Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02910 and EX31_RS02915 are separated by 75 nucleotides EX31_RS02915 and EX31_RS02920 are separated by 25 nucleotides
EX31_RS02910: EX31_RS02910 - hypothetical protein, at 59,516 to 60,754
_RS02910
EX31_RS02915: EX31_RS02915 - glycosyltransferase family 4 protein, at 60,830 to 61,813
_RS02915
EX31_RS02920: EX31_RS02920 - glycosyltransferase, at 61,839 to 62,996
_RS02920
Position (kb) 60
61
62 Strain fitness (log2 ratio) -2
-1
0
1
2 at 59.873 kb on + strand, within EX31_RS02910 at 59.895 kb on - strand, within EX31_RS02910 at 59.927 kb on - strand, within EX31_RS02910 at 59.967 kb on - strand, within EX31_RS02910 at 59.971 kb on + strand, within EX31_RS02910 at 60.020 kb on - strand, within EX31_RS02910 at 60.096 kb on - strand, within EX31_RS02910 at 60.157 kb on - strand, within EX31_RS02910 at 60.458 kb on - strand, within EX31_RS02910 at 60.467 kb on - strand, within EX31_RS02910 at 60.471 kb on + strand, within EX31_RS02910 at 60.471 kb on + strand, within EX31_RS02910 at 60.565 kb on - strand, within EX31_RS02910 at 60.569 kb on - strand, within EX31_RS02910 at 60.620 kb on - strand, within EX31_RS02910 at 60.791 kb on - strand at 61.045 kb on + strand, within EX31_RS02915 at 61.046 kb on - strand, within EX31_RS02915 at 61.138 kb on - strand, within EX31_RS02915 at 61.138 kb on - strand, within EX31_RS02915 at 61.146 kb on - strand, within EX31_RS02915 at 61.162 kb on + strand, within EX31_RS02915 at 61.208 kb on - strand, within EX31_RS02915 at 61.357 kb on + strand, within EX31_RS02915 at 61.360 kb on - strand, within EX31_RS02915 at 61.360 kb on - strand, within EX31_RS02915 at 61.480 kb on + strand, within EX31_RS02915 at 61.516 kb on + strand, within EX31_RS02915 at 61.517 kb on - strand, within EX31_RS02915 at 61.517 kb on - strand, within EX31_RS02915 at 61.562 kb on + strand, within EX31_RS02915 at 61.563 kb on - strand, within EX31_RS02915 at 61.591 kb on + strand, within EX31_RS02915 at 61.591 kb on + strand, within EX31_RS02915 at 62.429 kb on - strand, within EX31_RS02920 at 62.433 kb on - strand, within EX31_RS02920 at 62.433 kb on - strand, within EX31_RS02920 at 62.644 kb on - strand, within EX31_RS02920
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 59,873 + EX31_RS02910 0.29 +0.2 59,895 - EX31_RS02910 0.31 +0.6 59,927 - EX31_RS02910 0.33 -0.6 59,967 - EX31_RS02910 0.36 +0.6 59,971 + EX31_RS02910 0.37 +1.1 60,020 - EX31_RS02910 0.41 +0.5 60,096 - EX31_RS02910 0.47 +0.3 60,157 - EX31_RS02910 0.52 +0.5 60,458 - EX31_RS02910 0.76 +0.2 60,467 - EX31_RS02910 0.77 +0.8 60,471 + EX31_RS02910 0.77 +0.6 60,471 + EX31_RS02910 0.77 +0.9 60,565 - EX31_RS02910 0.85 -0.1 60,569 - EX31_RS02910 0.85 +0.8 60,620 - EX31_RS02910 0.89 -2.3 60,791 - -1.2 61,045 + EX31_RS02915 0.22 -1.1 61,046 - EX31_RS02915 0.22 +0.6 61,138 - EX31_RS02915 0.31 +0.8 61,138 - EX31_RS02915 0.31 +0.3 61,146 - EX31_RS02915 0.32 +0.6 61,162 + EX31_RS02915 0.34 +1.8 61,208 - EX31_RS02915 0.38 -2.1 61,357 + EX31_RS02915 0.54 +0.4 61,360 - EX31_RS02915 0.54 -0.6 61,360 - EX31_RS02915 0.54 +0.7 61,480 + EX31_RS02915 0.66 +0.7 61,516 + EX31_RS02915 0.70 -0.5 61,517 - EX31_RS02915 0.70 +0.7 61,517 - EX31_RS02915 0.70 +0.4 61,562 + EX31_RS02915 0.74 -0.0 61,563 - EX31_RS02915 0.74 +1.1 61,591 + EX31_RS02915 0.77 -1.0 61,591 + EX31_RS02915 0.77 -0.1 62,429 - EX31_RS02920 0.51 +0.6 62,433 - EX31_RS02920 0.51 -0.3 62,433 - EX31_RS02920 0.51 -0.1 62,644 - EX31_RS02920 0.70 -2.3
Or see this region's nucleotide sequence