 155,194 + -0.2 155,194 + -1.3 155,279 - -0.4 155,357 - EX31_RS03330 0.20 -0.7 155,367 + EX31_RS03330 0.22 -1.1 155,639 + EX31_RS03330 0.73 -1.0 155,640 - EX31_RS03330 0.73 -0.7 155,640 - EX31_RS03330 0.73 +1.3 155,793 - +0.1 155,816 - -0.5 155,847 + -0.3 155,847 + +0.8 155,847 + +0.7 155,848 - +0.0 155,848 - -0.0 155,848 - +0.5 155,848 - -0.4 155,848 - +0.7 155,848 - +0.6 155,848 - +0.6 155,848 - -0.3 155,848 - +0.2 155,848 - -0.6 155,848 - -0.3 155,848 - -0.7 155,860 + -0.2 155,860 + +0.9 155,861 - +0.1 155,861 - -2.0 155,861 - -0.0 155,861 - +1.0 155,861 - -1.7 155,863 - -0.2 155,884 + -0.3 155,935 - -0.2 155,935 - +0.0 155,938 + -1.0 155,938 + +0.6 155,938 + +0.8 155,978 + -0.8 155,979 - -0.3 155,979 - +0.1 155,982 + -0.9 155,983 - +0.2 155,983 - +0.3 155,983 - -1.1 155,983 - -0.2
Or see this region's nucleotide sequence