Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS18085 and EX31_RS18090 are separated by 30 nucleotides EX31_RS18090 and EX31_RS18095 are separated by 184 nucleotides
EX31_RS18085: EX31_RS18085 - MOSC domain-containing protein, at 178,731 to 179,834
_RS18085
EX31_RS18090: EX31_RS18090 - cell division protein ZapC, at 179,865 to 180,413
_RS18090
EX31_RS18095: EX31_RS18095 - quinone-dependent dihydroorotate dehydrogenase, at 180,598 to 181,608
_RS18095
Position (kb) 179
180
181 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 178.868 kb on + strand, within EX31_RS18085 at 178.869 kb on - strand, within EX31_RS18085 at 179.022 kb on - strand, within EX31_RS18085 at 179.059 kb on + strand, within EX31_RS18085 at 179.060 kb on - strand, within EX31_RS18085 at 179.060 kb on - strand, within EX31_RS18085 at 179.067 kb on + strand, within EX31_RS18085 at 179.067 kb on + strand, within EX31_RS18085 at 179.067 kb on + strand, within EX31_RS18085 at 179.067 kb on + strand, within EX31_RS18085 at 179.067 kb on + strand, within EX31_RS18085 at 179.068 kb on - strand, within EX31_RS18085 at 179.068 kb on - strand, within EX31_RS18085 at 179.071 kb on + strand, within EX31_RS18085 at 179.071 kb on + strand, within EX31_RS18085 at 179.072 kb on - strand, within EX31_RS18085 at 179.072 kb on - strand, within EX31_RS18085 at 179.169 kb on + strand, within EX31_RS18085 at 179.203 kb on + strand, within EX31_RS18085 at 179.203 kb on + strand, within EX31_RS18085 at 179.277 kb on + strand, within EX31_RS18085 at 179.278 kb on - strand, within EX31_RS18085 at 179.352 kb on - strand, within EX31_RS18085 at 179.555 kb on + strand, within EX31_RS18085 at 179.606 kb on + strand, within EX31_RS18085 at 179.606 kb on + strand, within EX31_RS18085 at 179.606 kb on + strand, within EX31_RS18085 at 179.607 kb on - strand, within EX31_RS18085 at 179.607 kb on - strand, within EX31_RS18085 at 179.677 kb on + strand, within EX31_RS18085 at 179.677 kb on + strand, within EX31_RS18085 at 179.677 kb on + strand, within EX31_RS18085 at 179.677 kb on + strand, within EX31_RS18085 at 179.677 kb on + strand, within EX31_RS18085 at 179.677 kb on + strand, within EX31_RS18085 at 179.678 kb on - strand, within EX31_RS18085 at 179.678 kb on - strand, within EX31_RS18085 at 179.681 kb on + strand, within EX31_RS18085 at 179.681 kb on + strand, within EX31_RS18085 at 179.788 kb on + strand at 179.788 kb on + strand at 179.788 kb on + strand at 179.789 kb on - strand at 179.791 kb on + strand at 179.798 kb on + strand at 179.798 kb on + strand at 179.798 kb on + strand at 179.798 kb on + strand at 179.798 kb on + strand at 179.798 kb on + strand at 179.799 kb on - strand at 179.799 kb on - strand at 179.799 kb on - strand at 179.799 kb on - strand at 179.799 kb on - strand at 179.804 kb on + strand at 179.832 kb on + strand at 179.840 kb on + strand at 179.840 kb on + strand at 179.840 kb on + strand at 179.840 kb on + strand at 179.841 kb on - strand at 179.841 kb on - strand at 179.841 kb on - strand at 179.841 kb on - strand at 179.841 kb on - strand at 179.844 kb on + strand at 179.844 kb on + strand at 179.867 kb on - strand at 179.881 kb on + strand at 179.939 kb on + strand, within EX31_RS18090 at 179.940 kb on - strand, within EX31_RS18090 at 179.943 kb on - strand, within EX31_RS18090 at 180.014 kb on + strand, within EX31_RS18090 at 180.015 kb on - strand, within EX31_RS18090 at 180.037 kb on - strand, within EX31_RS18090 at 180.037 kb on - strand, within EX31_RS18090 at 180.215 kb on + strand, within EX31_RS18090 at 180.245 kb on - strand, within EX31_RS18090 at 180.276 kb on - strand, within EX31_RS18090 at 180.354 kb on - strand, within EX31_RS18090 at 180.354 kb on - strand, within EX31_RS18090 at 180.372 kb on - strand at 180.380 kb on - strand at 180.380 kb on - strand at 180.393 kb on - strand at 180.471 kb on - strand at 180.544 kb on + strand at 180.561 kb on + strand at 180.561 kb on + strand at 180.562 kb on - strand at 180.562 kb on - strand at 180.562 kb on - strand at 180.562 kb on - strand at 180.565 kb on + strand at 180.565 kb on + strand at 180.599 kb on + strand at 180.600 kb on - strand at 180.603 kb on + strand at 180.604 kb on - strand at 180.604 kb on - strand at 180.615 kb on + strand at 180.616 kb on - strand at 180.616 kb on - strand at 180.616 kb on - strand at 180.667 kb on + strand at 180.668 kb on - strand at 180.668 kb on - strand at 180.751 kb on + strand, within EX31_RS18095 at 180.751 kb on + strand, within EX31_RS18095 at 180.871 kb on - strand, within EX31_RS18095 at 180.898 kb on - strand, within EX31_RS18095 at 180.978 kb on - strand, within EX31_RS18095 at 180.978 kb on - strand, within EX31_RS18095 at 180.997 kb on + strand, within EX31_RS18095 at 180.998 kb on - strand, within EX31_RS18095 at 181.067 kb on - strand, within EX31_RS18095 at 181.105 kb on - strand, within EX31_RS18095 at 181.105 kb on - strand, within EX31_RS18095 at 181.123 kb on + strand, within EX31_RS18095 at 181.124 kb on - strand, within EX31_RS18095 at 181.124 kb on - strand, within EX31_RS18095 at 181.124 kb on - strand, within EX31_RS18095 at 181.134 kb on + strand, within EX31_RS18095 at 181.135 kb on - strand, within EX31_RS18095 at 181.135 kb on - strand, within EX31_RS18095 at 181.145 kb on + strand, within EX31_RS18095 at 181.173 kb on + strand, within EX31_RS18095 at 181.173 kb on + strand, within EX31_RS18095 at 181.180 kb on - strand, within EX31_RS18095 at 181.192 kb on - strand, within EX31_RS18095 at 181.195 kb on - strand, within EX31_RS18095 at 181.233 kb on + strand, within EX31_RS18095 at 181.234 kb on - strand, within EX31_RS18095 at 181.310 kb on - strand, within EX31_RS18095 at 181.320 kb on + strand, within EX31_RS18095 at 181.320 kb on + strand, within EX31_RS18095 at 181.398 kb on + strand, within EX31_RS18095 at 181.399 kb on - strand, within EX31_RS18095 at 181.399 kb on - strand, within EX31_RS18095
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 178,868 + EX31_RS18085 0.12 -3.2 178,869 - EX31_RS18085 0.12 +0.3 179,022 - EX31_RS18085 0.26 -0.2 179,059 + EX31_RS18085 0.30 +0.6 179,060 - EX31_RS18085 0.30 +1.7 179,060 - EX31_RS18085 0.30 -1.3 179,067 + EX31_RS18085 0.30 +0.4 179,067 + EX31_RS18085 0.30 -1.0 179,067 + EX31_RS18085 0.30 -0.5 179,067 + EX31_RS18085 0.30 -0.9 179,067 + EX31_RS18085 0.30 +1.0 179,068 - EX31_RS18085 0.31 -0.7 179,068 - EX31_RS18085 0.31 +0.2 179,071 + EX31_RS18085 0.31 +0.6 179,071 + EX31_RS18085 0.31 -0.2 179,072 - EX31_RS18085 0.31 +0.9 179,072 - EX31_RS18085 0.31 -2.3 179,169 + EX31_RS18085 0.40 +1.4 179,203 + EX31_RS18085 0.43 +0.1 179,203 + EX31_RS18085 0.43 +0.9 179,277 + EX31_RS18085 0.49 +0.3 179,278 - EX31_RS18085 0.50 -0.7 179,352 - EX31_RS18085 0.56 +0.7 179,555 + EX31_RS18085 0.75 +0.5 179,606 + EX31_RS18085 0.79 -0.7 179,606 + EX31_RS18085 0.79 +0.6 179,606 + EX31_RS18085 0.79 +0.8 179,607 - EX31_RS18085 0.79 +0.6 179,607 - EX31_RS18085 0.79 -0.3 179,677 + EX31_RS18085 0.86 +0.3 179,677 + EX31_RS18085 0.86 -0.1 179,677 + EX31_RS18085 0.86 -1.3 179,677 + EX31_RS18085 0.86 +0.4 179,677 + EX31_RS18085 0.86 +0.3 179,677 + EX31_RS18085 0.86 +1.0 179,678 - EX31_RS18085 0.86 -0.2 179,678 - EX31_RS18085 0.86 -1.5 179,681 + EX31_RS18085 0.86 +0.8 179,681 + EX31_RS18085 0.86 +0.5 179,788 + +0.5 179,788 + +0.6 179,788 + +0.1 179,789 - -0.4 179,791 + +0.7 179,798 + -0.8 179,798 + -0.2 179,798 + -1.3 179,798 + -2.4 179,798 + +0.6 179,798 + +1.4 179,799 - +0.7 179,799 - -0.5 179,799 - -1.6 179,799 - +1.6 179,799 - -0.2 179,804 + -2.6 179,832 + +0.9 179,840 + +0.3 179,840 + -2.2 179,840 + -1.5 179,840 + +0.5 179,841 - +0.1 179,841 - -1.1 179,841 - +0.3 179,841 - +1.5 179,841 - -0.6 179,844 + -1.8 179,844 + -1.0 179,867 - +0.2 179,881 + +0.6 179,939 + EX31_RS18090 0.13 -1.1 179,940 - EX31_RS18090 0.14 -1.5 179,943 - EX31_RS18090 0.14 +0.1 180,014 + EX31_RS18090 0.27 -0.6 180,015 - EX31_RS18090 0.27 +1.2 180,037 - EX31_RS18090 0.31 +1.7 180,037 - EX31_RS18090 0.31 -0.9 180,215 + EX31_RS18090 0.64 -0.6 180,245 - EX31_RS18090 0.69 -0.9 180,276 - EX31_RS18090 0.75 -0.8 180,354 - EX31_RS18090 0.89 -0.2 180,354 - EX31_RS18090 0.89 -0.2 180,372 - -0.2 180,380 - -0.1 180,380 - -1.6 180,393 - -0.4 180,471 - +0.5 180,544 + +0.5 180,561 + +0.2 180,561 + -0.2 180,562 - +0.0 180,562 - -0.8 180,562 - -1.7 180,562 - +1.0 180,565 + -0.8 180,565 + +0.3 180,599 + -2.6 180,600 - -0.1 180,603 + -0.4 180,604 - +1.0 180,604 - -1.1 180,615 + -0.3 180,616 - +1.2 180,616 - -0.8 180,616 - -1.8 180,667 + -1.7 180,668 - +0.8 180,668 - -0.1 180,751 + EX31_RS18095 0.15 -0.4 180,751 + EX31_RS18095 0.15 -2.1 180,871 - EX31_RS18095 0.27 +1.5 180,898 - EX31_RS18095 0.30 -0.3 180,978 - EX31_RS18095 0.38 -1.0 180,978 - EX31_RS18095 0.38 +0.0 180,997 + EX31_RS18095 0.39 -0.9 180,998 - EX31_RS18095 0.40 +1.4 181,067 - EX31_RS18095 0.46 +0.0 181,105 - EX31_RS18095 0.50 -1.7 181,105 - EX31_RS18095 0.50 -2.0 181,123 + EX31_RS18095 0.52 +0.1 181,124 - EX31_RS18095 0.52 -0.2 181,124 - EX31_RS18095 0.52 -1.1 181,124 - EX31_RS18095 0.52 -1.2 181,134 + EX31_RS18095 0.53 -0.3 181,135 - EX31_RS18095 0.53 +1.0 181,135 - EX31_RS18095 0.53 +0.4 181,145 + EX31_RS18095 0.54 -1.0 181,173 + EX31_RS18095 0.57 -3.3 181,173 + EX31_RS18095 0.57 -1.0 181,180 - EX31_RS18095 0.58 -1.7 181,192 - EX31_RS18095 0.59 -2.9 181,195 - EX31_RS18095 0.59 -2.3 181,233 + EX31_RS18095 0.63 -0.9 181,234 - EX31_RS18095 0.63 -1.1 181,310 - EX31_RS18095 0.70 -2.5 181,320 + EX31_RS18095 0.71 -1.3 181,320 + EX31_RS18095 0.71 -0.0 181,398 + EX31_RS18095 0.79 -1.0 181,399 - EX31_RS18095 0.79 -0.0 181,399 - EX31_RS18095 0.79 +2.1
Or see this region's nucleotide sequence