Strain Fitness in Rahnella sp. WP5 around EX31_RS22785

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS22780 and EX31_RS22785 are separated by 99 nucleotidesEX31_RS22785 and EX31_RS22790 are separated by 10 nucleotidesEX31_RS22790 and EX31_RS22795 overlap by 4 nucleotides EX31_RS22780: EX31_RS22780 - hypothetical protein, at 315,950 to 317,260 _RS22780 EX31_RS22785: EX31_RS22785 - YpfN family protein, at 317,360 to 317,545 _RS22785 EX31_RS22790: EX31_RS22790 - M15 family metallopeptidase, at 317,556 to 318,230 _RS22790 EX31_RS22795: EX31_RS22795 - succinyl-diaminopimelate desuccinylase, at 318,227 to 319,354 _RS22795 Position (kb) 317 318Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 316.372 kb on + strand, within EX31_RS22780at 316.398 kb on + strand, within EX31_RS22780at 316.398 kb on + strand, within EX31_RS22780at 316.399 kb on - strand, within EX31_RS22780at 316.422 kb on + strand, within EX31_RS22780at 316.422 kb on + strand, within EX31_RS22780at 316.423 kb on - strand, within EX31_RS22780at 316.530 kb on + strand, within EX31_RS22780at 316.530 kb on + strand, within EX31_RS22780at 316.626 kb on - strand, within EX31_RS22780at 316.787 kb on + strand, within EX31_RS22780at 316.787 kb on + strand, within EX31_RS22780at 316.836 kb on + strand, within EX31_RS22780at 316.837 kb on - strand, within EX31_RS22780at 316.837 kb on - strand, within EX31_RS22780at 316.837 kb on - strand, within EX31_RS22780at 316.837 kb on - strand, within EX31_RS22780at 316.837 kb on - strand, within EX31_RS22780at 316.837 kb on - strand, within EX31_RS22780at 316.837 kb on - strand, within EX31_RS22780at 316.926 kb on - strand, within EX31_RS22780at 316.931 kb on + strand, within EX31_RS22780at 316.932 kb on - strand, within EX31_RS22780at 316.965 kb on + strand, within EX31_RS22780at 316.965 kb on + strand, within EX31_RS22780at 316.966 kb on - strand, within EX31_RS22780at 316.966 kb on - strand, within EX31_RS22780at 316.966 kb on - strand, within EX31_RS22780at 316.966 kb on - strand, within EX31_RS22780at 317.140 kb on + strandat 317.140 kb on + strandat 317.144 kb on + strandat 317.144 kb on + strandat 317.145 kb on - strandat 317.215 kb on + strandat 317.215 kb on + strandat 317.216 kb on - strandat 317.216 kb on - strandat 317.216 kb on - strandat 317.219 kb on + strandat 317.220 kb on - strandat 317.220 kb on - strandat 317.271 kb on - strandat 317.283 kb on + strandat 317.284 kb on - strandat 317.284 kb on - strandat 317.307 kb on + strandat 317.324 kb on - strandat 317.327 kb on - strandat 317.327 kb on - strandat 317.333 kb on + strandat 317.362 kb on - strandat 317.434 kb on + strand, within EX31_RS22785at 317.489 kb on - strand, within EX31_RS22785at 317.527 kb on - strandat 317.534 kb on - strandat 317.550 kb on + strandat 317.551 kb on - strandat 317.551 kb on - strandat 317.557 kb on + strandat 317.558 kb on - strandat 317.558 kb on - strandat 317.558 kb on - strandat 317.558 kb on - strandat 317.558 kb on - strandat 317.771 kb on - strand, within EX31_RS22790at 317.771 kb on - strand, within EX31_RS22790at 317.781 kb on - strand, within EX31_RS22790at 317.781 kb on - strand, within EX31_RS22790at 318.005 kb on + strand, within EX31_RS22790at 318.006 kb on - strand, within EX31_RS22790at 318.006 kb on - strand, within EX31_RS22790at 318.009 kb on + strand, within EX31_RS22790at 318.009 kb on + strand, within EX31_RS22790at 318.009 kb on + strand, within EX31_RS22790at 318.009 kb on + strand, within EX31_RS22790at 318.009 kb on + strand, within EX31_RS22790at 318.010 kb on - strand, within EX31_RS22790at 318.010 kb on - strand, within EX31_RS22790at 318.010 kb on - strand, within EX31_RS22790at 318.010 kb on - strand, within EX31_RS22790at 318.010 kb on - strand, within EX31_RS22790at 318.010 kb on - strand, within EX31_RS22790at 318.010 kb on - strand, within EX31_RS22790at 318.010 kb on - strand, within EX31_RS22790at 318.010 kb on - strand, within EX31_RS22790at 318.010 kb on - strand, within EX31_RS22790at 318.010 kb on - strand, within EX31_RS22790at 318.012 kb on + strand, within EX31_RS22790at 318.013 kb on - strand, within EX31_RS22790at 318.237 kb on - strandat 318.237 kb on - strandat 318.237 kb on - strandat 318.237 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
remove
316,372 + EX31_RS22780 0.32 +0.4
316,398 + EX31_RS22780 0.34 -0.1
316,398 + EX31_RS22780 0.34 -0.8
316,399 - EX31_RS22780 0.34 +0.2
316,422 + EX31_RS22780 0.36 -0.5
316,422 + EX31_RS22780 0.36 +0.6
316,423 - EX31_RS22780 0.36 +1.1
316,530 + EX31_RS22780 0.44 -0.7
316,530 + EX31_RS22780 0.44 -1.1
316,626 - EX31_RS22780 0.52 -2.8
316,787 + EX31_RS22780 0.64 -0.1
316,787 + EX31_RS22780 0.64 -0.1
316,836 + EX31_RS22780 0.68 +0.8
316,837 - EX31_RS22780 0.68 -0.3
316,837 - EX31_RS22780 0.68 -1.2
316,837 - EX31_RS22780 0.68 +0.5
316,837 - EX31_RS22780 0.68 +0.6
316,837 - EX31_RS22780 0.68 -0.1
316,837 - EX31_RS22780 0.68 -0.4
316,837 - EX31_RS22780 0.68 -0.6
316,926 - EX31_RS22780 0.74 -1.9
316,931 + EX31_RS22780 0.75 -0.8
316,932 - EX31_RS22780 0.75 -0.6
316,965 + EX31_RS22780 0.77 +0.3
316,965 + EX31_RS22780 0.77 +0.5
316,966 - EX31_RS22780 0.77 -0.3
316,966 - EX31_RS22780 0.77 +0.8
316,966 - EX31_RS22780 0.77 -2.4
316,966 - EX31_RS22780 0.77 -0.2
317,140 + -0.6
317,140 + +0.9
317,144 + +0.5
317,144 + +0.2
317,145 - -0.5
317,215 + -0.7
317,215 + +1.0
317,216 - +0.5
317,216 - +0.6
317,216 - +0.1
317,219 + -1.5
317,220 - -0.8
317,220 - -0.3
317,271 - -1.6
317,283 + -1.3
317,284 - +1.6
317,284 - +0.6
317,307 + -0.1
317,324 - -0.9
317,327 - +0.1
317,327 - +0.3
317,333 + +0.2
317,362 - -0.3
317,434 + EX31_RS22785 0.40 -1.0
317,489 - EX31_RS22785 0.69 -0.7
317,527 - +0.4
317,534 - +0.5
317,550 + -1.5
317,551 - +0.6
317,551 - +1.2
317,557 + -0.4
317,558 - +0.5
317,558 - +1.2
317,558 - +0.1
317,558 - +0.4
317,558 - -1.7
317,771 - EX31_RS22790 0.32 +2.9
317,771 - EX31_RS22790 0.32 -1.0
317,781 - EX31_RS22790 0.33 -0.0
317,781 - EX31_RS22790 0.33 -0.1
318,005 + EX31_RS22790 0.67 -0.8
318,006 - EX31_RS22790 0.67 -0.9
318,006 - EX31_RS22790 0.67 +0.6
318,009 + EX31_RS22790 0.67 -3.4
318,009 + EX31_RS22790 0.67 -0.7
318,009 + EX31_RS22790 0.67 -2.1
318,009 + EX31_RS22790 0.67 -0.0
318,009 + EX31_RS22790 0.67 +1.1
318,010 - EX31_RS22790 0.67 -0.1
318,010 - EX31_RS22790 0.67 +0.8
318,010 - EX31_RS22790 0.67 +0.3
318,010 - EX31_RS22790 0.67 -1.0
318,010 - EX31_RS22790 0.67 +0.1
318,010 - EX31_RS22790 0.67 -1.0
318,010 - EX31_RS22790 0.67 +0.4
318,010 - EX31_RS22790 0.67 -0.1
318,010 - EX31_RS22790 0.67 -1.5
318,010 - EX31_RS22790 0.67 +0.5
318,010 - EX31_RS22790 0.67 -0.6
318,012 + EX31_RS22790 0.68 +0.1
318,013 - EX31_RS22790 0.68 +0.1
318,237 - +0.9
318,237 - -0.6
318,237 - +0.9
318,237 - -0.7

Or see this region's nucleotide sequence