Strain Fitness in Rahnella sp. WP5 around EX31_RS22620

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS22615 and EX31_RS22620 are separated by 155 nucleotidesEX31_RS22620 and EX31_RS22625 overlap by 4 nucleotidesEX31_RS22625 and EX31_RS22630 are separated by 180 nucleotides EX31_RS22615: EX31_RS22615 - ABC transporter permease, at 277,611 to 280,043 _RS22615 EX31_RS22620: EX31_RS22620 - 5-(carboxyamino)imidazole ribonucleotide synthase, at 280,199 to 281,263 _RS22620 EX31_RS22625: EX31_RS22625 - 5-(carboxyamino)imidazole ribonucleotide mutase, at 281,260 to 281,769 _RS22625 EX31_RS22630: EX31_RS22630 - tRNA-(ms[2]io[6]A)-hydroxylase, at 281,950 to 282,582 _RS22630 Position (kb) 280 281 282Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 279.200 kb on + strand, within EX31_RS22615at 279.222 kb on - strand, within EX31_RS22615at 279.352 kb on + strand, within EX31_RS22615at 279.581 kb on + strand, within EX31_RS22615at 279.646 kb on + strand, within EX31_RS22615at 279.647 kb on - strand, within EX31_RS22615at 279.647 kb on - strand, within EX31_RS22615at 279.649 kb on + strand, within EX31_RS22615at 279.649 kb on + strand, within EX31_RS22615at 279.649 kb on + strand, within EX31_RS22615at 279.649 kb on + strand, within EX31_RS22615at 279.649 kb on + strand, within EX31_RS22615at 279.649 kb on + strand, within EX31_RS22615at 279.649 kb on + strand, within EX31_RS22615at 279.649 kb on + strand, within EX31_RS22615at 279.649 kb on + strand, within EX31_RS22615at 279.650 kb on - strand, within EX31_RS22615at 279.650 kb on - strand, within EX31_RS22615at 279.650 kb on - strand, within EX31_RS22615at 279.650 kb on - strand, within EX31_RS22615at 279.650 kb on - strand, within EX31_RS22615at 279.773 kb on + strand, within EX31_RS22615at 279.773 kb on + strand, within EX31_RS22615at 279.773 kb on + strand, within EX31_RS22615at 279.773 kb on + strand, within EX31_RS22615at 279.774 kb on - strand, within EX31_RS22615at 279.927 kb on + strandat 279.927 kb on + strandat 280.032 kb on + strandat 280.051 kb on - strandat 280.098 kb on + strandat 280.143 kb on + strandat 280.144 kb on - strandat 280.153 kb on + strandat 280.154 kb on - strandat 280.154 kb on - strandat 280.154 kb on - strandat 280.157 kb on + strandat 280.157 kb on + strandat 280.158 kb on - strandat 280.180 kb on + strandat 280.181 kb on - strandat 280.181 kb on - strandat 280.181 kb on - strandat 280.181 kb on - strandat 280.183 kb on + strandat 280.183 kb on + strandat 280.184 kb on - strandat 280.236 kb on + strandat 280.237 kb on - strandat 280.497 kb on + strand, within EX31_RS22620at 280.497 kb on + strand, within EX31_RS22620at 280.497 kb on + strand, within EX31_RS22620at 280.497 kb on + strand, within EX31_RS22620at 280.497 kb on + strand, within EX31_RS22620at 280.498 kb on - strand, within EX31_RS22620at 280.498 kb on - strand, within EX31_RS22620at 280.498 kb on - strand, within EX31_RS22620at 280.498 kb on - strand, within EX31_RS22620at 280.608 kb on + strand, within EX31_RS22620at 280.608 kb on + strand, within EX31_RS22620at 280.609 kb on - strand, within EX31_RS22620at 280.609 kb on - strand, within EX31_RS22620at 280.609 kb on - strand, within EX31_RS22620at 280.609 kb on - strand, within EX31_RS22620at 280.609 kb on - strand, within EX31_RS22620at 280.735 kb on - strand, within EX31_RS22620at 280.747 kb on + strand, within EX31_RS22620at 280.748 kb on - strand, within EX31_RS22620at 280.824 kb on + strand, within EX31_RS22620at 280.825 kb on - strand, within EX31_RS22620at 280.843 kb on + strand, within EX31_RS22620at 280.843 kb on + strand, within EX31_RS22620at 280.844 kb on - strand, within EX31_RS22620at 280.938 kb on - strand, within EX31_RS22620at 281.182 kb on - strandat 281.404 kb on - strand, within EX31_RS22625at 281.404 kb on - strand, within EX31_RS22625at 281.456 kb on + strand, within EX31_RS22625at 281.614 kb on - strand, within EX31_RS22625at 281.667 kb on + strand, within EX31_RS22625at 281.668 kb on - strand, within EX31_RS22625at 281.668 kb on - strand, within EX31_RS22625at 281.775 kb on + strandat 281.775 kb on + strandat 281.775 kb on + strandat 281.775 kb on + strandat 281.776 kb on - strandat 281.798 kb on - strandat 281.821 kb on + strandat 281.916 kb on + strandat 281.916 kb on + strandat 281.916 kb on + strandat 281.916 kb on + strandat 281.917 kb on - strandat 281.918 kb on + strandat 281.918 kb on + strandat 281.918 kb on + strandat 281.918 kb on + strandat 281.918 kb on + strandat 281.918 kb on + strandat 281.918 kb on + strandat 281.918 kb on + strandat 281.918 kb on + strandat 281.918 kb on + strandat 281.918 kb on + strandat 281.918 kb on + strandat 281.919 kb on - strandat 281.919 kb on - strandat 281.919 kb on - strandat 281.919 kb on - strandat 281.919 kb on - strandat 281.919 kb on - strandat 281.919 kb on - strandat 281.919 kb on - strandat 281.919 kb on - strandat 281.949 kb on + strandat 281.963 kb on + strandat 282.060 kb on + strand, within EX31_RS22630at 282.109 kb on + strand, within EX31_RS22630at 282.110 kb on - strand, within EX31_RS22630at 282.110 kb on - strand, within EX31_RS22630at 282.110 kb on - strand, within EX31_RS22630at 282.207 kb on + strand, within EX31_RS22630at 282.207 kb on + strand, within EX31_RS22630at 282.207 kb on + strand, within EX31_RS22630at 282.210 kb on + strand, within EX31_RS22630at 282.210 kb on + strand, within EX31_RS22630at 282.210 kb on + strand, within EX31_RS22630at 282.210 kb on + strand, within EX31_RS22630at 282.210 kb on + strand, within EX31_RS22630at 282.210 kb on + strand, within EX31_RS22630at 282.210 kb on + strand, within EX31_RS22630at 282.210 kb on + strand, within EX31_RS22630at 282.210 kb on + strand, within EX31_RS22630at 282.210 kb on + strand, within EX31_RS22630at 282.210 kb on + strand, within EX31_RS22630at 282.210 kb on + strand, within EX31_RS22630at 282.211 kb on - strand, within EX31_RS22630at 282.211 kb on - strand, within EX31_RS22630at 282.211 kb on - strand, within EX31_RS22630at 282.211 kb on - strand, within EX31_RS22630at 282.214 kb on + strand, within EX31_RS22630at 282.214 kb on + strand, within EX31_RS22630at 282.214 kb on + strand, within EX31_RS22630at 282.214 kb on + strand, within EX31_RS22630at 282.214 kb on + strand, within EX31_RS22630at 282.215 kb on - strand, within EX31_RS22630at 282.215 kb on - strand, within EX31_RS22630at 282.215 kb on - strand, within EX31_RS22630at 282.215 kb on - strand, within EX31_RS22630at 282.216 kb on + strand, within EX31_RS22630at 282.261 kb on + strand, within EX31_RS22630at 282.261 kb on + strand, within EX31_RS22630

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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279,200 + EX31_RS22615 0.65 +1.0
279,222 - EX31_RS22615 0.66 +0.3
279,352 + EX31_RS22615 0.72 +0.9
279,581 + EX31_RS22615 0.81 -0.7
279,646 + EX31_RS22615 0.84 -1.2
279,647 - EX31_RS22615 0.84 -0.6
279,647 - EX31_RS22615 0.84 +1.2
279,649 + EX31_RS22615 0.84 -0.3
279,649 + EX31_RS22615 0.84 -1.4
279,649 + EX31_RS22615 0.84 +0.3
279,649 + EX31_RS22615 0.84 -0.8
279,649 + EX31_RS22615 0.84 -0.1
279,649 + EX31_RS22615 0.84 -2.3
279,649 + EX31_RS22615 0.84 -0.1
279,649 + EX31_RS22615 0.84 +0.1
279,649 + EX31_RS22615 0.84 +1.9
279,650 - EX31_RS22615 0.84 +1.1
279,650 - EX31_RS22615 0.84 -1.5
279,650 - EX31_RS22615 0.84 -0.1
279,650 - EX31_RS22615 0.84 -0.7
279,650 - EX31_RS22615 0.84 -0.2
279,773 + EX31_RS22615 0.89 +1.4
279,773 + EX31_RS22615 0.89 -1.3
279,773 + EX31_RS22615 0.89 -2.5
279,773 + EX31_RS22615 0.89 -0.5
279,774 - EX31_RS22615 0.89 +0.8
279,927 + -0.3
279,927 + -0.0
280,032 + -1.1
280,051 - -1.2
280,098 + -3.7
280,143 + -0.2
280,144 - +0.1
280,153 + -0.8
280,154 - +0.7
280,154 - +0.3
280,154 - +0.7
280,157 + -0.6
280,157 + -2.8
280,158 - +1.2
280,180 + -0.6
280,181 - -0.0
280,181 - +0.6
280,181 - +0.1
280,181 - -0.5
280,183 + +0.3
280,183 + -0.2
280,184 - -0.6
280,236 + -2.3
280,237 - -1.2
280,497 + EX31_RS22620 0.28 -2.2
280,497 + EX31_RS22620 0.28 -0.8
280,497 + EX31_RS22620 0.28 -1.2
280,497 + EX31_RS22620 0.28 +1.7
280,497 + EX31_RS22620 0.28 -1.4
280,498 - EX31_RS22620 0.28 -1.2
280,498 - EX31_RS22620 0.28 -0.7
280,498 - EX31_RS22620 0.28 -0.2
280,498 - EX31_RS22620 0.28 +0.0
280,608 + EX31_RS22620 0.38 -1.3
280,608 + EX31_RS22620 0.38 -0.6
280,609 - EX31_RS22620 0.38 -1.1
280,609 - EX31_RS22620 0.38 -0.9
280,609 - EX31_RS22620 0.38 -1.1
280,609 - EX31_RS22620 0.38 +0.2
280,609 - EX31_RS22620 0.38 +0.7
280,735 - EX31_RS22620 0.50 -1.2
280,747 + EX31_RS22620 0.51 -1.1
280,748 - EX31_RS22620 0.52 -1.9
280,824 + EX31_RS22620 0.59 -2.5
280,825 - EX31_RS22620 0.59 -1.8
280,843 + EX31_RS22620 0.60 -1.2
280,843 + EX31_RS22620 0.60 -0.1
280,844 - EX31_RS22620 0.61 -2.5
280,938 - EX31_RS22620 0.69 -0.8
281,182 - -1.1
281,404 - EX31_RS22625 0.28 +0.5
281,404 - EX31_RS22625 0.28 -2.2
281,456 + EX31_RS22625 0.38 -2.2
281,614 - EX31_RS22625 0.69 +0.6
281,667 + EX31_RS22625 0.80 -0.7
281,668 - EX31_RS22625 0.80 -0.9
281,668 - EX31_RS22625 0.80 -0.8
281,775 + +0.4
281,775 + -3.2
281,775 + -2.2
281,775 + +0.2
281,776 - -0.1
281,798 - -1.4
281,821 + -0.6
281,916 + -0.4
281,916 + +0.7
281,916 + +0.5
281,916 + -0.4
281,917 - +0.9
281,918 + -2.3
281,918 + +0.7
281,918 + +0.6
281,918 + -1.0
281,918 + +0.3
281,918 + +1.1
281,918 + -0.4
281,918 + -0.1
281,918 + +0.9
281,918 + -0.1
281,918 + +0.1
281,918 + -0.6
281,919 - -0.8
281,919 - -0.2
281,919 - +0.3
281,919 - +0.6
281,919 - -0.4
281,919 - -0.6
281,919 - +1.2
281,919 - +0.3
281,919 - -3.3
281,949 + -0.4
281,963 + -0.5
282,060 + EX31_RS22630 0.17 -2.1
282,109 + EX31_RS22630 0.25 +0.5
282,110 - EX31_RS22630 0.25 +0.8
282,110 - EX31_RS22630 0.25 +0.3
282,110 - EX31_RS22630 0.25 -2.2
282,207 + EX31_RS22630 0.41 +0.8
282,207 + EX31_RS22630 0.41 -0.9
282,207 + EX31_RS22630 0.41 -1.1
282,210 + EX31_RS22630 0.41 -1.5
282,210 + EX31_RS22630 0.41 -1.4
282,210 + EX31_RS22630 0.41 +0.4
282,210 + EX31_RS22630 0.41 -1.2
282,210 + EX31_RS22630 0.41 -1.1
282,210 + EX31_RS22630 0.41 -0.4
282,210 + EX31_RS22630 0.41 -0.2
282,210 + EX31_RS22630 0.41 -0.2
282,210 + EX31_RS22630 0.41 -2.1
282,210 + EX31_RS22630 0.41 -0.8
282,210 + EX31_RS22630 0.41 -0.2
282,210 + EX31_RS22630 0.41 +1.0
282,211 - EX31_RS22630 0.41 +0.2
282,211 - EX31_RS22630 0.41 +0.7
282,211 - EX31_RS22630 0.41 -0.5
282,211 - EX31_RS22630 0.41 -0.6
282,214 + EX31_RS22630 0.42 +0.1
282,214 + EX31_RS22630 0.42 +0.3
282,214 + EX31_RS22630 0.42 +0.3
282,214 + EX31_RS22630 0.42 -1.0
282,214 + EX31_RS22630 0.42 +0.9
282,215 - EX31_RS22630 0.42 +0.4
282,215 - EX31_RS22630 0.42 +1.0
282,215 - EX31_RS22630 0.42 +0.1
282,215 - EX31_RS22630 0.42 -1.1
282,216 + EX31_RS22630 0.42 +1.5
282,261 + EX31_RS22630 0.49 +1.3
282,261 + EX31_RS22630 0.49 -2.8

Or see this region's nucleotide sequence