Strain Fitness in Rahnella sp. WP5 around EX31_RS00840

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS00830 and EX31_RS00835 overlap by 4 nucleotidesEX31_RS00835 and EX31_RS00840 overlap by 8 nucleotidesEX31_RS00840 and EX31_RS00845 are separated by 48 nucleotides EX31_RS00830: EX31_RS00830 - ABC transporter ATP-binding protein, at 180,649 to 181,428 _RS00830 EX31_RS00835: EX31_RS00835 - branched-chain amino acid ABC transporter permease, at 181,425 to 182,312 _RS00835 EX31_RS00840: EX31_RS00840 - branched-chain amino acid ABC transporter permease, at 182,305 to 183,198 _RS00840 EX31_RS00845: EX31_RS00845 - ABC transporter substrate-binding protein, at 183,247 to 184,374 _RS00845 Position (kb) 182 183 184Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 181.353 kb on + strandat 181.485 kb on + strandat 181.486 kb on - strandat 181.488 kb on + strandat 181.489 kb on - strandat 181.550 kb on - strand, within EX31_RS00835at 181.550 kb on - strand, within EX31_RS00835at 181.550 kb on - strand, within EX31_RS00835at 181.574 kb on + strand, within EX31_RS00835at 181.574 kb on + strand, within EX31_RS00835at 181.574 kb on + strand, within EX31_RS00835at 181.575 kb on - strand, within EX31_RS00835at 181.575 kb on - strand, within EX31_RS00835at 181.575 kb on - strand, within EX31_RS00835at 181.575 kb on - strand, within EX31_RS00835at 181.576 kb on + strand, within EX31_RS00835at 181.576 kb on + strand, within EX31_RS00835at 181.577 kb on - strand, within EX31_RS00835at 181.577 kb on - strand, within EX31_RS00835at 181.629 kb on - strand, within EX31_RS00835at 181.655 kb on + strand, within EX31_RS00835at 181.696 kb on + strand, within EX31_RS00835at 181.697 kb on - strand, within EX31_RS00835at 181.697 kb on - strand, within EX31_RS00835at 181.717 kb on - strand, within EX31_RS00835at 181.721 kb on + strand, within EX31_RS00835at 181.787 kb on - strand, within EX31_RS00835at 181.901 kb on + strand, within EX31_RS00835at 182.057 kb on - strand, within EX31_RS00835at 182.179 kb on + strand, within EX31_RS00835at 182.180 kb on - strand, within EX31_RS00835at 182.180 kb on - strand, within EX31_RS00835at 182.230 kb on + strandat 182.269 kb on + strandat 182.269 kb on + strandat 182.270 kb on - strandat 182.291 kb on + strandat 182.291 kb on + strandat 182.350 kb on + strandat 182.351 kb on - strandat 182.351 kb on - strandat 182.351 kb on - strandat 182.413 kb on + strand, within EX31_RS00840at 182.414 kb on - strand, within EX31_RS00840at 182.598 kb on + strand, within EX31_RS00840at 182.598 kb on + strand, within EX31_RS00840at 182.598 kb on + strand, within EX31_RS00840at 182.649 kb on + strand, within EX31_RS00840at 182.650 kb on - strand, within EX31_RS00840at 182.849 kb on + strand, within EX31_RS00840at 182.850 kb on - strand, within EX31_RS00840at 182.906 kb on - strand, within EX31_RS00840at 183.064 kb on - strand, within EX31_RS00840at 183.083 kb on + strand, within EX31_RS00840at 183.084 kb on - strand, within EX31_RS00840at 183.091 kb on - strand, within EX31_RS00840at 183.091 kb on - strand, within EX31_RS00840at 183.134 kb on - strandat 183.177 kb on + strandat 183.177 kb on + strandat 183.177 kb on + strandat 183.177 kb on + strandat 183.178 kb on - strandat 183.178 kb on - strandat 183.178 kb on - strandat 183.178 kb on - strandat 183.236 kb on - strandat 183.290 kb on + strandat 183.303 kb on + strandat 183.303 kb on + strandat 183.303 kb on + strandat 183.304 kb on - strandat 183.304 kb on - strandat 183.304 kb on - strandat 183.328 kb on + strandat 183.328 kb on + strandat 183.328 kb on + strandat 183.328 kb on + strandat 183.329 kb on - strandat 183.436 kb on + strand, within EX31_RS00845at 183.437 kb on - strand, within EX31_RS00845at 183.437 kb on - strand, within EX31_RS00845at 183.437 kb on - strand, within EX31_RS00845at 183.438 kb on - strand, within EX31_RS00845at 183.453 kb on - strand, within EX31_RS00845at 183.457 kb on - strand, within EX31_RS00845at 183.457 kb on - strand, within EX31_RS00845at 183.462 kb on - strand, within EX31_RS00845at 183.462 kb on - strand, within EX31_RS00845at 183.498 kb on - strand, within EX31_RS00845at 183.509 kb on + strand, within EX31_RS00845at 183.509 kb on + strand, within EX31_RS00845at 183.510 kb on - strand, within EX31_RS00845at 183.514 kb on + strand, within EX31_RS00845at 183.546 kb on + strand, within EX31_RS00845at 183.546 kb on + strand, within EX31_RS00845at 183.581 kb on + strand, within EX31_RS00845at 183.614 kb on - strand, within EX31_RS00845at 183.617 kb on + strand, within EX31_RS00845at 183.617 kb on + strand, within EX31_RS00845at 183.617 kb on + strand, within EX31_RS00845at 183.617 kb on + strand, within EX31_RS00845at 183.617 kb on + strand, within EX31_RS00845at 183.618 kb on - strand, within EX31_RS00845at 183.618 kb on - strand, within EX31_RS00845at 183.618 kb on - strand, within EX31_RS00845at 183.693 kb on - strand, within EX31_RS00845at 183.702 kb on - strand, within EX31_RS00845at 183.707 kb on + strand, within EX31_RS00845at 183.707 kb on + strand, within EX31_RS00845at 183.708 kb on - strand, within EX31_RS00845at 183.708 kb on - strand, within EX31_RS00845at 183.752 kb on + strand, within EX31_RS00845at 183.773 kb on + strand, within EX31_RS00845at 183.849 kb on - strand, within EX31_RS00845at 184.028 kb on + strand, within EX31_RS00845at 184.029 kb on - strand, within EX31_RS00845at 184.099 kb on + strand, within EX31_RS00845at 184.104 kb on + strand, within EX31_RS00845at 184.104 kb on + strand, within EX31_RS00845at 184.104 kb on + strand, within EX31_RS00845at 184.105 kb on - strand, within EX31_RS00845at 184.105 kb on - strand, within EX31_RS00845at 184.162 kb on + strand, within EX31_RS00845at 184.163 kb on - strand, within EX31_RS00845at 184.163 kb on - strand, within EX31_RS00845

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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181,353 + -0.0
181,485 + +0.8
181,486 - +0.0
181,488 + -2.0
181,489 - -0.0
181,550 - EX31_RS00835 0.14 +0.0
181,550 - EX31_RS00835 0.14 +1.5
181,550 - EX31_RS00835 0.14 +0.6
181,574 + EX31_RS00835 0.17 -1.0
181,574 + EX31_RS00835 0.17 -1.7
181,574 + EX31_RS00835 0.17 -0.9
181,575 - EX31_RS00835 0.17 -0.0
181,575 - EX31_RS00835 0.17 -0.0
181,575 - EX31_RS00835 0.17 -0.4
181,575 - EX31_RS00835 0.17 -0.3
181,576 + EX31_RS00835 0.17 +0.7
181,576 + EX31_RS00835 0.17 +0.0
181,577 - EX31_RS00835 0.17 -0.6
181,577 - EX31_RS00835 0.17 -0.0
181,629 - EX31_RS00835 0.23 +0.1
181,655 + EX31_RS00835 0.26 +0.4
181,696 + EX31_RS00835 0.31 +0.6
181,697 - EX31_RS00835 0.31 -0.5
181,697 - EX31_RS00835 0.31 +1.3
181,717 - EX31_RS00835 0.33 +0.1
181,721 + EX31_RS00835 0.33 +0.8
181,787 - EX31_RS00835 0.41 +0.3
181,901 + EX31_RS00835 0.54 +1.3
182,057 - EX31_RS00835 0.71 -1.2
182,179 + EX31_RS00835 0.85 +0.3
182,180 - EX31_RS00835 0.85 -0.9
182,180 - EX31_RS00835 0.85 -2.0
182,230 + +1.3
182,269 + +0.4
182,269 + -0.9
182,270 - -4.1
182,291 + -0.1
182,291 + -0.8
182,350 + -0.7
182,351 - +0.4
182,351 - +0.7
182,351 - +0.9
182,413 + EX31_RS00840 0.12 +0.9
182,414 - EX31_RS00840 0.12 +1.1
182,598 + EX31_RS00840 0.33 +0.5
182,598 + EX31_RS00840 0.33 +0.1
182,598 + EX31_RS00840 0.33 -2.9
182,649 + EX31_RS00840 0.38 +0.2
182,650 - EX31_RS00840 0.39 +0.6
182,849 + EX31_RS00840 0.61 +0.2
182,850 - EX31_RS00840 0.61 +1.7
182,906 - EX31_RS00840 0.67 -0.7
183,064 - EX31_RS00840 0.85 -1.4
183,083 + EX31_RS00840 0.87 +0.6
183,084 - EX31_RS00840 0.87 +0.4
183,091 - EX31_RS00840 0.88 +0.8
183,091 - EX31_RS00840 0.88 -0.0
183,134 - -0.0
183,177 + +0.1
183,177 + +1.3
183,177 + -1.2
183,177 + +0.2
183,178 - +0.2
183,178 - -0.0
183,178 - -0.5
183,178 - -0.2
183,236 - +1.7
183,290 + -0.2
183,303 + -0.1
183,303 + -1.6
183,303 + -1.5
183,304 - +0.2
183,304 - +0.3
183,304 - +1.2
183,328 + -0.6
183,328 + -1.0
183,328 + +1.1
183,328 + -0.5
183,329 - -0.7
183,436 + EX31_RS00845 0.17 -0.3
183,437 - EX31_RS00845 0.17 +0.1
183,437 - EX31_RS00845 0.17 -0.1
183,437 - EX31_RS00845 0.17 +0.5
183,438 - EX31_RS00845 0.17 +0.8
183,453 - EX31_RS00845 0.18 +1.0
183,457 - EX31_RS00845 0.19 -2.0
183,457 - EX31_RS00845 0.19 +0.5
183,462 - EX31_RS00845 0.19 +0.2
183,462 - EX31_RS00845 0.19 -2.9
183,498 - EX31_RS00845 0.22 +0.6
183,509 + EX31_RS00845 0.23 -0.5
183,509 + EX31_RS00845 0.23 +0.6
183,510 - EX31_RS00845 0.23 -1.5
183,514 + EX31_RS00845 0.24 +0.6
183,546 + EX31_RS00845 0.27 +0.1
183,546 + EX31_RS00845 0.27 -1.0
183,581 + EX31_RS00845 0.30 +1.0
183,614 - EX31_RS00845 0.33 +0.9
183,617 + EX31_RS00845 0.33 -0.0
183,617 + EX31_RS00845 0.33 -0.3
183,617 + EX31_RS00845 0.33 -1.3
183,617 + EX31_RS00845 0.33 -2.0
183,617 + EX31_RS00845 0.33 +1.1
183,618 - EX31_RS00845 0.33 +0.1
183,618 - EX31_RS00845 0.33 -1.2
183,618 - EX31_RS00845 0.33 -0.8
183,693 - EX31_RS00845 0.40 -1.4
183,702 - EX31_RS00845 0.40 -1.0
183,707 + EX31_RS00845 0.41 +0.7
183,707 + EX31_RS00845 0.41 +1.0
183,708 - EX31_RS00845 0.41 -0.4
183,708 - EX31_RS00845 0.41 -0.4
183,752 + EX31_RS00845 0.45 +0.7
183,773 + EX31_RS00845 0.47 +0.1
183,849 - EX31_RS00845 0.53 -0.0
184,028 + EX31_RS00845 0.69 +0.1
184,029 - EX31_RS00845 0.69 -0.2
184,099 + EX31_RS00845 0.76 +0.5
184,104 + EX31_RS00845 0.76 -0.2
184,104 + EX31_RS00845 0.76 +0.2
184,104 + EX31_RS00845 0.76 +0.3
184,105 - EX31_RS00845 0.76 +0.5
184,105 - EX31_RS00845 0.76 -1.2
184,162 + EX31_RS00845 0.81 -0.1
184,163 - EX31_RS00845 0.81 -0.2
184,163 - EX31_RS00845 0.81 -0.9

Or see this region's nucleotide sequence