Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS16260 and EX31_RS16265 are separated by 664 nucleotides EX31_RS16265 and EX31_RS16270 are separated by 99 nucleotides EX31_RS16270 and EX31_RS16275 are separated by 57 nucleotides
EX31_RS16260: EX31_RS16260 - type II toxin-antitoxin system MqsA family antitoxin, at 2,958 to 3,359
_RS16260
EX31_RS16265: EX31_RS16265 - hypothetical protein, at 4,024 to 4,389
_RS16265
EX31_RS16270: EX31_RS16270 - DUF945 domain-containing protein, at 4,489 to 5,313
_RS16270
EX31_RS16275: EX31_RS16275 - hypothetical protein, at 5,371 to 5,661
_RS16275
Position (kb) 4
5 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 3.104 kb on + strand, within EX31_RS16260 at 3.104 kb on + strand, within EX31_RS16260 at 3.104 kb on + strand, within EX31_RS16260 at 3.104 kb on + strand, within EX31_RS16260 at 3.111 kb on + strand, within EX31_RS16260 at 3.111 kb on + strand, within EX31_RS16260 at 3.111 kb on + strand, within EX31_RS16260 at 3.111 kb on + strand, within EX31_RS16260 at 3.111 kb on + strand, within EX31_RS16260 at 3.111 kb on + strand, within EX31_RS16260 at 3.111 kb on + strand, within EX31_RS16260 at 3.111 kb on + strand, within EX31_RS16260 at 3.111 kb on + strand, within EX31_RS16260 at 3.111 kb on + strand, within EX31_RS16260 at 3.111 kb on + strand, within EX31_RS16260 at 3.111 kb on + strand, within EX31_RS16260 at 3.111 kb on + strand, within EX31_RS16260 at 3.111 kb on + strand, within EX31_RS16260 at 3.111 kb on + strand, within EX31_RS16260 at 3.111 kb on + strand, within EX31_RS16260 at 3.111 kb on + strand, within EX31_RS16260 at 3.112 kb on - strand, within EX31_RS16260 at 3.125 kb on + strand, within EX31_RS16260 at 3.125 kb on + strand, within EX31_RS16260 at 3.171 kb on + strand, within EX31_RS16260 at 3.171 kb on + strand, within EX31_RS16260 at 3.171 kb on + strand, within EX31_RS16260 at 3.171 kb on + strand, within EX31_RS16260 at 3.171 kb on + strand, within EX31_RS16260 at 3.171 kb on + strand, within EX31_RS16260 at 3.171 kb on + strand, within EX31_RS16260 at 3.171 kb on + strand, within EX31_RS16260 at 3.172 kb on - strand, within EX31_RS16260 at 3.188 kb on + strand, within EX31_RS16260 at 3.188 kb on + strand, within EX31_RS16260 at 3.269 kb on + strand, within EX31_RS16260 at 3.310 kb on + strand, within EX31_RS16260 at 3.331 kb on + strand at 3.331 kb on + strand at 3.357 kb on + strand at 3.357 kb on + strand at 3.357 kb on + strand at 3.357 kb on + strand at 3.357 kb on + strand at 3.357 kb on + strand at 3.357 kb on + strand at 3.357 kb on + strand at 3.357 kb on + strand at 3.357 kb on + strand at 3.357 kb on + strand at 3.358 kb on - strand at 3.358 kb on - strand at 3.358 kb on - strand at 3.358 kb on - strand at 3.358 kb on - strand at 3.358 kb on - strand at 3.358 kb on - strand at 3.358 kb on - strand at 3.358 kb on - strand at 3.358 kb on - strand at 3.358 kb on - strand at 3.358 kb on - strand at 3.358 kb on - strand at 3.469 kb on + strand at 3.469 kb on + strand at 3.469 kb on + strand at 3.470 kb on - strand at 3.470 kb on - strand at 3.470 kb on - strand at 3.470 kb on - strand at 3.525 kb on + strand at 3.525 kb on + strand at 3.525 kb on + strand at 3.526 kb on - strand at 3.882 kb on + strand at 3.882 kb on + strand at 3.882 kb on + strand at 3.883 kb on - strand at 3.958 kb on + strand at 4.002 kb on + strand at 4.002 kb on + strand at 4.002 kb on + strand at 4.002 kb on + strand at 4.114 kb on - strand, within EX31_RS16265 at 4.114 kb on - strand, within EX31_RS16265 at 4.119 kb on + strand, within EX31_RS16265 at 4.219 kb on + strand, within EX31_RS16265 at 4.220 kb on - strand, within EX31_RS16265 at 4.220 kb on - strand, within EX31_RS16265 at 4.220 kb on - strand, within EX31_RS16265 at 4.225 kb on + strand, within EX31_RS16265 at 4.225 kb on + strand, within EX31_RS16265 at 4.225 kb on + strand, within EX31_RS16265 at 4.226 kb on - strand, within EX31_RS16265 at 4.226 kb on - strand, within EX31_RS16265 at 4.226 kb on - strand, within EX31_RS16265 at 4.226 kb on - strand, within EX31_RS16265 at 4.226 kb on - strand, within EX31_RS16265 at 4.226 kb on - strand, within EX31_RS16265 at 4.226 kb on - strand, within EX31_RS16265 at 4.226 kb on - strand, within EX31_RS16265 at 4.292 kb on + strand, within EX31_RS16265 at 4.292 kb on + strand, within EX31_RS16265 at 4.293 kb on - strand, within EX31_RS16265 at 4.293 kb on - strand, within EX31_RS16265 at 4.293 kb on - strand, within EX31_RS16265 at 4.293 kb on - strand, within EX31_RS16265 at 4.293 kb on - strand, within EX31_RS16265 at 4.340 kb on + strand, within EX31_RS16265 at 4.340 kb on + strand, within EX31_RS16265 at 4.341 kb on - strand, within EX31_RS16265 at 4.357 kb on + strand at 4.387 kb on + strand at 4.387 kb on + strand at 4.387 kb on + strand at 4.393 kb on + strand at 4.393 kb on + strand at 4.394 kb on - strand at 4.394 kb on - strand at 4.420 kb on + strand at 4.458 kb on + strand at 4.458 kb on + strand at 4.458 kb on + strand at 4.459 kb on - strand at 4.459 kb on - strand at 4.488 kb on + strand at 4.488 kb on + strand at 4.489 kb on - strand at 4.496 kb on + strand at 4.496 kb on + strand at 4.618 kb on + strand, within EX31_RS16270 at 4.618 kb on + strand, within EX31_RS16270 at 4.619 kb on - strand, within EX31_RS16270 at 4.619 kb on - strand, within EX31_RS16270 at 4.620 kb on + strand, within EX31_RS16270 at 4.620 kb on + strand, within EX31_RS16270 at 4.620 kb on + strand, within EX31_RS16270 at 4.621 kb on - strand, within EX31_RS16270 at 4.621 kb on - strand, within EX31_RS16270 at 4.621 kb on - strand, within EX31_RS16270 at 4.621 kb on - strand, within EX31_RS16270 at 4.624 kb on + strand, within EX31_RS16270 at 4.624 kb on + strand, within EX31_RS16270 at 4.624 kb on + strand, within EX31_RS16270 at 4.624 kb on + strand, within EX31_RS16270 at 4.624 kb on + strand, within EX31_RS16270 at 4.624 kb on + strand, within EX31_RS16270 at 4.624 kb on + strand, within EX31_RS16270 at 4.624 kb on + strand, within EX31_RS16270 at 4.624 kb on + strand, within EX31_RS16270 at 4.624 kb on + strand, within EX31_RS16270 at 4.624 kb on + strand, within EX31_RS16270 at 4.624 kb on + strand, within EX31_RS16270 at 4.624 kb on + strand, within EX31_RS16270 at 4.624 kb on + strand, within EX31_RS16270 at 4.625 kb on - strand, within EX31_RS16270 at 4.625 kb on - strand, within EX31_RS16270 at 4.625 kb on - strand, within EX31_RS16270 at 4.625 kb on - strand, within EX31_RS16270 at 4.625 kb on - strand, within EX31_RS16270 at 4.625 kb on - strand, within EX31_RS16270 at 4.625 kb on - strand, within EX31_RS16270 at 4.625 kb on - strand, within EX31_RS16270 at 4.625 kb on - strand, within EX31_RS16270 at 4.625 kb on - strand, within EX31_RS16270 at 4.625 kb on - strand, within EX31_RS16270 at 4.625 kb on - strand, within EX31_RS16270 at 4.625 kb on - strand, within EX31_RS16270 at 4.625 kb on - strand, within EX31_RS16270 at 4.625 kb on - strand, within EX31_RS16270 at 4.625 kb on - strand, within EX31_RS16270 at 4.625 kb on - strand, within EX31_RS16270 at 4.625 kb on - strand, within EX31_RS16270 at 4.625 kb on - strand, within EX31_RS16270 at 4.625 kb on - strand, within EX31_RS16270 at 4.625 kb on - strand, within EX31_RS16270 at 4.625 kb on - strand, within EX31_RS16270 at 4.625 kb on - strand, within EX31_RS16270 at 4.626 kb on + strand, within EX31_RS16270 at 4.626 kb on + strand, within EX31_RS16270 at 4.626 kb on + strand, within EX31_RS16270 at 4.626 kb on + strand, within EX31_RS16270 at 4.626 kb on + strand, within EX31_RS16270 at 4.627 kb on - strand, within EX31_RS16270 at 4.627 kb on - strand, within EX31_RS16270 at 4.797 kb on + strand, within EX31_RS16270 at 4.797 kb on + strand, within EX31_RS16270 at 4.797 kb on + strand, within EX31_RS16270 at 4.798 kb on - strand, within EX31_RS16270 at 4.798 kb on - strand, within EX31_RS16270 at 4.822 kb on + strand, within EX31_RS16270 at 4.823 kb on - strand, within EX31_RS16270 at 4.945 kb on + strand, within EX31_RS16270 at 4.946 kb on - strand, within EX31_RS16270 at 4.946 kb on - strand, within EX31_RS16270 at 4.946 kb on - strand, within EX31_RS16270 at 4.946 kb on - strand, within EX31_RS16270 at 4.989 kb on + strand, within EX31_RS16270 at 4.989 kb on + strand, within EX31_RS16270 at 4.990 kb on - strand, within EX31_RS16270 at 4.990 kb on - strand, within EX31_RS16270 at 4.990 kb on - strand, within EX31_RS16270 at 5.053 kb on + strand, within EX31_RS16270 at 5.053 kb on + strand, within EX31_RS16270 at 5.053 kb on + strand, within EX31_RS16270 at 5.054 kb on - strand, within EX31_RS16270 at 5.054 kb on - strand, within EX31_RS16270 at 5.054 kb on - strand, within EX31_RS16270 at 5.054 kb on - strand, within EX31_RS16270 at 5.054 kb on - strand, within EX31_RS16270 at 5.102 kb on + strand, within EX31_RS16270 at 5.103 kb on - strand, within EX31_RS16270 at 5.103 kb on - strand, within EX31_RS16270 at 5.103 kb on - strand, within EX31_RS16270 at 5.103 kb on - strand, within EX31_RS16270 at 5.103 kb on - strand, within EX31_RS16270 at 5.106 kb on - strand, within EX31_RS16270 at 5.173 kb on - strand, within EX31_RS16270 at 5.261 kb on + strand at 5.262 kb on - strand at 5.325 kb on + strand at 5.358 kb on + strand at 5.358 kb on + strand at 5.358 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 3,104 + EX31_RS16260 0.36 +0.2 3,104 + EX31_RS16260 0.36 -0.4 3,104 + EX31_RS16260 0.36 -0.3 3,104 + EX31_RS16260 0.36 -0.1 3,111 + EX31_RS16260 0.38 +0.5 3,111 + EX31_RS16260 0.38 -2.2 3,111 + EX31_RS16260 0.38 +0.1 3,111 + EX31_RS16260 0.38 -3.2 3,111 + EX31_RS16260 0.38 -0.7 3,111 + EX31_RS16260 0.38 +0.0 3,111 + EX31_RS16260 0.38 +0.1 3,111 + EX31_RS16260 0.38 +0.0 3,111 + EX31_RS16260 0.38 -0.5 3,111 + EX31_RS16260 0.38 -0.1 3,111 + EX31_RS16260 0.38 +0.5 3,111 + EX31_RS16260 0.38 +0.9 3,111 + EX31_RS16260 0.38 +0.2 3,111 + EX31_RS16260 0.38 +0.1 3,111 + EX31_RS16260 0.38 +0.2 3,111 + EX31_RS16260 0.38 -0.1 3,111 + EX31_RS16260 0.38 +1.2 3,112 - EX31_RS16260 0.38 -0.9 3,125 + EX31_RS16260 0.42 -0.8 3,125 + EX31_RS16260 0.42 -0.0 3,171 + EX31_RS16260 0.53 -0.6 3,171 + EX31_RS16260 0.53 -0.1 3,171 + EX31_RS16260 0.53 -0.3 3,171 + EX31_RS16260 0.53 -0.6 3,171 + EX31_RS16260 0.53 -0.7 3,171 + EX31_RS16260 0.53 +0.1 3,171 + EX31_RS16260 0.53 +0.3 3,171 + EX31_RS16260 0.53 -0.7 3,172 - EX31_RS16260 0.53 -0.9 3,188 + EX31_RS16260 0.57 -0.3 3,188 + EX31_RS16260 0.57 -0.0 3,269 + EX31_RS16260 0.77 -0.1 3,310 + EX31_RS16260 0.88 +0.1 3,331 + -0.7 3,331 + -0.3 3,357 + -1.6 3,357 + -0.1 3,357 + -0.4 3,357 + -0.4 3,357 + +0.3 3,357 + -1.3 3,357 + -0.1 3,357 + +1.0 3,357 + -0.1 3,357 + +0.8 3,357 + -2.5 3,358 - +1.2 3,358 - +1.1 3,358 - -0.8 3,358 - -1.2 3,358 - +0.4 3,358 - -0.6 3,358 - -0.8 3,358 - +0.2 3,358 - +0.5 3,358 - -1.7 3,358 - +0.0 3,358 - +0.0 3,358 - -0.5 3,469 + -0.8 3,469 + +0.4 3,469 + -0.8 3,470 - -0.5 3,470 - +0.8 3,470 - +0.4 3,470 - -3.0 3,525 + -0.0 3,525 + +0.5 3,525 + -0.3 3,526 - -1.4 3,882 + -0.8 3,882 + +0.1 3,882 + -1.0 3,883 - -1.5 3,958 + -2.6 4,002 + +1.4 4,002 + +1.2 4,002 + +0.4 4,002 + -0.9 4,114 - EX31_RS16265 0.25 -2.5 4,114 - EX31_RS16265 0.25 +0.4 4,119 + EX31_RS16265 0.26 -0.2 4,219 + EX31_RS16265 0.53 -0.6 4,220 - EX31_RS16265 0.54 -1.1 4,220 - EX31_RS16265 0.54 +0.4 4,220 - EX31_RS16265 0.54 +0.3 4,225 + EX31_RS16265 0.55 -0.3 4,225 + EX31_RS16265 0.55 -1.5 4,225 + EX31_RS16265 0.55 +0.3 4,226 - EX31_RS16265 0.55 +0.2 4,226 - EX31_RS16265 0.55 -0.6 4,226 - EX31_RS16265 0.55 +0.5 4,226 - EX31_RS16265 0.55 -0.4 4,226 - EX31_RS16265 0.55 -0.9 4,226 - EX31_RS16265 0.55 +1.2 4,226 - EX31_RS16265 0.55 -0.6 4,226 - EX31_RS16265 0.55 -2.5 4,292 + EX31_RS16265 0.73 -1.8 4,292 + EX31_RS16265 0.73 -1.2 4,293 - EX31_RS16265 0.73 -0.9 4,293 - EX31_RS16265 0.73 -0.9 4,293 - EX31_RS16265 0.73 -1.4 4,293 - EX31_RS16265 0.73 +0.0 4,293 - EX31_RS16265 0.73 +0.0 4,340 + EX31_RS16265 0.86 -0.4 4,340 + EX31_RS16265 0.86 -3.9 4,341 - EX31_RS16265 0.87 -0.5 4,357 + +1.0 4,387 + -1.5 4,387 + +0.0 4,387 + +0.8 4,393 + -0.4 4,393 + -0.6 4,394 - +0.5 4,394 - +0.0 4,420 + -0.3 4,458 + -0.3 4,458 + +0.7 4,458 + +3.0 4,459 - +0.6 4,459 - -0.6 4,488 + -2.0 4,488 + +1.0 4,489 - -0.9 4,496 + +0.4 4,496 + -0.6 4,618 + EX31_RS16270 0.16 +0.4 4,618 + EX31_RS16270 0.16 -0.7 4,619 - EX31_RS16270 0.16 +0.2 4,619 - EX31_RS16270 0.16 -1.3 4,620 + EX31_RS16270 0.16 -0.6 4,620 + EX31_RS16270 0.16 +0.6 4,620 + EX31_RS16270 0.16 +0.0 4,621 - EX31_RS16270 0.16 -0.1 4,621 - EX31_RS16270 0.16 -1.2 4,621 - EX31_RS16270 0.16 +0.0 4,621 - EX31_RS16270 0.16 -0.3 4,624 + EX31_RS16270 0.16 +0.5 4,624 + EX31_RS16270 0.16 +0.7 4,624 + EX31_RS16270 0.16 -0.8 4,624 + EX31_RS16270 0.16 -0.6 4,624 + EX31_RS16270 0.16 -2.3 4,624 + EX31_RS16270 0.16 +0.4 4,624 + EX31_RS16270 0.16 -0.1 4,624 + EX31_RS16270 0.16 +0.2 4,624 + EX31_RS16270 0.16 +2.3 4,624 + EX31_RS16270 0.16 +0.1 4,624 + EX31_RS16270 0.16 +1.2 4,624 + EX31_RS16270 0.16 -0.9 4,624 + EX31_RS16270 0.16 -3.5 4,624 + EX31_RS16270 0.16 +1.0 4,625 - EX31_RS16270 0.16 +0.1 4,625 - EX31_RS16270 0.16 -2.4 4,625 - EX31_RS16270 0.16 +1.7 4,625 - EX31_RS16270 0.16 -0.4 4,625 - EX31_RS16270 0.16 +0.2 4,625 - EX31_RS16270 0.16 -0.1 4,625 - EX31_RS16270 0.16 -1.7 4,625 - EX31_RS16270 0.16 -0.2 4,625 - EX31_RS16270 0.16 +0.2 4,625 - EX31_RS16270 0.16 +0.6 4,625 - EX31_RS16270 0.16 +0.0 4,625 - EX31_RS16270 0.16 -0.2 4,625 - EX31_RS16270 0.16 -0.7 4,625 - EX31_RS16270 0.16 +0.0 4,625 - EX31_RS16270 0.16 +0.2 4,625 - EX31_RS16270 0.16 -0.1 4,625 - EX31_RS16270 0.16 -2.1 4,625 - EX31_RS16270 0.16 -0.3 4,625 - EX31_RS16270 0.16 +0.0 4,625 - EX31_RS16270 0.16 +0.3 4,625 - EX31_RS16270 0.16 +0.5 4,625 - EX31_RS16270 0.16 -0.5 4,625 - EX31_RS16270 0.16 +0.1 4,626 + EX31_RS16270 0.17 -1.9 4,626 + EX31_RS16270 0.17 -0.3 4,626 + EX31_RS16270 0.17 +0.7 4,626 + EX31_RS16270 0.17 +1.1 4,626 + EX31_RS16270 0.17 +0.5 4,627 - EX31_RS16270 0.17 -0.2 4,627 - EX31_RS16270 0.17 -2.9 4,797 + EX31_RS16270 0.37 +0.5 4,797 + EX31_RS16270 0.37 -3.4 4,797 + EX31_RS16270 0.37 -0.1 4,798 - EX31_RS16270 0.37 +1.0 4,798 - EX31_RS16270 0.37 -2.2 4,822 + EX31_RS16270 0.40 -0.2 4,823 - EX31_RS16270 0.40 +0.1 4,945 + EX31_RS16270 0.55 +0.5 4,946 - EX31_RS16270 0.55 -1.2 4,946 - EX31_RS16270 0.55 +0.6 4,946 - EX31_RS16270 0.55 -2.4 4,946 - EX31_RS16270 0.55 -0.1 4,989 + EX31_RS16270 0.61 +0.7 4,989 + EX31_RS16270 0.61 +1.7 4,990 - EX31_RS16270 0.61 -0.5 4,990 - EX31_RS16270 0.61 +0.2 4,990 - EX31_RS16270 0.61 -0.7 5,053 + EX31_RS16270 0.68 +0.1 5,053 + EX31_RS16270 0.68 +0.5 5,053 + EX31_RS16270 0.68 +0.5 5,054 - EX31_RS16270 0.68 -1.4 5,054 - EX31_RS16270 0.68 +0.5 5,054 - EX31_RS16270 0.68 -0.8 5,054 - EX31_RS16270 0.68 +0.7 5,054 - EX31_RS16270 0.68 +0.0 5,102 + EX31_RS16270 0.74 -1.7 5,103 - EX31_RS16270 0.74 -0.5 5,103 - EX31_RS16270 0.74 +0.7 5,103 - EX31_RS16270 0.74 +0.4 5,103 - EX31_RS16270 0.74 -1.7 5,103 - EX31_RS16270 0.74 +0.6 5,106 - EX31_RS16270 0.75 +0.4 5,173 - EX31_RS16270 0.83 -2.2 5,261 + -0.2 5,262 - -0.2 5,325 + +0.3 5,358 + +0.1 5,358 + -0.5 5,358 + -1.1
Or see this region's nucleotide sequence