Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02145 and EX31_RS02150 are separated by 197 nucleotides EX31_RS02150 and EX31_RS02155 are separated by 69 nucleotides
EX31_RS02145: EX31_RS02145 - methionine synthase, at 468,051 to 469,082
_RS02145
EX31_RS02150: EX31_RS02150 - YceI family protein, at 469,280 to 469,840
_RS02150
EX31_RS02155: EX31_RS02155 - HD domain-containing protein, at 469,910 to 471,040
_RS02155
Position (kb) 469
470 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 468.420 kb on - strand, within EX31_RS02145 at 468.467 kb on + strand, within EX31_RS02145 at 468.475 kb on - strand, within EX31_RS02145 at 468.486 kb on + strand, within EX31_RS02145 at 468.487 kb on - strand, within EX31_RS02145 at 468.488 kb on + strand, within EX31_RS02145 at 468.488 kb on + strand, within EX31_RS02145 at 469.036 kb on + strand at 469.036 kb on + strand at 469.036 kb on + strand at 469.036 kb on + strand at 469.036 kb on + strand at 469.036 kb on + strand at 469.037 kb on - strand at 469.037 kb on - strand at 469.037 kb on - strand at 469.037 kb on - strand at 469.105 kb on + strand at 469.173 kb on + strand at 469.173 kb on + strand at 469.173 kb on + strand at 469.174 kb on - strand at 469.174 kb on - strand at 469.288 kb on + strand at 469.289 kb on - strand at 469.289 kb on - strand at 469.289 kb on - strand at 469.289 kb on - strand at 469.289 kb on - strand at 469.289 kb on - strand at 469.290 kb on + strand at 469.290 kb on + strand at 469.291 kb on - strand at 469.291 kb on - strand at 469.322 kb on - strand at 469.426 kb on + strand, within EX31_RS02150 at 469.427 kb on - strand, within EX31_RS02150 at 469.564 kb on + strand, within EX31_RS02150 at 469.564 kb on + strand, within EX31_RS02150 at 469.564 kb on + strand, within EX31_RS02150 at 469.564 kb on + strand, within EX31_RS02150 at 469.564 kb on + strand, within EX31_RS02150 at 469.564 kb on + strand, within EX31_RS02150 at 469.564 kb on + strand, within EX31_RS02150 at 469.565 kb on - strand, within EX31_RS02150 at 469.574 kb on + strand, within EX31_RS02150 at 469.574 kb on + strand, within EX31_RS02150 at 469.634 kb on + strand, within EX31_RS02150 at 469.634 kb on + strand, within EX31_RS02150 at 469.634 kb on + strand, within EX31_RS02150 at 469.634 kb on + strand, within EX31_RS02150 at 469.634 kb on + strand, within EX31_RS02150 at 469.634 kb on + strand, within EX31_RS02150 at 469.634 kb on + strand, within EX31_RS02150 at 469.634 kb on + strand, within EX31_RS02150 at 469.634 kb on + strand, within EX31_RS02150 at 469.635 kb on - strand, within EX31_RS02150 at 469.635 kb on - strand, within EX31_RS02150 at 469.635 kb on - strand, within EX31_RS02150 at 469.738 kb on + strand, within EX31_RS02150 at 469.739 kb on - strand, within EX31_RS02150 at 469.739 kb on - strand, within EX31_RS02150 at 469.911 kb on + strand at 469.939 kb on + strand at 470.050 kb on - strand, within EX31_RS02155 at 470.062 kb on - strand, within EX31_RS02155 at 470.255 kb on + strand, within EX31_RS02155 at 470.255 kb on + strand, within EX31_RS02155 at 470.255 kb on + strand, within EX31_RS02155 at 470.255 kb on + strand, within EX31_RS02155 at 470.255 kb on + strand, within EX31_RS02155 at 470.256 kb on - strand, within EX31_RS02155 at 470.256 kb on - strand, within EX31_RS02155 at 470.256 kb on - strand, within EX31_RS02155 at 470.256 kb on - strand, within EX31_RS02155 at 470.256 kb on - strand, within EX31_RS02155 at 470.256 kb on - strand, within EX31_RS02155 at 470.258 kb on - strand, within EX31_RS02155 at 470.258 kb on - strand, within EX31_RS02155 at 470.333 kb on + strand, within EX31_RS02155 at 470.334 kb on - strand, within EX31_RS02155 at 470.416 kb on + strand, within EX31_RS02155 at 470.513 kb on + strand, within EX31_RS02155 at 470.514 kb on - strand, within EX31_RS02155
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 468,420 - EX31_RS02145 0.36 -0.4 468,467 + EX31_RS02145 0.40 +0.9 468,475 - EX31_RS02145 0.41 +0.2 468,486 + EX31_RS02145 0.42 +1.7 468,487 - EX31_RS02145 0.42 +0.1 468,488 + EX31_RS02145 0.42 +0.0 468,488 + EX31_RS02145 0.42 +0.9 469,036 + -0.7 469,036 + +0.4 469,036 + +0.9 469,036 + -1.8 469,036 + +0.6 469,036 + +0.5 469,037 - +0.4 469,037 - -0.3 469,037 - +0.5 469,037 - +0.9 469,105 + +0.3 469,173 + +0.1 469,173 + +1.0 469,173 + -0.2 469,174 - -0.2 469,174 - +0.3 469,288 + -0.1 469,289 - +0.1 469,289 - +0.1 469,289 - +1.0 469,289 - -2.5 469,289 - -0.9 469,289 - +0.3 469,290 + -0.4 469,290 + -1.6 469,291 - +0.1 469,291 - +0.5 469,322 - +0.4 469,426 + EX31_RS02150 0.26 +0.4 469,427 - EX31_RS02150 0.26 -0.3 469,564 + EX31_RS02150 0.51 +1.0 469,564 + EX31_RS02150 0.51 +0.2 469,564 + EX31_RS02150 0.51 -0.2 469,564 + EX31_RS02150 0.51 +0.9 469,564 + EX31_RS02150 0.51 -0.6 469,564 + EX31_RS02150 0.51 +0.4 469,564 + EX31_RS02150 0.51 -0.8 469,565 - EX31_RS02150 0.51 +0.4 469,574 + EX31_RS02150 0.52 -0.8 469,574 + EX31_RS02150 0.52 +0.1 469,634 + EX31_RS02150 0.63 -0.3 469,634 + EX31_RS02150 0.63 +0.6 469,634 + EX31_RS02150 0.63 -0.2 469,634 + EX31_RS02150 0.63 -0.5 469,634 + EX31_RS02150 0.63 +0.8 469,634 + EX31_RS02150 0.63 -2.9 469,634 + EX31_RS02150 0.63 +0.1 469,634 + EX31_RS02150 0.63 +0.4 469,634 + EX31_RS02150 0.63 +1.7 469,635 - EX31_RS02150 0.63 -0.7 469,635 - EX31_RS02150 0.63 +0.9 469,635 - EX31_RS02150 0.63 -0.6 469,738 + EX31_RS02150 0.82 -0.0 469,739 - EX31_RS02150 0.82 +0.8 469,739 - EX31_RS02150 0.82 -0.3 469,911 + +0.8 469,939 + +0.5 470,050 - EX31_RS02155 0.12 +0.3 470,062 - EX31_RS02155 0.13 +0.1 470,255 + EX31_RS02155 0.31 -2.5 470,255 + EX31_RS02155 0.31 -0.1 470,255 + EX31_RS02155 0.31 -1.4 470,255 + EX31_RS02155 0.31 -1.8 470,255 + EX31_RS02155 0.31 -2.0 470,256 - EX31_RS02155 0.31 -0.4 470,256 - EX31_RS02155 0.31 +1.2 470,256 - EX31_RS02155 0.31 -0.6 470,256 - EX31_RS02155 0.31 -0.6 470,256 - EX31_RS02155 0.31 -0.4 470,256 - EX31_RS02155 0.31 -0.3 470,258 - EX31_RS02155 0.31 -0.7 470,258 - EX31_RS02155 0.31 -2.2 470,333 + EX31_RS02155 0.37 -1.7 470,334 - EX31_RS02155 0.37 -0.2 470,416 + EX31_RS02155 0.45 -1.2 470,513 + EX31_RS02155 0.53 -1.3 470,514 - EX31_RS02155 0.53 -1.4
Or see this region's nucleotide sequence