Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01610 and EX31_RS01615 are separated by 8 nucleotides EX31_RS01615 and EX31_RS01620 overlap by 8 nucleotides EX31_RS01620 and EX31_RS01625 are separated by 85 nucleotides EX31_RS01625 and EX31_RS01630 are separated by 49 nucleotides
EX31_RS01610: EX31_RS01610 - phage tail protein, at 358,552 to 359,103
_RS01610
EX31_RS01615: EX31_RS01615 - DNA breaking-rejoining protein, at 359,112 to 359,387
_RS01615
EX31_RS01620: EX31_RS01620 - DUF2190 family protein, at 359,380 to 359,706
_RS01620
EX31_RS01625: EX31_RS01625 - Clp protease ClpP, at 359,792 to 361,750
_RS01625
EX31_RS01630: EX31_RS01630 - phage portal protein, at 361,800 to 363,278
_RS01630
Position (kb) 359
360
361
362 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 359.058 kb on + strand at 359.103 kb on + strand at 359.103 kb on + strand at 359.103 kb on + strand at 359.168 kb on - strand, within EX31_RS01615 at 359.168 kb on - strand, within EX31_RS01615 at 359.168 kb on - strand, within EX31_RS01615 at 359.183 kb on - strand, within EX31_RS01615 at 359.183 kb on - strand, within EX31_RS01615 at 359.491 kb on - strand, within EX31_RS01620 at 359.493 kb on - strand, within EX31_RS01620 at 359.493 kb on - strand, within EX31_RS01620 at 359.621 kb on - strand, within EX31_RS01620 at 359.621 kb on - strand, within EX31_RS01620 at 359.665 kb on - strand, within EX31_RS01620 at 359.743 kb on + strand at 359.744 kb on - strand at 359.744 kb on - strand at 359.747 kb on + strand at 359.794 kb on - strand at 359.904 kb on + strand at 359.904 kb on + strand at 359.905 kb on - strand at 359.905 kb on - strand at 359.928 kb on + strand at 360.268 kb on + strand, within EX31_RS01625 at 360.306 kb on + strand, within EX31_RS01625 at 360.306 kb on + strand, within EX31_RS01625 at 360.307 kb on - strand, within EX31_RS01625 at 360.468 kb on + strand, within EX31_RS01625 at 360.469 kb on - strand, within EX31_RS01625 at 360.641 kb on - strand, within EX31_RS01625 at 360.699 kb on + strand, within EX31_RS01625 at 360.699 kb on + strand, within EX31_RS01625 at 360.768 kb on + strand, within EX31_RS01625 at 360.768 kb on + strand, within EX31_RS01625 at 360.768 kb on + strand, within EX31_RS01625 at 361.207 kb on + strand, within EX31_RS01625 at 361.220 kb on - strand, within EX31_RS01625 at 361.220 kb on - strand, within EX31_RS01625 at 361.356 kb on + strand, within EX31_RS01625 at 361.356 kb on + strand, within EX31_RS01625 at 361.357 kb on - strand, within EX31_RS01625 at 361.401 kb on + strand, within EX31_RS01625 at 361.401 kb on + strand, within EX31_RS01625 at 361.401 kb on + strand, within EX31_RS01625 at 361.402 kb on - strand, within EX31_RS01625 at 361.451 kb on + strand, within EX31_RS01625 at 361.538 kb on - strand, within EX31_RS01625 at 361.539 kb on + strand, within EX31_RS01625 at 361.567 kb on + strand at 361.568 kb on - strand at 361.578 kb on + strand at 361.578 kb on + strand at 361.579 kb on - strand at 361.579 kb on - strand at 361.633 kb on + strand at 361.714 kb on + strand at 361.714 kb on + strand at 361.715 kb on - strand at 361.715 kb on - strand at 361.717 kb on - strand at 361.717 kb on - strand at 361.717 kb on - strand at 361.717 kb on - strand at 361.720 kb on + strand at 361.784 kb on - strand at 361.784 kb on - strand at 361.869 kb on + strand at 361.870 kb on - strand at 361.911 kb on + strand at 361.912 kb on - strand at 362.080 kb on - strand, within EX31_RS01630 at 362.126 kb on - strand, within EX31_RS01630 at 362.215 kb on + strand, within EX31_RS01630 at 362.215 kb on + strand, within EX31_RS01630 at 362.215 kb on + strand, within EX31_RS01630 at 362.216 kb on - strand, within EX31_RS01630 at 362.227 kb on + strand, within EX31_RS01630 at 362.228 kb on - strand, within EX31_RS01630 at 362.330 kb on + strand, within EX31_RS01630 at 362.331 kb on - strand, within EX31_RS01630 at 362.415 kb on - strand, within EX31_RS01630 at 362.458 kb on + strand, within EX31_RS01630 at 362.458 kb on + strand, within EX31_RS01630 at 362.458 kb on + strand, within EX31_RS01630 at 362.458 kb on + strand, within EX31_RS01630 at 362.459 kb on - strand, within EX31_RS01630 at 362.459 kb on - strand, within EX31_RS01630 at 362.459 kb on - strand, within EX31_RS01630 at 362.459 kb on - strand, within EX31_RS01630 at 362.459 kb on - strand, within EX31_RS01630 at 362.628 kb on - strand, within EX31_RS01630 at 362.675 kb on - strand, within EX31_RS01630 at 362.675 kb on - strand, within EX31_RS01630 at 362.675 kb on - strand, within EX31_RS01630 at 362.675 kb on - strand, within EX31_RS01630 at 362.675 kb on - strand, within EX31_RS01630 at 362.675 kb on - strand, within EX31_RS01630 at 362.704 kb on + strand, within EX31_RS01630 at 362.704 kb on + strand, within EX31_RS01630 at 362.704 kb on + strand, within EX31_RS01630 at 362.704 kb on + strand, within EX31_RS01630 at 362.705 kb on - strand, within EX31_RS01630 at 362.705 kb on - strand, within EX31_RS01630
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 359,058 + +0.0 359,103 + +0.5 359,103 + +0.1 359,103 + -0.7 359,168 - EX31_RS01615 0.20 +1.0 359,168 - EX31_RS01615 0.20 +0.5 359,168 - EX31_RS01615 0.20 -0.5 359,183 - EX31_RS01615 0.26 -0.6 359,183 - EX31_RS01615 0.26 +0.9 359,491 - EX31_RS01620 0.34 -0.4 359,493 - EX31_RS01620 0.35 +0.4 359,493 - EX31_RS01620 0.35 +0.5 359,621 - EX31_RS01620 0.74 +0.8 359,621 - EX31_RS01620 0.74 -1.2 359,665 - EX31_RS01620 0.87 -0.1 359,743 + -0.4 359,744 - +0.3 359,744 - +1.0 359,747 + -1.2 359,794 - +0.6 359,904 + -1.7 359,904 + +0.2 359,905 - -1.5 359,905 - +0.5 359,928 + +0.5 360,268 + EX31_RS01625 0.24 -0.1 360,306 + EX31_RS01625 0.26 -0.4 360,306 + EX31_RS01625 0.26 +1.0 360,307 - EX31_RS01625 0.26 -0.1 360,468 + EX31_RS01625 0.35 +0.6 360,469 - EX31_RS01625 0.35 +0.7 360,641 - EX31_RS01625 0.43 +0.7 360,699 + EX31_RS01625 0.46 +0.5 360,699 + EX31_RS01625 0.46 +0.8 360,768 + EX31_RS01625 0.50 +2.0 360,768 + EX31_RS01625 0.50 +0.1 360,768 + EX31_RS01625 0.50 +0.6 361,207 + EX31_RS01625 0.72 -2.8 361,220 - EX31_RS01625 0.73 -0.5 361,220 - EX31_RS01625 0.73 +1.1 361,356 + EX31_RS01625 0.80 +0.6 361,356 + EX31_RS01625 0.80 +0.6 361,357 - EX31_RS01625 0.80 -1.1 361,401 + EX31_RS01625 0.82 +1.8 361,401 + EX31_RS01625 0.82 -1.1 361,401 + EX31_RS01625 0.82 +0.7 361,402 - EX31_RS01625 0.82 -2.4 361,451 + EX31_RS01625 0.85 +0.7 361,538 - EX31_RS01625 0.89 +0.3 361,539 + EX31_RS01625 0.89 +0.5 361,567 + +0.5 361,568 - +0.7 361,578 + -0.3 361,578 + -0.1 361,579 - +0.3 361,579 - +1.0 361,633 + -2.7 361,714 + -0.4 361,714 + +0.9 361,715 - +0.4 361,715 - +1.2 361,717 - +0.3 361,717 - +0.4 361,717 - +0.1 361,717 - -1.6 361,720 + -1.0 361,784 - -0.3 361,784 - +0.3 361,869 + -0.5 361,870 - -2.1 361,911 + -2.0 361,912 - +0.8 362,080 - EX31_RS01630 0.19 +0.4 362,126 - EX31_RS01630 0.22 -0.3 362,215 + EX31_RS01630 0.28 +0.1 362,215 + EX31_RS01630 0.28 +0.9 362,215 + EX31_RS01630 0.28 +0.5 362,216 - EX31_RS01630 0.28 -0.3 362,227 + EX31_RS01630 0.29 +0.5 362,228 - EX31_RS01630 0.29 +0.4 362,330 + EX31_RS01630 0.36 +1.7 362,331 - EX31_RS01630 0.36 -1.5 362,415 - EX31_RS01630 0.42 -0.8 362,458 + EX31_RS01630 0.44 -0.6 362,458 + EX31_RS01630 0.44 +0.1 362,458 + EX31_RS01630 0.44 +0.3 362,458 + EX31_RS01630 0.44 -0.2 362,459 - EX31_RS01630 0.45 +0.3 362,459 - EX31_RS01630 0.45 +1.0 362,459 - EX31_RS01630 0.45 -0.3 362,459 - EX31_RS01630 0.45 -1.2 362,459 - EX31_RS01630 0.45 +1.3 362,628 - EX31_RS01630 0.56 +1.4 362,675 - EX31_RS01630 0.59 -0.5 362,675 - EX31_RS01630 0.59 -2.3 362,675 - EX31_RS01630 0.59 +0.4 362,675 - EX31_RS01630 0.59 -0.6 362,675 - EX31_RS01630 0.59 +1.2 362,675 - EX31_RS01630 0.59 +0.1 362,704 + EX31_RS01630 0.61 -0.0 362,704 + EX31_RS01630 0.61 -0.3 362,704 + EX31_RS01630 0.61 +0.4 362,704 + EX31_RS01630 0.61 -0.1 362,705 - EX31_RS01630 0.61 -0.5 362,705 - EX31_RS01630 0.61 -0.7
Or see this region's nucleotide sequence