Strain Fitness in Rahnella sp. WP5 around EX31_RS02960

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS02950 and EX31_RS02955 overlap by 4 nucleotidesEX31_RS02955 and EX31_RS02960 are separated by 74 nucleotidesEX31_RS02960 and EX31_RS02965 are separated by 288 nucleotides EX31_RS02950: EX31_RS02950 - hypothetical protein, at 70,634 to 71,377 _RS02950 EX31_RS02955: EX31_RS02955 - YjbF family lipoprotein, at 71,374 to 72,030 _RS02955 EX31_RS02960: EX31_RS02960 - hypothetical protein, at 72,105 to 72,320 _RS02960 EX31_RS02965: EX31_RS02965 - EAL domain-containing protein, at 72,609 to 73,295 _RS02965 Position (kb) 72 73Strain fitness (log2 ratio) -2 -1 0 1 2at 71.148 kb on + strand, within EX31_RS02950at 71.148 kb on + strand, within EX31_RS02950at 71.149 kb on - strand, within EX31_RS02950at 71.149 kb on - strand, within EX31_RS02950at 71.254 kb on + strand, within EX31_RS02950at 71.254 kb on + strand, within EX31_RS02950at 71.254 kb on + strand, within EX31_RS02950at 71.254 kb on + strand, within EX31_RS02950at 71.255 kb on - strand, within EX31_RS02950at 71.255 kb on - strand, within EX31_RS02950at 71.255 kb on - strand, within EX31_RS02950at 71.257 kb on + strand, within EX31_RS02950at 71.257 kb on + strand, within EX31_RS02950at 71.258 kb on - strand, within EX31_RS02950at 71.302 kb on - strand, within EX31_RS02950at 71.358 kb on - strandat 71.370 kb on - strandat 71.419 kb on - strandat 71.419 kb on - strandat 71.430 kb on + strandat 71.464 kb on + strand, within EX31_RS02955at 71.465 kb on - strand, within EX31_RS02955at 71.784 kb on + strand, within EX31_RS02955at 71.785 kb on - strand, within EX31_RS02955at 71.785 kb on - strand, within EX31_RS02955at 71.789 kb on - strand, within EX31_RS02955at 71.789 kb on - strand, within EX31_RS02955at 71.834 kb on + strand, within EX31_RS02955at 71.862 kb on + strand, within EX31_RS02955at 71.863 kb on - strand, within EX31_RS02955at 71.863 kb on - strand, within EX31_RS02955at 71.876 kb on + strand, within EX31_RS02955at 71.895 kb on + strand, within EX31_RS02955at 71.952 kb on + strand, within EX31_RS02955at 71.953 kb on - strand, within EX31_RS02955at 71.995 kb on + strandat 71.996 kb on - strandat 72.042 kb on + strandat 72.042 kb on + strandat 72.043 kb on - strandat 72.045 kb on - strandat 72.053 kb on + strandat 72.054 kb on - strandat 72.054 kb on - strandat 72.094 kb on + strandat 72.104 kb on - strandat 72.104 kb on - strandat 72.107 kb on - strandat 72.134 kb on + strand, within EX31_RS02960at 72.158 kb on + strand, within EX31_RS02960at 72.167 kb on + strand, within EX31_RS02960at 72.168 kb on - strand, within EX31_RS02960at 72.172 kb on - strand, within EX31_RS02960at 72.172 kb on - strand, within EX31_RS02960at 72.172 kb on - strand, within EX31_RS02960at 72.172 kb on - strand, within EX31_RS02960at 72.271 kb on + strand, within EX31_RS02960at 72.271 kb on + strand, within EX31_RS02960at 72.273 kb on + strand, within EX31_RS02960at 72.274 kb on - strand, within EX31_RS02960at 72.324 kb on + strandat 72.381 kb on + strandat 72.382 kb on - strandat 72.400 kb on + strandat 72.422 kb on - strandat 72.425 kb on + strandat 72.425 kb on + strandat 72.430 kb on + strandat 72.434 kb on + strandat 72.477 kb on + strandat 72.519 kb on - strandat 72.564 kb on + strandat 72.569 kb on - strandat 72.581 kb on + strandat 72.625 kb on - strandat 72.641 kb on + strandat 72.668 kb on + strandat 72.690 kb on + strand, within EX31_RS02965at 72.732 kb on - strand, within EX31_RS02965at 72.745 kb on + strand, within EX31_RS02965at 72.746 kb on - strand, within EX31_RS02965at 72.822 kb on + strand, within EX31_RS02965at 72.825 kb on - strand, within EX31_RS02965at 72.826 kb on + strand, within EX31_RS02965at 72.827 kb on - strand, within EX31_RS02965at 72.854 kb on + strand, within EX31_RS02965at 72.909 kb on + strand, within EX31_RS02965at 72.978 kb on + strand, within EX31_RS02965at 72.978 kb on + strand, within EX31_RS02965at 72.978 kb on + strand, within EX31_RS02965at 72.979 kb on - strand, within EX31_RS02965at 72.979 kb on - strand, within EX31_RS02965at 72.979 kb on - strand, within EX31_RS02965at 72.979 kb on - strand, within EX31_RS02965at 72.979 kb on - strand, within EX31_RS02965at 72.980 kb on + strand, within EX31_RS02965at 72.980 kb on + strand, within EX31_RS02965at 72.980 kb on + strand, within EX31_RS02965at 72.980 kb on + strand, within EX31_RS02965at 72.980 kb on + strand, within EX31_RS02965at 72.982 kb on + strand, within EX31_RS02965at 72.982 kb on + strand, within EX31_RS02965at 72.982 kb on + strand, within EX31_RS02965at 72.983 kb on - strand, within EX31_RS02965at 72.983 kb on - strand, within EX31_RS02965at 73.029 kb on - strand, within EX31_RS02965at 73.046 kb on - strand, within EX31_RS02965at 73.088 kb on + strand, within EX31_RS02965at 73.089 kb on - strand, within EX31_RS02965at 73.089 kb on - strand, within EX31_RS02965at 73.089 kb on - strand, within EX31_RS02965at 73.159 kb on - strand, within EX31_RS02965at 73.178 kb on - strand, within EX31_RS02965at 73.227 kb on + strandat 73.228 kb on - strandat 73.315 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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71,148 + EX31_RS02950 0.69 +0.8
71,148 + EX31_RS02950 0.69 +0.3
71,149 - EX31_RS02950 0.69 -0.5
71,149 - EX31_RS02950 0.69 -0.4
71,254 + EX31_RS02950 0.83 +1.4
71,254 + EX31_RS02950 0.83 +1.8
71,254 + EX31_RS02950 0.83 +0.7
71,254 + EX31_RS02950 0.83 +0.1
71,255 - EX31_RS02950 0.83 +0.6
71,255 - EX31_RS02950 0.83 -1.2
71,255 - EX31_RS02950 0.83 +0.5
71,257 + EX31_RS02950 0.84 -0.4
71,257 + EX31_RS02950 0.84 -0.2
71,258 - EX31_RS02950 0.84 -0.5
71,302 - EX31_RS02950 0.90 -0.3
71,358 - -0.4
71,370 - +0.7
71,419 - -0.3
71,419 - -0.5
71,430 + -0.3
71,464 + EX31_RS02955 0.14 -0.5
71,465 - EX31_RS02955 0.14 +0.1
71,784 + EX31_RS02955 0.62 -0.1
71,785 - EX31_RS02955 0.63 +0.1
71,785 - EX31_RS02955 0.63 +0.4
71,789 - EX31_RS02955 0.63 +0.1
71,789 - EX31_RS02955 0.63 +0.8
71,834 + EX31_RS02955 0.70 +0.3
71,862 + EX31_RS02955 0.74 -1.0
71,863 - EX31_RS02955 0.74 +0.3
71,863 - EX31_RS02955 0.74 +0.1
71,876 + EX31_RS02955 0.76 +0.6
71,895 + EX31_RS02955 0.79 +0.3
71,952 + EX31_RS02955 0.88 -0.1
71,953 - EX31_RS02955 0.88 +0.9
71,995 + -0.3
71,996 - -0.3
72,042 + -1.0
72,042 + -0.1
72,043 - -0.4
72,045 - +0.7
72,053 + -0.4
72,054 - -0.5
72,054 - -0.9
72,094 + +0.2
72,104 - +0.3
72,104 - -0.2
72,107 - +0.4
72,134 + EX31_RS02960 0.13 +0.5
72,158 + EX31_RS02960 0.25 +0.2
72,167 + EX31_RS02960 0.29 -0.6
72,168 - EX31_RS02960 0.29 +0.6
72,172 - EX31_RS02960 0.31 +0.8
72,172 - EX31_RS02960 0.31 -0.4
72,172 - EX31_RS02960 0.31 +0.7
72,172 - EX31_RS02960 0.31 -0.9
72,271 + EX31_RS02960 0.77 +1.8
72,271 + EX31_RS02960 0.77 +2.0
72,273 + EX31_RS02960 0.78 +0.2
72,274 - EX31_RS02960 0.78 +0.1
72,324 + +0.1
72,381 + +0.0
72,382 - -0.3
72,400 + -0.2
72,422 - +0.6
72,425 + -1.7
72,425 + -0.7
72,430 + -1.3
72,434 + -0.3
72,477 + +0.4
72,519 - -1.2
72,564 + +1.0
72,569 - -1.5
72,581 + -0.3
72,625 - -0.3
72,641 + -0.5
72,668 + -0.1
72,690 + EX31_RS02965 0.12 +0.8
72,732 - EX31_RS02965 0.18 -1.8
72,745 + EX31_RS02965 0.20 +0.5
72,746 - EX31_RS02965 0.20 -2.1
72,822 + EX31_RS02965 0.31 -0.0
72,825 - EX31_RS02965 0.31 -2.1
72,826 + EX31_RS02965 0.32 +0.6
72,827 - EX31_RS02965 0.32 +0.5
72,854 + EX31_RS02965 0.36 -0.4
72,909 + EX31_RS02965 0.44 -0.9
72,978 + EX31_RS02965 0.54 +0.8
72,978 + EX31_RS02965 0.54 -0.1
72,978 + EX31_RS02965 0.54 -0.0
72,979 - EX31_RS02965 0.54 -0.3
72,979 - EX31_RS02965 0.54 +0.1
72,979 - EX31_RS02965 0.54 -0.5
72,979 - EX31_RS02965 0.54 -0.3
72,979 - EX31_RS02965 0.54 -0.5
72,980 + EX31_RS02965 0.54 -0.6
72,980 + EX31_RS02965 0.54 -0.6
72,980 + EX31_RS02965 0.54 +0.9
72,980 + EX31_RS02965 0.54 +0.3
72,980 + EX31_RS02965 0.54 +0.1
72,982 + EX31_RS02965 0.54 -0.1
72,982 + EX31_RS02965 0.54 -0.4
72,982 + EX31_RS02965 0.54 -0.6
72,983 - EX31_RS02965 0.54 +1.2
72,983 - EX31_RS02965 0.54 +1.1
73,029 - EX31_RS02965 0.61 +0.7
73,046 - EX31_RS02965 0.64 +0.5
73,088 + EX31_RS02965 0.70 -0.6
73,089 - EX31_RS02965 0.70 -0.9
73,089 - EX31_RS02965 0.70 -0.8
73,089 - EX31_RS02965 0.70 -0.5
73,159 - EX31_RS02965 0.80 -0.3
73,178 - EX31_RS02965 0.83 -0.5
73,227 + +0.3
73,228 - -0.8
73,315 - -1.1

Or see this region's nucleotide sequence