Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01440 and EX31_RS01445 are separated by 4 nucleotides EX31_RS01445 and EX31_RS01450 overlap by 32 nucleotides
EX31_RS01440: EX31_RS01440 - molecular chaperone HscC, at 323,426 to 325,111
_RS01440
EX31_RS01445: EX31_RS01445 - J domain-containing protein, at 325,116 to 325,688
_RS01445
EX31_RS01450: EX31_RS01450 - hypothetical protein, at 325,657 to 327,060
_RS01450
Position (kb) 325
326 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 324.167 kb on + strand, within EX31_RS01440 at 324.235 kb on + strand, within EX31_RS01440 at 324.396 kb on + strand, within EX31_RS01440 at 324.396 kb on + strand, within EX31_RS01440 at 324.396 kb on + strand, within EX31_RS01440 at 324.500 kb on - strand, within EX31_RS01440 at 324.586 kb on - strand, within EX31_RS01440 at 324.586 kb on - strand, within EX31_RS01440 at 324.654 kb on - strand, within EX31_RS01440 at 324.761 kb on + strand, within EX31_RS01440 at 324.761 kb on + strand, within EX31_RS01440 at 324.761 kb on + strand, within EX31_RS01440 at 324.761 kb on + strand, within EX31_RS01440 at 324.869 kb on - strand, within EX31_RS01440 at 324.956 kb on + strand at 324.957 kb on - strand at 325.142 kb on - strand at 325.227 kb on + strand, within EX31_RS01445 at 325.227 kb on + strand, within EX31_RS01445 at 325.228 kb on - strand, within EX31_RS01445 at 325.283 kb on + strand, within EX31_RS01445 at 325.340 kb on - strand, within EX31_RS01445 at 325.478 kb on + strand, within EX31_RS01445 at 325.635 kb on - strand at 326.186 kb on + strand, within EX31_RS01450 at 326.186 kb on + strand, within EX31_RS01450 at 326.186 kb on + strand, within EX31_RS01450 at 326.186 kb on + strand, within EX31_RS01450 at 326.187 kb on - strand, within EX31_RS01450 at 326.204 kb on + strand, within EX31_RS01450 at 326.204 kb on + strand, within EX31_RS01450 at 326.205 kb on - strand, within EX31_RS01450 at 326.207 kb on - strand, within EX31_RS01450 at 326.238 kb on + strand, within EX31_RS01450 at 326.284 kb on + strand, within EX31_RS01450 at 326.284 kb on + strand, within EX31_RS01450 at 326.284 kb on + strand, within EX31_RS01450 at 326.351 kb on + strand, within EX31_RS01450 at 326.351 kb on + strand, within EX31_RS01450 at 326.352 kb on - strand, within EX31_RS01450 at 326.359 kb on + strand, within EX31_RS01450 at 326.359 kb on + strand, within EX31_RS01450 at 326.491 kb on + strand, within EX31_RS01450 at 326.492 kb on - strand, within EX31_RS01450 at 326.492 kb on - strand, within EX31_RS01450 at 326.492 kb on - strand, within EX31_RS01450 at 326.504 kb on + strand, within EX31_RS01450 at 326.513 kb on - strand, within EX31_RS01450 at 326.562 kb on - strand, within EX31_RS01450 at 326.677 kb on + strand, within EX31_RS01450 at 326.677 kb on + strand, within EX31_RS01450 at 326.677 kb on + strand, within EX31_RS01450 at 326.678 kb on - strand, within EX31_RS01450 at 326.678 kb on - strand, within EX31_RS01450 at 326.678 kb on - strand, within EX31_RS01450 at 326.678 kb on - strand, within EX31_RS01450 at 326.678 kb on - strand, within EX31_RS01450 at 326.678 kb on - strand, within EX31_RS01450 at 326.678 kb on - strand, within EX31_RS01450
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 324,167 + EX31_RS01440 0.44 +0.6 324,235 + EX31_RS01440 0.48 +0.5 324,396 + EX31_RS01440 0.58 +0.4 324,396 + EX31_RS01440 0.58 -0.0 324,396 + EX31_RS01440 0.58 +1.0 324,500 - EX31_RS01440 0.64 -0.1 324,586 - EX31_RS01440 0.69 +0.1 324,586 - EX31_RS01440 0.69 +0.6 324,654 - EX31_RS01440 0.73 -0.1 324,761 + EX31_RS01440 0.79 -0.2 324,761 + EX31_RS01440 0.79 +0.8 324,761 + EX31_RS01440 0.79 +0.4 324,761 + EX31_RS01440 0.79 -1.3 324,869 - EX31_RS01440 0.86 +0.1 324,956 + -0.2 324,957 - -0.2 325,142 - +0.4 325,227 + EX31_RS01445 0.19 +1.2 325,227 + EX31_RS01445 0.19 -0.7 325,228 - EX31_RS01445 0.20 +0.1 325,283 + EX31_RS01445 0.29 -0.4 325,340 - EX31_RS01445 0.39 +0.6 325,478 + EX31_RS01445 0.63 +0.9 325,635 - -0.1 326,186 + EX31_RS01450 0.38 +0.3 326,186 + EX31_RS01450 0.38 -2.9 326,186 + EX31_RS01450 0.38 -1.8 326,186 + EX31_RS01450 0.38 +1.1 326,187 - EX31_RS01450 0.38 -1.2 326,204 + EX31_RS01450 0.39 +0.4 326,204 + EX31_RS01450 0.39 -0.4 326,205 - EX31_RS01450 0.39 -1.8 326,207 - EX31_RS01450 0.39 -1.6 326,238 + EX31_RS01450 0.41 +0.4 326,284 + EX31_RS01450 0.45 +0.6 326,284 + EX31_RS01450 0.45 +1.0 326,284 + EX31_RS01450 0.45 +0.6 326,351 + EX31_RS01450 0.49 +0.5 326,351 + EX31_RS01450 0.49 -0.3 326,352 - EX31_RS01450 0.50 +1.5 326,359 + EX31_RS01450 0.50 -0.3 326,359 + EX31_RS01450 0.50 +0.5 326,491 + EX31_RS01450 0.59 -0.9 326,492 - EX31_RS01450 0.59 -2.1 326,492 - EX31_RS01450 0.59 +0.6 326,492 - EX31_RS01450 0.59 +0.5 326,504 + EX31_RS01450 0.60 -0.5 326,513 - EX31_RS01450 0.61 +0.8 326,562 - EX31_RS01450 0.64 +0.8 326,677 + EX31_RS01450 0.73 +0.6 326,677 + EX31_RS01450 0.73 +2.6 326,677 + EX31_RS01450 0.73 -0.2 326,678 - EX31_RS01450 0.73 -0.3 326,678 - EX31_RS01450 0.73 +0.5 326,678 - EX31_RS01450 0.73 +0.5 326,678 - EX31_RS01450 0.73 -1.4 326,678 - EX31_RS01450 0.73 +0.4 326,678 - EX31_RS01450 0.73 +0.2 326,678 - EX31_RS01450 0.73 -0.3
Or see this region's nucleotide sequence