Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS19310 and EX31_RS19315 are separated by 0 nucleotides EX31_RS19315 and EX31_RS19320 are separated by 139 nucleotides EX31_RS19320 and EX31_RS19325 are separated by 126 nucleotides EX31_RS19325 and EX31_RS19330 are separated by 297 nucleotides
EX31_RS19310: EX31_RS19310 - ribonucleotide-diphosphate reductase subunit beta, at 487,548 to 488,678
_RS19310
EX31_RS19315: EX31_RS19315 - 2Fe-2S ferredoxin-like protein, at 488,679 to 488,939
_RS19315
EX31_RS19320: EX31_RS19320 - nicotinamide mononucleotide deamidase-related protein YfaY, at 489,079 to 490,284
_RS19320
EX31_RS19325: EX31_RS19325 - membrane protein, at 490,411 to 490,956
_RS19325
EX31_RS19330: EX31_RS19330 - catalase, at 491,254 to 492,693
_RS19330
Position (kb) 489
490
491 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 488.098 kb on + strand, within EX31_RS19310 at 488.098 kb on + strand, within EX31_RS19310 at 488.098 kb on + strand, within EX31_RS19310 at 488.098 kb on + strand, within EX31_RS19310 at 488.098 kb on + strand, within EX31_RS19310 at 488.098 kb on + strand, within EX31_RS19310 at 488.102 kb on + strand, within EX31_RS19310 at 488.117 kb on + strand, within EX31_RS19310 at 488.117 kb on + strand, within EX31_RS19310 at 488.117 kb on + strand, within EX31_RS19310 at 488.117 kb on + strand, within EX31_RS19310 at 488.117 kb on + strand, within EX31_RS19310 at 488.117 kb on + strand, within EX31_RS19310 at 488.117 kb on + strand, within EX31_RS19310 at 488.117 kb on + strand, within EX31_RS19310 at 488.117 kb on + strand, within EX31_RS19310 at 488.130 kb on + strand, within EX31_RS19310 at 488.130 kb on + strand, within EX31_RS19310 at 488.130 kb on + strand, within EX31_RS19310 at 488.130 kb on + strand, within EX31_RS19310 at 488.130 kb on + strand, within EX31_RS19310 at 488.130 kb on + strand, within EX31_RS19310 at 488.130 kb on + strand, within EX31_RS19310 at 488.167 kb on + strand, within EX31_RS19310 at 488.175 kb on + strand, within EX31_RS19310 at 488.176 kb on - strand, within EX31_RS19310 at 488.415 kb on + strand, within EX31_RS19310 at 488.415 kb on + strand, within EX31_RS19310 at 488.469 kb on + strand, within EX31_RS19310 at 488.469 kb on + strand, within EX31_RS19310 at 488.469 kb on + strand, within EX31_RS19310 at 488.469 kb on + strand, within EX31_RS19310 at 488.478 kb on + strand, within EX31_RS19310 at 488.478 kb on + strand, within EX31_RS19310 at 488.478 kb on + strand, within EX31_RS19310 at 488.478 kb on + strand, within EX31_RS19310 at 488.479 kb on - strand, within EX31_RS19310 at 488.479 kb on - strand, within EX31_RS19310 at 488.496 kb on - strand, within EX31_RS19310 at 488.616 kb on + strand at 488.617 kb on - strand at 488.623 kb on + strand at 488.676 kb on + strand at 488.676 kb on + strand at 488.729 kb on + strand, within EX31_RS19315 at 488.729 kb on + strand, within EX31_RS19315 at 488.730 kb on - strand, within EX31_RS19315 at 488.787 kb on + strand, within EX31_RS19315 at 488.873 kb on + strand, within EX31_RS19315 at 488.893 kb on + strand, within EX31_RS19315 at 488.893 kb on + strand, within EX31_RS19315 at 489.080 kb on + strand at 489.081 kb on - strand at 489.081 kb on - strand at 489.154 kb on - strand at 489.187 kb on + strand at 489.187 kb on + strand at 489.188 kb on - strand at 489.188 kb on - strand at 489.265 kb on + strand, within EX31_RS19320 at 489.266 kb on - strand, within EX31_RS19320 at 489.481 kb on + strand, within EX31_RS19320 at 489.482 kb on - strand, within EX31_RS19320 at 489.482 kb on - strand, within EX31_RS19320 at 489.482 kb on - strand, within EX31_RS19320 at 489.482 kb on - strand, within EX31_RS19320 at 489.745 kb on + strand, within EX31_RS19320 at 489.746 kb on - strand, within EX31_RS19320 at 490.054 kb on + strand, within EX31_RS19320 at 490.055 kb on - strand, within EX31_RS19320 at 490.199 kb on + strand at 490.199 kb on + strand at 490.199 kb on + strand at 490.200 kb on - strand at 490.279 kb on - strand at 490.309 kb on + strand at 490.319 kb on + strand at 490.432 kb on + strand at 490.433 kb on - strand at 490.436 kb on + strand at 490.436 kb on + strand at 490.436 kb on + strand at 490.437 kb on - strand at 490.437 kb on - strand at 490.437 kb on - strand at 490.493 kb on + strand, within EX31_RS19325 at 490.494 kb on - strand, within EX31_RS19325 at 490.494 kb on - strand, within EX31_RS19325 at 490.542 kb on + strand, within EX31_RS19325 at 490.542 kb on + strand, within EX31_RS19325 at 490.563 kb on - strand, within EX31_RS19325 at 490.563 kb on - strand, within EX31_RS19325 at 490.563 kb on - strand, within EX31_RS19325 at 490.566 kb on + strand, within EX31_RS19325 at 490.566 kb on + strand, within EX31_RS19325 at 490.567 kb on - strand, within EX31_RS19325 at 490.567 kb on - strand, within EX31_RS19325 at 490.567 kb on - strand, within EX31_RS19325 at 490.567 kb on - strand, within EX31_RS19325 at 490.567 kb on - strand, within EX31_RS19325 at 490.567 kb on - strand, within EX31_RS19325 at 490.567 kb on - strand, within EX31_RS19325 at 490.598 kb on + strand, within EX31_RS19325 at 490.598 kb on + strand, within EX31_RS19325 at 490.598 kb on + strand, within EX31_RS19325 at 490.599 kb on - strand, within EX31_RS19325 at 490.599 kb on - strand, within EX31_RS19325 at 490.601 kb on + strand, within EX31_RS19325 at 490.601 kb on + strand, within EX31_RS19325 at 490.602 kb on - strand, within EX31_RS19325 at 490.602 kb on - strand, within EX31_RS19325 at 490.602 kb on - strand, within EX31_RS19325 at 490.602 kb on - strand, within EX31_RS19325 at 490.602 kb on - strand, within EX31_RS19325 at 490.602 kb on - strand, within EX31_RS19325 at 490.602 kb on - strand, within EX31_RS19325 at 490.602 kb on - strand, within EX31_RS19325 at 490.602 kb on - strand, within EX31_RS19325 at 490.602 kb on - strand, within EX31_RS19325 at 490.602 kb on - strand, within EX31_RS19325 at 490.602 kb on - strand, within EX31_RS19325 at 490.602 kb on - strand, within EX31_RS19325 at 490.605 kb on - strand, within EX31_RS19325 at 490.701 kb on - strand, within EX31_RS19325 at 490.701 kb on - strand, within EX31_RS19325 at 490.701 kb on - strand, within EX31_RS19325 at 490.701 kb on - strand, within EX31_RS19325 at 490.751 kb on + strand, within EX31_RS19325 at 490.799 kb on + strand, within EX31_RS19325 at 490.800 kb on - strand, within EX31_RS19325 at 490.800 kb on - strand, within EX31_RS19325 at 490.800 kb on - strand, within EX31_RS19325 at 490.859 kb on + strand, within EX31_RS19325 at 490.860 kb on - strand, within EX31_RS19325 at 490.860 kb on - strand, within EX31_RS19325 at 490.860 kb on - strand, within EX31_RS19325 at 490.946 kb on - strand at 490.957 kb on + strand at 490.958 kb on - strand at 490.966 kb on + strand at 490.966 kb on + strand at 490.966 kb on + strand at 490.970 kb on + strand at 490.970 kb on + strand at 490.971 kb on - strand at 491.027 kb on + strand at 491.076 kb on - strand at 491.135 kb on + strand at 491.135 kb on + strand at 491.152 kb on + strand at 491.152 kb on + strand at 491.152 kb on + strand at 491.154 kb on + strand at 491.155 kb on - strand at 491.190 kb on + strand at 491.190 kb on + strand at 491.191 kb on - strand at 491.191 kb on - strand at 491.223 kb on + strand at 491.223 kb on + strand at 491.224 kb on - strand at 491.227 kb on + strand at 491.227 kb on + strand at 491.227 kb on + strand at 491.227 kb on + strand at 491.227 kb on + strand at 491.227 kb on + strand at 491.227 kb on + strand at 491.227 kb on + strand at 491.227 kb on + strand at 491.228 kb on - strand at 491.228 kb on - strand at 491.231 kb on + strand at 491.231 kb on + strand at 491.231 kb on + strand at 491.231 kb on + strand at 491.231 kb on + strand at 491.231 kb on + strand at 491.231 kb on + strand at 491.232 kb on - strand at 491.232 kb on - strand at 491.232 kb on - strand at 491.232 kb on - strand at 491.232 kb on - strand at 491.232 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 488,098 + EX31_RS19310 0.49 +0.2 488,098 + EX31_RS19310 0.49 -2.8 488,098 + EX31_RS19310 0.49 -1.2 488,098 + EX31_RS19310 0.49 -0.0 488,098 + EX31_RS19310 0.49 -1.6 488,098 + EX31_RS19310 0.49 -0.8 488,102 + EX31_RS19310 0.49 -0.0 488,117 + EX31_RS19310 0.50 -0.8 488,117 + EX31_RS19310 0.50 +0.8 488,117 + EX31_RS19310 0.50 -1.3 488,117 + EX31_RS19310 0.50 -1.6 488,117 + EX31_RS19310 0.50 -0.0 488,117 + EX31_RS19310 0.50 -0.6 488,117 + EX31_RS19310 0.50 +1.1 488,117 + EX31_RS19310 0.50 -0.3 488,117 + EX31_RS19310 0.50 +0.4 488,130 + EX31_RS19310 0.51 -0.0 488,130 + EX31_RS19310 0.51 -0.2 488,130 + EX31_RS19310 0.51 +0.6 488,130 + EX31_RS19310 0.51 +0.2 488,130 + EX31_RS19310 0.51 +0.8 488,130 + EX31_RS19310 0.51 -0.1 488,130 + EX31_RS19310 0.51 +0.6 488,167 + EX31_RS19310 0.55 +0.2 488,175 + EX31_RS19310 0.55 -2.9 488,176 - EX31_RS19310 0.56 -0.7 488,415 + EX31_RS19310 0.77 -0.3 488,415 + EX31_RS19310 0.77 +0.9 488,469 + EX31_RS19310 0.81 -0.2 488,469 + EX31_RS19310 0.81 +0.7 488,469 + EX31_RS19310 0.81 +0.2 488,469 + EX31_RS19310 0.81 -1.1 488,478 + EX31_RS19310 0.82 -0.6 488,478 + EX31_RS19310 0.82 -0.1 488,478 + EX31_RS19310 0.82 +0.3 488,478 + EX31_RS19310 0.82 +0.0 488,479 - EX31_RS19310 0.82 -0.9 488,479 - EX31_RS19310 0.82 +1.2 488,496 - EX31_RS19310 0.84 -0.7 488,616 + -0.0 488,617 - -0.6 488,623 + +0.4 488,676 + -1.2 488,676 + -0.6 488,729 + EX31_RS19315 0.19 +0.4 488,729 + EX31_RS19315 0.19 +0.1 488,730 - EX31_RS19315 0.20 -0.0 488,787 + EX31_RS19315 0.41 +0.3 488,873 + EX31_RS19315 0.74 -0.9 488,893 + EX31_RS19315 0.82 -0.0 488,893 + EX31_RS19315 0.82 +0.5 489,080 + +0.3 489,081 - -0.7 489,081 - -1.7 489,154 - -0.3 489,187 + +1.6 489,187 + -1.0 489,188 - +0.3 489,188 - +0.6 489,265 + EX31_RS19320 0.15 +0.8 489,266 - EX31_RS19320 0.16 -1.3 489,481 + EX31_RS19320 0.33 +0.2 489,482 - EX31_RS19320 0.33 +0.6 489,482 - EX31_RS19320 0.33 +1.3 489,482 - EX31_RS19320 0.33 +1.2 489,482 - EX31_RS19320 0.33 -0.3 489,745 + EX31_RS19320 0.55 -0.3 489,746 - EX31_RS19320 0.55 +0.3 490,054 + EX31_RS19320 0.81 +1.9 490,055 - EX31_RS19320 0.81 +1.5 490,199 + -0.1 490,199 + +1.0 490,199 + +0.6 490,200 - -0.3 490,279 - +0.7 490,309 + +0.2 490,319 + +0.3 490,432 + +0.4 490,433 - +1.0 490,436 + +0.7 490,436 + +0.6 490,436 + +1.2 490,437 - +0.5 490,437 - -1.0 490,437 - +0.4 490,493 + EX31_RS19325 0.15 -1.5 490,494 - EX31_RS19325 0.15 +0.3 490,494 - EX31_RS19325 0.15 -0.3 490,542 + EX31_RS19325 0.24 -0.8 490,542 + EX31_RS19325 0.24 -0.0 490,563 - EX31_RS19325 0.28 +0.9 490,563 - EX31_RS19325 0.28 -0.1 490,563 - EX31_RS19325 0.28 +0.4 490,566 + EX31_RS19325 0.28 -0.2 490,566 + EX31_RS19325 0.28 -0.8 490,567 - EX31_RS19325 0.29 +0.6 490,567 - EX31_RS19325 0.29 -1.2 490,567 - EX31_RS19325 0.29 -0.5 490,567 - EX31_RS19325 0.29 +0.5 490,567 - EX31_RS19325 0.29 -1.6 490,567 - EX31_RS19325 0.29 -2.3 490,567 - EX31_RS19325 0.29 +0.1 490,598 + EX31_RS19325 0.34 -1.3 490,598 + EX31_RS19325 0.34 -0.1 490,598 + EX31_RS19325 0.34 -0.0 490,599 - EX31_RS19325 0.34 -0.3 490,599 - EX31_RS19325 0.34 -1.0 490,601 + EX31_RS19325 0.35 +0.8 490,601 + EX31_RS19325 0.35 +0.7 490,602 - EX31_RS19325 0.35 +1.0 490,602 - EX31_RS19325 0.35 +0.6 490,602 - EX31_RS19325 0.35 +0.8 490,602 - EX31_RS19325 0.35 -1.3 490,602 - EX31_RS19325 0.35 +0.2 490,602 - EX31_RS19325 0.35 -0.1 490,602 - EX31_RS19325 0.35 +0.7 490,602 - EX31_RS19325 0.35 +0.8 490,602 - EX31_RS19325 0.35 -0.3 490,602 - EX31_RS19325 0.35 -0.6 490,602 - EX31_RS19325 0.35 +0.2 490,602 - EX31_RS19325 0.35 +0.1 490,602 - EX31_RS19325 0.35 -0.0 490,605 - EX31_RS19325 0.36 -0.1 490,701 - EX31_RS19325 0.53 -1.8 490,701 - EX31_RS19325 0.53 -2.4 490,701 - EX31_RS19325 0.53 -0.1 490,701 - EX31_RS19325 0.53 +0.7 490,751 + EX31_RS19325 0.62 +0.3 490,799 + EX31_RS19325 0.71 -0.6 490,800 - EX31_RS19325 0.71 +0.2 490,800 - EX31_RS19325 0.71 +1.2 490,800 - EX31_RS19325 0.71 +0.2 490,859 + EX31_RS19325 0.82 -1.3 490,860 - EX31_RS19325 0.82 +0.4 490,860 - EX31_RS19325 0.82 +0.4 490,860 - EX31_RS19325 0.82 +0.2 490,946 - -0.3 490,957 + +0.0 490,958 - +0.3 490,966 + +0.3 490,966 + -0.2 490,966 + +0.5 490,970 + +0.4 490,970 + -0.9 490,971 - +0.2 491,027 + +0.4 491,076 - +0.8 491,135 + -2.1 491,135 + +0.0 491,152 + +1.2 491,152 + +1.0 491,152 + +1.1 491,154 + -0.3 491,155 - -0.1 491,190 + -1.6 491,190 + +0.1 491,191 - +1.0 491,191 - -1.4 491,223 + +1.4 491,223 + +0.0 491,224 - +1.7 491,227 + -1.2 491,227 + +0.5 491,227 + +0.7 491,227 + -1.6 491,227 + +0.5 491,227 + +0.9 491,227 + -0.5 491,227 + -0.2 491,227 + +0.1 491,228 - -0.9 491,228 - -3.7 491,231 + -2.4 491,231 + +0.1 491,231 + -2.6 491,231 + +0.4 491,231 + +0.6 491,231 + -0.0 491,231 + -0.5 491,232 - +0.7 491,232 - -0.2 491,232 - +0.1 491,232 - +0.1 491,232 - +0.8 491,232 - +0.4
Or see this region's nucleotide sequence