Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS17990 and EX31_RS17995 are separated by 127 nucleotides EX31_RS17995 and EX31_RS18000 are separated by 82 nucleotides EX31_RS18000 and EX31_RS18005 are separated by 188 nucleotides
EX31_RS17990: EX31_RS17990 - 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI, at 155,998 to 157,191
_RS17990
EX31_RS17995: EX31_RS17995 - heat shock protein HspQ, at 157,319 to 157,636
_RS17995
EX31_RS18000: EX31_RS18000 - CoA-binding protein, at 157,719 to 158,132
_RS18000
EX31_RS18005: EX31_RS18005 - DUF2057 family protein, at 158,321 to 158,980
_RS18005
Position (kb) 157
158 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 156.339 kb on + strand, within EX31_RS17990 at 156.339 kb on + strand, within EX31_RS17990 at 156.518 kb on + strand, within EX31_RS17990 at 156.518 kb on + strand, within EX31_RS17990 at 156.518 kb on + strand, within EX31_RS17990 at 156.518 kb on + strand, within EX31_RS17990 at 156.518 kb on + strand, within EX31_RS17990 at 156.518 kb on + strand, within EX31_RS17990 at 156.518 kb on + strand, within EX31_RS17990 at 156.585 kb on + strand, within EX31_RS17990 at 156.585 kb on + strand, within EX31_RS17990 at 156.610 kb on + strand, within EX31_RS17990 at 156.610 kb on + strand, within EX31_RS17990 at 156.611 kb on - strand, within EX31_RS17990 at 156.611 kb on - strand, within EX31_RS17990 at 156.611 kb on - strand, within EX31_RS17990 at 156.645 kb on + strand, within EX31_RS17990 at 156.645 kb on + strand, within EX31_RS17990 at 156.646 kb on - strand, within EX31_RS17990 at 156.646 kb on - strand, within EX31_RS17990 at 156.646 kb on - strand, within EX31_RS17990 at 156.646 kb on - strand, within EX31_RS17990 at 156.649 kb on + strand, within EX31_RS17990 at 156.649 kb on + strand, within EX31_RS17990 at 156.649 kb on + strand, within EX31_RS17990 at 156.649 kb on + strand, within EX31_RS17990 at 156.685 kb on + strand, within EX31_RS17990 at 156.726 kb on + strand, within EX31_RS17990 at 156.726 kb on + strand, within EX31_RS17990 at 156.726 kb on + strand, within EX31_RS17990 at 156.727 kb on - strand, within EX31_RS17990 at 156.853 kb on - strand, within EX31_RS17990 at 156.853 kb on - strand, within EX31_RS17990 at 156.960 kb on + strand, within EX31_RS17990 at 156.960 kb on + strand, within EX31_RS17990 at 156.960 kb on + strand, within EX31_RS17990 at 156.960 kb on + strand, within EX31_RS17990 at 156.961 kb on - strand, within EX31_RS17990 at 156.963 kb on + strand, within EX31_RS17990 at 156.963 kb on + strand, within EX31_RS17990 at 156.963 kb on + strand, within EX31_RS17990 at 156.963 kb on + strand, within EX31_RS17990 at 156.963 kb on + strand, within EX31_RS17990 at 156.963 kb on + strand, within EX31_RS17990 at 156.964 kb on - strand, within EX31_RS17990 at 157.041 kb on - strand, within EX31_RS17990 at 157.154 kb on + strand at 157.154 kb on + strand at 157.154 kb on + strand at 157.155 kb on - strand at 157.155 kb on - strand at 157.155 kb on - strand at 157.197 kb on + strand at 157.198 kb on - strand at 157.198 kb on - strand at 157.198 kb on - strand at 157.246 kb on + strand at 157.276 kb on + strand at 157.284 kb on + strand at 157.285 kb on - strand at 157.285 kb on - strand at 157.286 kb on + strand at 157.286 kb on + strand at 157.286 kb on + strand at 157.286 kb on + strand at 157.286 kb on + strand at 157.286 kb on + strand at 157.286 kb on + strand at 157.286 kb on + strand at 157.287 kb on - strand at 157.318 kb on + strand at 157.334 kb on + strand at 157.334 kb on + strand at 157.334 kb on + strand at 157.334 kb on + strand at 157.334 kb on + strand at 157.335 kb on - strand at 157.368 kb on + strand, within EX31_RS17995 at 157.368 kb on + strand, within EX31_RS17995 at 157.373 kb on + strand, within EX31_RS17995 at 157.407 kb on - strand, within EX31_RS17995 at 157.407 kb on - strand, within EX31_RS17995 at 157.417 kb on + strand, within EX31_RS17995 at 157.517 kb on + strand, within EX31_RS17995 at 157.517 kb on + strand, within EX31_RS17995 at 157.517 kb on + strand, within EX31_RS17995 at 157.517 kb on + strand, within EX31_RS17995 at 157.518 kb on - strand, within EX31_RS17995 at 157.611 kb on + strand at 157.612 kb on - strand at 157.612 kb on - strand at 157.630 kb on + strand at 157.630 kb on + strand at 157.631 kb on - strand at 157.720 kb on + strand at 157.882 kb on + strand, within EX31_RS18000 at 157.916 kb on + strand, within EX31_RS18000 at 157.917 kb on - strand, within EX31_RS18000 at 157.917 kb on - strand, within EX31_RS18000 at 157.917 kb on - strand, within EX31_RS18000 at 157.917 kb on - strand, within EX31_RS18000 at 157.917 kb on - strand, within EX31_RS18000 at 157.921 kb on - strand, within EX31_RS18000 at 157.951 kb on + strand, within EX31_RS18000 at 157.951 kb on + strand, within EX31_RS18000 at 157.995 kb on + strand, within EX31_RS18000 at 158.025 kb on + strand, within EX31_RS18000 at 158.026 kb on - strand, within EX31_RS18000 at 158.026 kb on - strand, within EX31_RS18000 at 158.026 kb on - strand, within EX31_RS18000 at 158.029 kb on + strand, within EX31_RS18000 at 158.030 kb on - strand, within EX31_RS18000 at 158.118 kb on - strand at 158.119 kb on + strand at 158.154 kb on + strand at 158.154 kb on + strand at 158.161 kb on + strand at 158.161 kb on + strand at 158.162 kb on - strand at 158.162 kb on - strand at 158.162 kb on - strand at 158.162 kb on - strand at 158.162 kb on - strand at 158.162 kb on - strand at 158.162 kb on - strand at 158.162 kb on - strand at 158.162 kb on - strand at 158.196 kb on + strand at 158.197 kb on - strand at 158.197 kb on - strand at 158.239 kb on - strand at 158.283 kb on - strand at 158.285 kb on + strand at 158.304 kb on + strand at 158.304 kb on + strand at 158.304 kb on + strand at 158.305 kb on - strand at 158.392 kb on + strand, within EX31_RS18005 at 158.392 kb on + strand, within EX31_RS18005 at 158.393 kb on - strand, within EX31_RS18005 at 158.555 kb on + strand, within EX31_RS18005 at 158.555 kb on + strand, within EX31_RS18005 at 158.556 kb on - strand, within EX31_RS18005 at 158.556 kb on - strand, within EX31_RS18005 at 158.597 kb on - strand, within EX31_RS18005
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 156,339 + EX31_RS17990 0.29 +0.7 156,339 + EX31_RS17990 0.29 +0.0 156,518 + EX31_RS17990 0.44 -0.3 156,518 + EX31_RS17990 0.44 +0.3 156,518 + EX31_RS17990 0.44 +0.4 156,518 + EX31_RS17990 0.44 +0.8 156,518 + EX31_RS17990 0.44 -0.1 156,518 + EX31_RS17990 0.44 -2.1 156,518 + EX31_RS17990 0.44 +1.4 156,585 + EX31_RS17990 0.49 -0.9 156,585 + EX31_RS17990 0.49 -0.6 156,610 + EX31_RS17990 0.51 -0.4 156,610 + EX31_RS17990 0.51 -0.2 156,611 - EX31_RS17990 0.51 +0.3 156,611 - EX31_RS17990 0.51 +0.9 156,611 - EX31_RS17990 0.51 +0.3 156,645 + EX31_RS17990 0.54 -1.0 156,645 + EX31_RS17990 0.54 -0.9 156,646 - EX31_RS17990 0.54 -0.1 156,646 - EX31_RS17990 0.54 +0.1 156,646 - EX31_RS17990 0.54 +0.3 156,646 - EX31_RS17990 0.54 +0.5 156,649 + EX31_RS17990 0.55 +0.2 156,649 + EX31_RS17990 0.55 +1.0 156,649 + EX31_RS17990 0.55 -0.5 156,649 + EX31_RS17990 0.55 -0.2 156,685 + EX31_RS17990 0.58 +0.5 156,726 + EX31_RS17990 0.61 +0.4 156,726 + EX31_RS17990 0.61 +0.1 156,726 + EX31_RS17990 0.61 +0.8 156,727 - EX31_RS17990 0.61 -0.6 156,853 - EX31_RS17990 0.72 +0.1 156,853 - EX31_RS17990 0.72 -0.5 156,960 + EX31_RS17990 0.81 -0.5 156,960 + EX31_RS17990 0.81 +0.5 156,960 + EX31_RS17990 0.81 -0.8 156,960 + EX31_RS17990 0.81 -0.1 156,961 - EX31_RS17990 0.81 +0.2 156,963 + EX31_RS17990 0.81 +0.3 156,963 + EX31_RS17990 0.81 -0.1 156,963 + EX31_RS17990 0.81 -0.9 156,963 + EX31_RS17990 0.81 -0.7 156,963 + EX31_RS17990 0.81 +1.0 156,963 + EX31_RS17990 0.81 +0.2 156,964 - EX31_RS17990 0.81 -3.5 157,041 - EX31_RS17990 0.87 -0.4 157,154 + -0.8 157,154 + +0.9 157,154 + -0.7 157,155 - +1.1 157,155 - -1.6 157,155 - +0.9 157,197 + +0.5 157,198 - -2.3 157,198 - +0.7 157,198 - -1.0 157,246 + +0.2 157,276 + -0.9 157,284 + -2.2 157,285 - -0.2 157,285 - -0.1 157,286 + +0.8 157,286 + +0.1 157,286 + +0.6 157,286 + -0.3 157,286 + -0.8 157,286 + -0.6 157,286 + +0.5 157,286 + -0.0 157,287 - +0.5 157,318 + +0.3 157,334 + +0.8 157,334 + +0.4 157,334 + +0.4 157,334 + +0.5 157,334 + +0.4 157,335 - +1.8 157,368 + EX31_RS17995 0.15 -1.6 157,368 + EX31_RS17995 0.15 +0.2 157,373 + EX31_RS17995 0.17 -2.7 157,407 - EX31_RS17995 0.28 -1.4 157,407 - EX31_RS17995 0.28 -1.7 157,417 + EX31_RS17995 0.31 -2.5 157,517 + EX31_RS17995 0.62 -0.0 157,517 + EX31_RS17995 0.62 -0.5 157,517 + EX31_RS17995 0.62 +1.1 157,517 + EX31_RS17995 0.62 +0.5 157,518 - EX31_RS17995 0.63 -0.7 157,611 + +0.2 157,612 - +0.4 157,612 - +0.2 157,630 + +0.2 157,630 + -0.1 157,631 - -0.1 157,720 + +0.8 157,882 + EX31_RS18000 0.39 +0.6 157,916 + EX31_RS18000 0.48 +0.2 157,917 - EX31_RS18000 0.48 +0.5 157,917 - EX31_RS18000 0.48 -0.8 157,917 - EX31_RS18000 0.48 +1.1 157,917 - EX31_RS18000 0.48 -0.7 157,917 - EX31_RS18000 0.48 -1.3 157,921 - EX31_RS18000 0.49 +0.4 157,951 + EX31_RS18000 0.56 +0.7 157,951 + EX31_RS18000 0.56 +0.9 157,995 + EX31_RS18000 0.67 -1.2 158,025 + EX31_RS18000 0.74 +0.1 158,026 - EX31_RS18000 0.74 +1.2 158,026 - EX31_RS18000 0.74 +0.1 158,026 - EX31_RS18000 0.74 +0.9 158,029 + EX31_RS18000 0.75 +0.7 158,030 - EX31_RS18000 0.75 +0.9 158,118 - +0.7 158,119 + +0.1 158,154 + +0.8 158,154 + +0.3 158,161 + -1.7 158,161 + -0.1 158,162 - +1.5 158,162 - +1.3 158,162 - -3.5 158,162 - +1.0 158,162 - +0.9 158,162 - -1.9 158,162 - -0.4 158,162 - +0.0 158,162 - -0.3 158,196 + -0.1 158,197 - +0.2 158,197 - -1.4 158,239 - -0.1 158,283 - +1.6 158,285 + -2.6 158,304 + +0.7 158,304 + +0.2 158,304 + +0.0 158,305 - -0.0 158,392 + EX31_RS18005 0.11 -1.0 158,392 + EX31_RS18005 0.11 -0.3 158,393 - EX31_RS18005 0.11 -0.2 158,555 + EX31_RS18005 0.35 -1.7 158,555 + EX31_RS18005 0.35 +0.8 158,556 - EX31_RS18005 0.36 -2.3 158,556 - EX31_RS18005 0.36 -0.8 158,597 - EX31_RS18005 0.42 -0.1
Or see this region's nucleotide sequence