Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02050 and EX31_RS02055 are separated by 89 nucleotides EX31_RS02055 and EX31_RS02060 are separated by 77 nucleotides
EX31_RS02050: EX31_RS02050 - LuxR family transcriptional regulator, at 449,295 to 450,050
_RS02050
EX31_RS02055: EX31_RS02055 - proline iminopeptidase-family hydrolase, at 450,140 to 451,039
_RS02055
EX31_RS02060: EX31_RS02060 - AraC family transcriptional regulator, at 451,117 to 452,103
_RS02060
Position (kb) 450
451
452 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 449.154 kb on + strand at 449.154 kb on + strand at 449.155 kb on - strand at 449.155 kb on - strand at 449.155 kb on - strand at 449.158 kb on + strand at 449.167 kb on + strand at 449.171 kb on - strand at 449.171 kb on - strand at 449.171 kb on - strand at 449.407 kb on - strand, within EX31_RS02050 at 449.412 kb on + strand, within EX31_RS02050 at 449.413 kb on - strand, within EX31_RS02050 at 449.521 kb on - strand, within EX31_RS02050 at 449.521 kb on - strand, within EX31_RS02050 at 449.521 kb on - strand, within EX31_RS02050 at 449.545 kb on - strand, within EX31_RS02050 at 449.646 kb on + strand, within EX31_RS02050 at 449.647 kb on - strand, within EX31_RS02050 at 449.647 kb on - strand, within EX31_RS02050 at 449.767 kb on + strand, within EX31_RS02050 at 449.767 kb on + strand, within EX31_RS02050 at 449.767 kb on + strand, within EX31_RS02050 at 449.768 kb on - strand, within EX31_RS02050 at 449.768 kb on - strand, within EX31_RS02050 at 449.768 kb on - strand, within EX31_RS02050 at 449.768 kb on - strand, within EX31_RS02050 at 449.997 kb on - strand at 450.065 kb on + strand at 450.117 kb on + strand at 450.117 kb on + strand at 450.118 kb on - strand at 450.143 kb on + strand at 450.144 kb on - strand at 450.144 kb on - strand at 450.179 kb on + strand at 450.210 kb on + strand at 450.210 kb on + strand at 450.269 kb on + strand, within EX31_RS02055 at 450.269 kb on + strand, within EX31_RS02055 at 450.270 kb on - strand, within EX31_RS02055 at 450.270 kb on - strand, within EX31_RS02055 at 450.270 kb on - strand, within EX31_RS02055 at 450.270 kb on - strand, within EX31_RS02055 at 450.270 kb on - strand, within EX31_RS02055 at 450.320 kb on + strand, within EX31_RS02055 at 450.321 kb on - strand, within EX31_RS02055 at 450.335 kb on - strand, within EX31_RS02055 at 450.656 kb on + strand, within EX31_RS02055 at 450.657 kb on - strand, within EX31_RS02055 at 450.675 kb on + strand, within EX31_RS02055 at 450.680 kb on + strand, within EX31_RS02055 at 450.681 kb on - strand, within EX31_RS02055 at 450.681 kb on - strand, within EX31_RS02055 at 450.681 kb on - strand, within EX31_RS02055 at 450.764 kb on + strand, within EX31_RS02055 at 450.764 kb on + strand, within EX31_RS02055 at 450.921 kb on + strand, within EX31_RS02055 at 451.045 kb on + strand at 451.045 kb on + strand at 451.045 kb on + strand at 451.045 kb on + strand at 451.045 kb on + strand at 451.045 kb on + strand at 451.045 kb on + strand at 451.045 kb on + strand at 451.045 kb on + strand at 451.045 kb on + strand at 451.045 kb on + strand at 451.045 kb on + strand at 451.045 kb on + strand at 451.045 kb on + strand at 451.046 kb on - strand at 451.046 kb on - strand at 451.046 kb on - strand at 451.046 kb on - strand at 451.046 kb on - strand at 451.046 kb on - strand at 451.046 kb on - strand at 451.047 kb on + strand at 451.047 kb on + strand at 451.048 kb on - strand at 451.048 kb on - strand at 451.095 kb on + strand at 451.096 kb on - strand at 451.155 kb on + strand at 451.155 kb on + strand at 451.156 kb on - strand at 451.156 kb on - strand at 451.156 kb on - strand at 451.156 kb on - strand at 451.157 kb on + strand at 451.157 kb on + strand at 451.157 kb on + strand at 451.158 kb on - strand at 451.158 kb on - strand at 451.158 kb on - strand at 451.158 kb on - strand at 451.158 kb on - strand at 451.186 kb on - strand at 451.186 kb on - strand at 451.186 kb on - strand at 451.187 kb on + strand at 451.187 kb on + strand at 451.550 kb on - strand, within EX31_RS02060 at 451.550 kb on - strand, within EX31_RS02060 at 451.550 kb on - strand, within EX31_RS02060 at 451.593 kb on - strand, within EX31_RS02060 at 451.683 kb on - strand, within EX31_RS02060 at 451.683 kb on - strand, within EX31_RS02060 at 451.725 kb on + strand, within EX31_RS02060 at 451.726 kb on - strand, within EX31_RS02060 at 451.751 kb on - strand, within EX31_RS02060 at 451.885 kb on - strand, within EX31_RS02060 at 451.885 kb on - strand, within EX31_RS02060 at 451.885 kb on - strand, within EX31_RS02060 at 451.910 kb on + strand, within EX31_RS02060 at 451.911 kb on - strand, within EX31_RS02060 at 451.911 kb on - strand, within EX31_RS02060 at 451.911 kb on - strand, within EX31_RS02060 at 451.919 kb on + strand, within EX31_RS02060 at 451.919 kb on + strand, within EX31_RS02060 at 451.920 kb on - strand, within EX31_RS02060
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 449,154 + -0.0 449,154 + -0.8 449,155 - +0.1 449,155 - +0.3 449,155 - +0.6 449,158 + -0.2 449,167 + +0.8 449,171 - +0.8 449,171 - +0.5 449,171 - +0.0 449,407 - EX31_RS02050 0.15 -1.0 449,412 + EX31_RS02050 0.15 -0.4 449,413 - EX31_RS02050 0.16 +1.2 449,521 - EX31_RS02050 0.30 +0.8 449,521 - EX31_RS02050 0.30 -2.7 449,521 - EX31_RS02050 0.30 -0.5 449,545 - EX31_RS02050 0.33 -1.0 449,646 + EX31_RS02050 0.46 +0.3 449,647 - EX31_RS02050 0.47 -1.0 449,647 - EX31_RS02050 0.47 -0.9 449,767 + EX31_RS02050 0.62 +0.2 449,767 + EX31_RS02050 0.62 -0.7 449,767 + EX31_RS02050 0.62 -0.4 449,768 - EX31_RS02050 0.63 -0.4 449,768 - EX31_RS02050 0.63 +0.1 449,768 - EX31_RS02050 0.63 -1.1 449,768 - EX31_RS02050 0.63 +0.7 449,997 - -1.3 450,065 + +0.9 450,117 + +0.6 450,117 + +0.6 450,118 - -0.2 450,143 + -0.4 450,144 - +0.6 450,144 - +0.0 450,179 + -0.8 450,210 + +1.0 450,210 + +0.3 450,269 + EX31_RS02055 0.14 -0.5 450,269 + EX31_RS02055 0.14 +1.4 450,270 - EX31_RS02055 0.14 -0.8 450,270 - EX31_RS02055 0.14 +0.8 450,270 - EX31_RS02055 0.14 -0.5 450,270 - EX31_RS02055 0.14 +0.1 450,270 - EX31_RS02055 0.14 +0.4 450,320 + EX31_RS02055 0.20 +0.6 450,321 - EX31_RS02055 0.20 +0.5 450,335 - EX31_RS02055 0.22 -0.5 450,656 + EX31_RS02055 0.57 +1.0 450,657 - EX31_RS02055 0.57 +0.7 450,675 + EX31_RS02055 0.59 +1.8 450,680 + EX31_RS02055 0.60 +0.6 450,681 - EX31_RS02055 0.60 -0.3 450,681 - EX31_RS02055 0.60 -2.8 450,681 - EX31_RS02055 0.60 -0.8 450,764 + EX31_RS02055 0.69 +0.6 450,764 + EX31_RS02055 0.69 +0.4 450,921 + EX31_RS02055 0.87 +1.0 451,045 + -0.5 451,045 + +0.4 451,045 + -0.4 451,045 + -0.7 451,045 + +0.8 451,045 + +0.6 451,045 + +0.4 451,045 + +1.8 451,045 + -1.5 451,045 + -0.3 451,045 + +1.9 451,045 + -0.8 451,045 + +0.2 451,045 + -1.0 451,046 - -2.4 451,046 - +0.4 451,046 - -0.4 451,046 - +1.1 451,046 - -1.8 451,046 - +1.6 451,046 - +0.7 451,047 + +0.4 451,047 + -0.1 451,048 - +0.0 451,048 - -1.1 451,095 + +0.6 451,096 - +0.7 451,155 + -1.0 451,155 + -0.7 451,156 - -0.8 451,156 - -1.1 451,156 - -0.0 451,156 - -0.3 451,157 + +0.1 451,157 + -0.2 451,157 + -1.0 451,158 - +0.2 451,158 - -0.2 451,158 - -0.5 451,158 - -0.6 451,158 - -0.2 451,186 - -0.3 451,186 - -0.9 451,186 - +0.0 451,187 + -3.0 451,187 + +0.8 451,550 - EX31_RS02060 0.44 -0.5 451,550 - EX31_RS02060 0.44 +0.2 451,550 - EX31_RS02060 0.44 -0.7 451,593 - EX31_RS02060 0.48 +0.2 451,683 - EX31_RS02060 0.57 -0.4 451,683 - EX31_RS02060 0.57 +0.5 451,725 + EX31_RS02060 0.62 +0.1 451,726 - EX31_RS02060 0.62 -0.6 451,751 - EX31_RS02060 0.64 +0.5 451,885 - EX31_RS02060 0.78 -0.3 451,885 - EX31_RS02060 0.78 +0.6 451,885 - EX31_RS02060 0.78 -0.2 451,910 + EX31_RS02060 0.80 +0.9 451,911 - EX31_RS02060 0.80 +0.6 451,911 - EX31_RS02060 0.80 +0.6 451,911 - EX31_RS02060 0.80 +0.2 451,919 + EX31_RS02060 0.81 +0.7 451,919 + EX31_RS02060 0.81 +0.3 451,920 - EX31_RS02060 0.81 +0.2
Or see this region's nucleotide sequence