Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS00975 and EX31_RS00980 are separated by 13 nucleotides EX31_RS00980 and EX31_RS00985 overlap by 1 nucleotides EX31_RS00985 and EX31_RS00990 are separated by 11 nucleotides EX31_RS00990 and EX31_RS00995 overlap by 4 nucleotides EX31_RS00995 and EX31_RS01000 overlap by 1 nucleotides
EX31_RS00975: EX31_RS00975 - type VI secretion system tip protein VgrG, at 211,176 to 213,089
_RS00975
EX31_RS00980: EX31_RS00980 - hypothetical protein, at 213,103 to 213,618
_RS00980
EX31_RS00985: EX31_RS00985 - type VI secretion protein, at 213,618 to 213,917
_RS00985
EX31_RS00990: EX31_RS00990 - type VI secretion system protein TssA, at 213,929 to 214,993
_RS00990
EX31_RS00995: EX31_RS00995 - type VI secretion lipoprotein TssJ, at 214,990 to 215,565
_RS00995
EX31_RS01000: EX31_RS01000 - type VI secretion system baseplate subunit TssK, at 215,565 to 216,959
_RS01000
Position (kb) 213
214
215 Strain fitness (log2 ratio) -2
-1
0
1
2 at 212.967 kb on - strand at 213.017 kb on + strand at 213.017 kb on + strand at 213.116 kb on + strand at 213.116 kb on + strand at 213.142 kb on + strand at 213.142 kb on + strand at 213.142 kb on + strand at 213.564 kb on + strand, within EX31_RS00980 at 213.564 kb on + strand, within EX31_RS00980 at 213.564 kb on + strand, within EX31_RS00980 at 213.564 kb on + strand, within EX31_RS00980 at 213.565 kb on - strand, within EX31_RS00980 at 213.613 kb on + strand at 213.647 kb on + strand at 213.733 kb on + strand, within EX31_RS00985 at 213.734 kb on - strand, within EX31_RS00985 at 213.737 kb on + strand, within EX31_RS00985 at 213.746 kb on + strand, within EX31_RS00985 at 213.746 kb on + strand, within EX31_RS00985 at 213.905 kb on - strand at 213.915 kb on + strand at 213.916 kb on - strand at 213.922 kb on + strand at 213.923 kb on - strand at 213.991 kb on + strand at 213.998 kb on + strand at 213.998 kb on + strand at 213.998 kb on + strand at 213.998 kb on + strand at 214.010 kb on + strand at 214.010 kb on + strand at 214.010 kb on + strand at 214.050 kb on - strand, within EX31_RS00990 at 214.050 kb on - strand, within EX31_RS00990 at 214.081 kb on - strand, within EX31_RS00990 at 214.477 kb on + strand, within EX31_RS00990 at 214.555 kb on + strand, within EX31_RS00990 at 214.555 kb on + strand, within EX31_RS00990 at 214.555 kb on + strand, within EX31_RS00990 at 214.556 kb on - strand, within EX31_RS00990 at 214.580 kb on + strand, within EX31_RS00990 at 214.581 kb on - strand, within EX31_RS00990 at 214.630 kb on + strand, within EX31_RS00990 at 214.716 kb on + strand, within EX31_RS00990 at 214.716 kb on + strand, within EX31_RS00990 at 214.717 kb on - strand, within EX31_RS00990 at 214.717 kb on - strand, within EX31_RS00990 at 214.717 kb on - strand, within EX31_RS00990 at 214.717 kb on - strand, within EX31_RS00990 at 214.720 kb on - strand, within EX31_RS00990 at 214.720 kb on - strand, within EX31_RS00990 at 214.768 kb on + strand, within EX31_RS00990 at 214.768 kb on + strand, within EX31_RS00990 at 214.768 kb on + strand, within EX31_RS00990 at 214.900 kb on + strand at 214.948 kb on + strand at 214.949 kb on - strand at 214.968 kb on + strand at 214.968 kb on + strand at 214.969 kb on - strand at 215.021 kb on + strand at 215.181 kb on + strand, within EX31_RS00995 at 215.181 kb on + strand, within EX31_RS00995 at 215.182 kb on - strand, within EX31_RS00995 at 215.182 kb on - strand, within EX31_RS00995 at 215.186 kb on + strand, within EX31_RS00995 at 215.186 kb on + strand, within EX31_RS00995 at 215.187 kb on - strand, within EX31_RS00995 at 215.190 kb on - strand, within EX31_RS00995 at 215.196 kb on - strand, within EX31_RS00995 at 215.196 kb on - strand, within EX31_RS00995 at 215.223 kb on + strand, within EX31_RS00995 at 215.228 kb on + strand, within EX31_RS00995 at 215.306 kb on - strand, within EX31_RS00995 at 215.387 kb on - strand, within EX31_RS00995 at 215.387 kb on - strand, within EX31_RS00995 at 215.390 kb on - strand, within EX31_RS00995 at 215.607 kb on + strand at 215.689 kb on - strand at 215.690 kb on + strand at 215.714 kb on + strand, within EX31_RS01000 at 215.714 kb on + strand, within EX31_RS01000 at 215.714 kb on + strand, within EX31_RS01000 at 215.718 kb on - strand, within EX31_RS01000 at 215.768 kb on + strand, within EX31_RS01000 at 215.769 kb on - strand, within EX31_RS01000
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 212,967 - +1.1 213,017 + -0.1 213,017 + -0.5 213,116 + -2.1 213,116 + +0.0 213,142 + -0.2 213,142 + +0.4 213,142 + -2.4 213,564 + EX31_RS00980 0.89 -0.1 213,564 + EX31_RS00980 0.89 -1.3 213,564 + EX31_RS00980 0.89 +0.8 213,564 + EX31_RS00980 0.89 +0.3 213,565 - EX31_RS00980 0.90 -0.9 213,613 + +1.1 213,647 + -0.3 213,733 + EX31_RS00985 0.38 -1.2 213,734 - EX31_RS00985 0.39 -0.1 213,737 + EX31_RS00985 0.40 +0.2 213,746 + EX31_RS00985 0.43 -1.3 213,746 + EX31_RS00985 0.43 -0.8 213,905 - +0.6 213,915 + +1.1 213,916 - -0.2 213,922 + +0.8 213,923 - +2.0 213,991 + +0.0 213,998 + -1.2 213,998 + +0.3 213,998 + +0.1 213,998 + -0.2 214,010 + -0.7 214,010 + -0.9 214,010 + +0.1 214,050 - EX31_RS00990 0.11 -1.1 214,050 - EX31_RS00990 0.11 +2.2 214,081 - EX31_RS00990 0.14 +1.6 214,477 + EX31_RS00990 0.51 -0.3 214,555 + EX31_RS00990 0.59 +0.3 214,555 + EX31_RS00990 0.59 +0.3 214,555 + EX31_RS00990 0.59 +1.0 214,556 - EX31_RS00990 0.59 +1.1 214,580 + EX31_RS00990 0.61 +0.9 214,581 - EX31_RS00990 0.61 +0.6 214,630 + EX31_RS00990 0.66 +0.3 214,716 + EX31_RS00990 0.74 -0.8 214,716 + EX31_RS00990 0.74 -1.2 214,717 - EX31_RS00990 0.74 -1.6 214,717 - EX31_RS00990 0.74 +0.5 214,717 - EX31_RS00990 0.74 +0.5 214,717 - EX31_RS00990 0.74 -0.2 214,720 - EX31_RS00990 0.74 -0.1 214,720 - EX31_RS00990 0.74 +1.2 214,768 + EX31_RS00990 0.79 +1.7 214,768 + EX31_RS00990 0.79 +1.3 214,768 + EX31_RS00990 0.79 -0.5 214,900 + +1.2 214,948 + -0.1 214,949 - +0.4 214,968 + -0.1 214,968 + -2.4 214,969 - -0.0 215,021 + -0.4 215,181 + EX31_RS00995 0.33 -0.7 215,181 + EX31_RS00995 0.33 -1.7 215,182 - EX31_RS00995 0.33 -0.6 215,182 - EX31_RS00995 0.33 +1.1 215,186 + EX31_RS00995 0.34 -0.2 215,186 + EX31_RS00995 0.34 -0.7 215,187 - EX31_RS00995 0.34 -0.1 215,190 - EX31_RS00995 0.35 -0.2 215,196 - EX31_RS00995 0.36 +1.7 215,196 - EX31_RS00995 0.36 +0.5 215,223 + EX31_RS00995 0.40 -1.4 215,228 + EX31_RS00995 0.41 +0.2 215,306 - EX31_RS00995 0.55 +0.4 215,387 - EX31_RS00995 0.69 -0.3 215,387 - EX31_RS00995 0.69 -1.0 215,390 - EX31_RS00995 0.69 -0.0 215,607 + -0.1 215,689 - +0.7 215,690 + -1.7 215,714 + EX31_RS01000 0.11 -0.9 215,714 + EX31_RS01000 0.11 -0.6 215,714 + EX31_RS01000 0.11 -0.5 215,718 - EX31_RS01000 0.11 +0.7 215,768 + EX31_RS01000 0.15 +0.2 215,769 - EX31_RS01000 0.15 -0.1
Or see this region's nucleotide sequence