Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS16670 and EX31_RS16675 are separated by 99 nucleotides EX31_RS16675 and EX31_RS16680 are separated by 55 nucleotides EX31_RS16680 and EX31_RS16685 overlap by 4 nucleotides
EX31_RS16670: EX31_RS16670 - NAD(P)-dependent alcohol dehydrogenase, at 16,779 to 17,837
_RS16670
EX31_RS16675: EX31_RS16675 - histidine utilization repressor, at 17,937 to 18,686
_RS16675
EX31_RS16680: EX31_RS16680 - enoyl-CoA hydratase, at 18,742 to 19,512
_RS16680
EX31_RS16685: EX31_RS16685 - 3-hydroxyacyl-CoA dehydrogenase family protein, at 19,509 to 20,402
_RS16685
Position (kb) 17
18
19 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 16.990 kb on - strand, within EX31_RS16670 at 17.002 kb on - strand, within EX31_RS16670 at 17.051 kb on + strand, within EX31_RS16670 at 17.187 kb on + strand, within EX31_RS16670 at 17.188 kb on - strand, within EX31_RS16670 at 17.274 kb on - strand, within EX31_RS16670 at 17.395 kb on - strand, within EX31_RS16670 at 17.437 kb on - strand, within EX31_RS16670 at 17.450 kb on - strand, within EX31_RS16670 at 17.494 kb on + strand, within EX31_RS16670 at 17.674 kb on + strand, within EX31_RS16670 at 17.674 kb on + strand, within EX31_RS16670 at 17.674 kb on + strand, within EX31_RS16670 at 17.675 kb on - strand, within EX31_RS16670 at 17.675 kb on - strand, within EX31_RS16670 at 17.703 kb on - strand, within EX31_RS16670 at 17.706 kb on + strand, within EX31_RS16670 at 17.707 kb on - strand, within EX31_RS16670 at 17.707 kb on - strand, within EX31_RS16670 at 17.756 kb on + strand at 17.756 kb on + strand at 17.813 kb on - strand at 17.869 kb on - strand at 17.873 kb on - strand at 17.874 kb on + strand at 17.875 kb on - strand at 17.945 kb on + strand at 17.980 kb on + strand at 18.110 kb on + strand, within EX31_RS16675 at 18.110 kb on + strand, within EX31_RS16675 at 18.111 kb on - strand, within EX31_RS16675 at 18.111 kb on - strand, within EX31_RS16675 at 18.184 kb on - strand, within EX31_RS16675 at 18.470 kb on - strand, within EX31_RS16675 at 18.504 kb on + strand, within EX31_RS16675 at 18.621 kb on - strand at 18.622 kb on + strand at 18.622 kb on + strand at 18.623 kb on - strand at 18.623 kb on - strand at 18.623 kb on - strand at 18.700 kb on + strand at 18.701 kb on - strand at 18.701 kb on - strand at 18.701 kb on - strand at 18.701 kb on - strand at 18.743 kb on + strand at 18.843 kb on - strand, within EX31_RS16680 at 19.280 kb on + strand, within EX31_RS16680 at 19.281 kb on - strand, within EX31_RS16680 at 19.281 kb on - strand, within EX31_RS16680 at 19.378 kb on - strand, within EX31_RS16680
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 16,990 - EX31_RS16670 0.20 +0.1 17,002 - EX31_RS16670 0.21 +0.6 17,051 + EX31_RS16670 0.26 +0.0 17,187 + EX31_RS16670 0.39 +0.4 17,188 - EX31_RS16670 0.39 -0.4 17,274 - EX31_RS16670 0.47 +0.5 17,395 - EX31_RS16670 0.58 +0.7 17,437 - EX31_RS16670 0.62 +0.1 17,450 - EX31_RS16670 0.63 +0.5 17,494 + EX31_RS16670 0.68 +0.3 17,674 + EX31_RS16670 0.85 -0.0 17,674 + EX31_RS16670 0.85 -2.1 17,674 + EX31_RS16670 0.85 -2.8 17,675 - EX31_RS16670 0.85 -1.8 17,675 - EX31_RS16670 0.85 -1.1 17,703 - EX31_RS16670 0.87 +0.9 17,706 + EX31_RS16670 0.88 -0.1 17,707 - EX31_RS16670 0.88 -0.4 17,707 - EX31_RS16670 0.88 +0.8 17,756 + -0.9 17,756 + -2.8 17,813 - -0.3 17,869 - -2.3 17,873 - -1.3 17,874 + +0.6 17,875 - +0.2 17,945 + -0.0 17,980 + -0.2 18,110 + EX31_RS16675 0.23 +0.4 18,110 + EX31_RS16675 0.23 -0.9 18,111 - EX31_RS16675 0.23 -2.4 18,111 - EX31_RS16675 0.23 -1.4 18,184 - EX31_RS16675 0.33 +0.9 18,470 - EX31_RS16675 0.71 -0.7 18,504 + EX31_RS16675 0.76 -1.3 18,621 - -1.4 18,622 + +0.6 18,622 + +1.1 18,623 - -0.4 18,623 - -1.2 18,623 - -0.8 18,700 + -1.9 18,701 - -0.0 18,701 - +1.1 18,701 - -0.2 18,701 - +0.6 18,743 + -1.9 18,843 - EX31_RS16680 0.13 -0.8 19,280 + EX31_RS16680 0.70 -0.8 19,281 - EX31_RS16680 0.70 +0.1 19,281 - EX31_RS16680 0.70 -0.4 19,378 - EX31_RS16680 0.82 +1.0
Or see this region's nucleotide sequence