Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS18315 and EX31_RS18320 overlap by 8 nucleotides EX31_RS18320 and EX31_RS18325 are separated by 4 nucleotides EX31_RS18325 and EX31_RS18330 are separated by 17 nucleotides EX31_RS18330 and EX31_RS18335 are separated by 157 nucleotides
EX31_RS18315: EX31_RS18315 - phage tail protein I, at 238,738 to 239,268
_RS18315
EX31_RS18320: EX31_RS18320 - baseplate assembly protein, at 239,261 to 240,169
_RS18320
EX31_RS18325: EX31_RS18325 - baseplate assembly protein, at 240,174 to 240,524
_RS18325
EX31_RS18330: EX31_RS18330 - phage baseplate assembly protein V, at 240,542 to 241,183
_RS18330
EX31_RS18335: EX31_RS18335 - hypothetical protein, at 241,341 to 241,877
_RS18335
Position (kb) 240
241 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 239.249 kb on - strand at 239.262 kb on + strand at 239.263 kb on - strand at 239.304 kb on + strand at 239.318 kb on - strand at 239.318 kb on - strand at 239.391 kb on + strand, within EX31_RS18320 at 239.391 kb on + strand, within EX31_RS18320 at 239.391 kb on + strand, within EX31_RS18320 at 239.391 kb on + strand, within EX31_RS18320 at 239.392 kb on - strand, within EX31_RS18320 at 239.392 kb on - strand, within EX31_RS18320 at 239.392 kb on - strand, within EX31_RS18320 at 239.396 kb on - strand, within EX31_RS18320 at 239.396 kb on - strand, within EX31_RS18320 at 239.411 kb on - strand, within EX31_RS18320 at 239.411 kb on - strand, within EX31_RS18320 at 239.411 kb on - strand, within EX31_RS18320 at 239.505 kb on + strand, within EX31_RS18320 at 239.505 kb on + strand, within EX31_RS18320 at 239.505 kb on + strand, within EX31_RS18320 at 239.505 kb on + strand, within EX31_RS18320 at 239.505 kb on + strand, within EX31_RS18320 at 239.506 kb on - strand, within EX31_RS18320 at 239.506 kb on - strand, within EX31_RS18320 at 239.506 kb on - strand, within EX31_RS18320 at 239.506 kb on - strand, within EX31_RS18320 at 239.512 kb on + strand, within EX31_RS18320 at 239.533 kb on + strand, within EX31_RS18320 at 239.600 kb on - strand, within EX31_RS18320 at 239.603 kb on + strand, within EX31_RS18320 at 239.604 kb on - strand, within EX31_RS18320 at 239.604 kb on - strand, within EX31_RS18320 at 239.604 kb on - strand, within EX31_RS18320 at 239.638 kb on + strand, within EX31_RS18320 at 239.639 kb on - strand, within EX31_RS18320 at 239.662 kb on + strand, within EX31_RS18320 at 239.662 kb on + strand, within EX31_RS18320 at 239.738 kb on - strand, within EX31_RS18320 at 239.820 kb on - strand, within EX31_RS18320 at 239.820 kb on - strand, within EX31_RS18320 at 239.881 kb on + strand, within EX31_RS18320 at 239.881 kb on + strand, within EX31_RS18320 at 239.881 kb on + strand, within EX31_RS18320 at 239.883 kb on + strand, within EX31_RS18320 at 239.883 kb on + strand, within EX31_RS18320 at 239.883 kb on + strand, within EX31_RS18320 at 239.884 kb on - strand, within EX31_RS18320 at 239.884 kb on - strand, within EX31_RS18320 at 239.884 kb on - strand, within EX31_RS18320 at 239.884 kb on - strand, within EX31_RS18320 at 239.922 kb on + strand, within EX31_RS18320 at 239.922 kb on + strand, within EX31_RS18320 at 239.932 kb on + strand, within EX31_RS18320 at 239.933 kb on - strand, within EX31_RS18320 at 239.955 kb on - strand, within EX31_RS18320 at 239.966 kb on + strand, within EX31_RS18320 at 240.010 kb on + strand, within EX31_RS18320 at 240.010 kb on + strand, within EX31_RS18320 at 240.010 kb on + strand, within EX31_RS18320 at 240.010 kb on + strand, within EX31_RS18320 at 240.066 kb on + strand, within EX31_RS18320 at 240.067 kb on - strand, within EX31_RS18320 at 240.152 kb on + strand at 240.153 kb on - strand at 240.161 kb on - strand at 240.169 kb on + strand at 240.169 kb on + strand at 240.169 kb on + strand at 240.175 kb on + strand at 240.176 kb on - strand at 240.176 kb on - strand at 240.233 kb on + strand, within EX31_RS18325 at 240.234 kb on - strand, within EX31_RS18325 at 240.320 kb on - strand, within EX31_RS18325 at 240.509 kb on - strand at 240.518 kb on + strand at 240.541 kb on - strand at 240.541 kb on - strand at 240.541 kb on - strand at 240.559 kb on + strand at 240.563 kb on - strand at 240.592 kb on + strand at 240.593 kb on - strand at 240.622 kb on + strand, within EX31_RS18330 at 240.647 kb on - strand, within EX31_RS18330 at 240.681 kb on - strand, within EX31_RS18330 at 240.681 kb on - strand, within EX31_RS18330 at 240.681 kb on - strand, within EX31_RS18330 at 240.681 kb on - strand, within EX31_RS18330 at 240.713 kb on + strand, within EX31_RS18330 at 240.713 kb on + strand, within EX31_RS18330 at 240.713 kb on + strand, within EX31_RS18330 at 240.714 kb on - strand, within EX31_RS18330 at 240.714 kb on - strand, within EX31_RS18330 at 240.714 kb on - strand, within EX31_RS18330 at 240.714 kb on - strand, within EX31_RS18330 at 240.885 kb on + strand, within EX31_RS18330 at 240.886 kb on - strand, within EX31_RS18330 at 240.927 kb on + strand, within EX31_RS18330 at 240.927 kb on + strand, within EX31_RS18330 at 240.928 kb on - strand, within EX31_RS18330 at 240.995 kb on + strand, within EX31_RS18330 at 240.995 kb on + strand, within EX31_RS18330 at 240.996 kb on - strand, within EX31_RS18330 at 240.996 kb on - strand, within EX31_RS18330 at 240.996 kb on - strand, within EX31_RS18330 at 241.015 kb on + strand, within EX31_RS18330 at 241.016 kb on - strand, within EX31_RS18330 at 241.016 kb on - strand, within EX31_RS18330 at 241.016 kb on - strand, within EX31_RS18330 at 241.154 kb on - strand at 241.183 kb on + strand at 241.184 kb on - strand at 241.208 kb on - strand at 241.292 kb on + strand at 241.297 kb on + strand at 241.328 kb on + strand at 241.328 kb on + strand at 241.329 kb on - strand at 241.370 kb on + strand at 241.370 kb on + strand at 241.414 kb on + strand, within EX31_RS18335 at 241.423 kb on + strand, within EX31_RS18335 at 241.423 kb on + strand, within EX31_RS18335 at 241.423 kb on + strand, within EX31_RS18335 at 241.452 kb on + strand, within EX31_RS18335 at 241.452 kb on + strand, within EX31_RS18335 at 241.452 kb on + strand, within EX31_RS18335 at 241.452 kb on + strand, within EX31_RS18335 at 241.480 kb on + strand, within EX31_RS18335
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 239,249 - -1.3 239,262 + +0.5 239,263 - +0.3 239,304 + +0.6 239,318 - +0.6 239,318 - -0.4 239,391 + EX31_RS18320 0.14 +1.0 239,391 + EX31_RS18320 0.14 -0.0 239,391 + EX31_RS18320 0.14 -0.7 239,391 + EX31_RS18320 0.14 +0.8 239,392 - EX31_RS18320 0.14 -0.1 239,392 - EX31_RS18320 0.14 +0.6 239,392 - EX31_RS18320 0.14 -0.1 239,396 - EX31_RS18320 0.15 +0.4 239,396 - EX31_RS18320 0.15 +0.3 239,411 - EX31_RS18320 0.17 +0.8 239,411 - EX31_RS18320 0.17 +0.5 239,411 - EX31_RS18320 0.17 +0.6 239,505 + EX31_RS18320 0.27 -0.3 239,505 + EX31_RS18320 0.27 +1.1 239,505 + EX31_RS18320 0.27 +0.5 239,505 + EX31_RS18320 0.27 +0.9 239,505 + EX31_RS18320 0.27 -0.0 239,506 - EX31_RS18320 0.27 +0.2 239,506 - EX31_RS18320 0.27 -0.6 239,506 - EX31_RS18320 0.27 -0.3 239,506 - EX31_RS18320 0.27 +0.3 239,512 + EX31_RS18320 0.28 +0.6 239,533 + EX31_RS18320 0.30 +0.2 239,600 - EX31_RS18320 0.37 -0.6 239,603 + EX31_RS18320 0.38 +0.9 239,604 - EX31_RS18320 0.38 -0.4 239,604 - EX31_RS18320 0.38 +1.1 239,604 - EX31_RS18320 0.38 -0.4 239,638 + EX31_RS18320 0.41 -0.4 239,639 - EX31_RS18320 0.42 -0.1 239,662 + EX31_RS18320 0.44 -0.0 239,662 + EX31_RS18320 0.44 +1.4 239,738 - EX31_RS18320 0.52 +0.8 239,820 - EX31_RS18320 0.61 -0.9 239,820 - EX31_RS18320 0.61 +0.4 239,881 + EX31_RS18320 0.68 -0.0 239,881 + EX31_RS18320 0.68 -0.3 239,881 + EX31_RS18320 0.68 -0.5 239,883 + EX31_RS18320 0.68 +0.9 239,883 + EX31_RS18320 0.68 -1.5 239,883 + EX31_RS18320 0.68 +0.1 239,884 - EX31_RS18320 0.69 +0.9 239,884 - EX31_RS18320 0.69 +0.7 239,884 - EX31_RS18320 0.69 -2.8 239,884 - EX31_RS18320 0.69 +0.2 239,922 + EX31_RS18320 0.73 -2.0 239,922 + EX31_RS18320 0.73 +0.4 239,932 + EX31_RS18320 0.74 +0.2 239,933 - EX31_RS18320 0.74 -1.3 239,955 - EX31_RS18320 0.76 +1.0 239,966 + EX31_RS18320 0.78 -0.6 240,010 + EX31_RS18320 0.82 +1.0 240,010 + EX31_RS18320 0.82 +0.7 240,010 + EX31_RS18320 0.82 -1.3 240,010 + EX31_RS18320 0.82 +1.0 240,066 + EX31_RS18320 0.89 +0.5 240,067 - EX31_RS18320 0.89 +0.1 240,152 + +0.1 240,153 - +0.2 240,161 - +1.5 240,169 + -1.2 240,169 + +0.9 240,169 + +0.5 240,175 + -1.1 240,176 - -0.1 240,176 - -1.0 240,233 + EX31_RS18325 0.17 +0.5 240,234 - EX31_RS18325 0.17 +0.4 240,320 - EX31_RS18325 0.42 +1.1 240,509 - +0.6 240,518 + +0.2 240,541 - -1.6 240,541 - +0.8 240,541 - +0.6 240,559 + +1.2 240,563 - -1.7 240,592 + +0.8 240,593 - -0.1 240,622 + EX31_RS18330 0.12 -0.1 240,647 - EX31_RS18330 0.16 -0.0 240,681 - EX31_RS18330 0.22 -0.8 240,681 - EX31_RS18330 0.22 +0.9 240,681 - EX31_RS18330 0.22 +0.8 240,681 - EX31_RS18330 0.22 +0.8 240,713 + EX31_RS18330 0.27 -2.4 240,713 + EX31_RS18330 0.27 +0.1 240,713 + EX31_RS18330 0.27 +0.5 240,714 - EX31_RS18330 0.27 +1.5 240,714 - EX31_RS18330 0.27 -0.9 240,714 - EX31_RS18330 0.27 +0.2 240,714 - EX31_RS18330 0.27 -0.4 240,885 + EX31_RS18330 0.53 -1.2 240,886 - EX31_RS18330 0.54 +0.5 240,927 + EX31_RS18330 0.60 +0.5 240,927 + EX31_RS18330 0.60 -0.7 240,928 - EX31_RS18330 0.60 +1.0 240,995 + EX31_RS18330 0.71 +0.3 240,995 + EX31_RS18330 0.71 +0.2 240,996 - EX31_RS18330 0.71 +0.1 240,996 - EX31_RS18330 0.71 -0.1 240,996 - EX31_RS18330 0.71 +0.5 241,015 + EX31_RS18330 0.74 +2.7 241,016 - EX31_RS18330 0.74 +0.7 241,016 - EX31_RS18330 0.74 -1.4 241,016 - EX31_RS18330 0.74 +1.0 241,154 - +0.8 241,183 + +1.2 241,184 - +0.7 241,208 - +1.2 241,292 + -3.6 241,297 + +1.1 241,328 + +0.6 241,328 + +0.2 241,329 - -2.6 241,370 + -0.1 241,370 + -0.5 241,414 + EX31_RS18335 0.14 -1.3 241,423 + EX31_RS18335 0.15 -0.8 241,423 + EX31_RS18335 0.15 +0.3 241,423 + EX31_RS18335 0.15 -0.4 241,452 + EX31_RS18335 0.21 +0.7 241,452 + EX31_RS18335 0.21 +1.5 241,452 + EX31_RS18335 0.21 -0.7 241,452 + EX31_RS18335 0.21 +0.1 241,480 + EX31_RS18335 0.26 -0.8
Or see this region's nucleotide sequence