Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS15640 and EX31_RS15645 are separated by 215 nucleotides EX31_RS15645 and EX31_RS15650 overlap by 14 nucleotides
EX31_RS15640: EX31_RS15640 - porphobilinogen synthase, at 26,214 to 27,188
_RS15640
EX31_RS15645: EX31_RS15645 - peptidase domain-containing ABC transporter, at 27,404 to 29,503
_RS15645
EX31_RS15650: EX31_RS15650 - HlyD family secretion protein, at 29,490 to 30,836
_RS15650
Position (kb) 27
28
29
30 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 27.300 kb on + strand at 27.306 kb on - strand at 27.344 kb on + strand at 27.344 kb on + strand at 27.345 kb on - strand at 27.460 kb on + strand at 27.473 kb on - strand at 27.686 kb on - strand, within EX31_RS15645 at 27.686 kb on - strand, within EX31_RS15645 at 27.758 kb on - strand, within EX31_RS15645 at 28.226 kb on - strand, within EX31_RS15645 at 28.324 kb on + strand, within EX31_RS15645 at 28.351 kb on + strand, within EX31_RS15645 at 28.395 kb on - strand, within EX31_RS15645 at 28.503 kb on + strand, within EX31_RS15645 at 28.503 kb on + strand, within EX31_RS15645 at 28.503 kb on + strand, within EX31_RS15645 at 28.503 kb on + strand, within EX31_RS15645 at 28.503 kb on + strand, within EX31_RS15645 at 28.504 kb on - strand, within EX31_RS15645 at 28.504 kb on - strand, within EX31_RS15645 at 28.504 kb on - strand, within EX31_RS15645 at 28.504 kb on - strand, within EX31_RS15645 at 28.527 kb on + strand, within EX31_RS15645 at 28.527 kb on + strand, within EX31_RS15645 at 28.528 kb on - strand, within EX31_RS15645 at 28.528 kb on - strand, within EX31_RS15645 at 28.528 kb on - strand, within EX31_RS15645 at 28.573 kb on - strand, within EX31_RS15645 at 28.573 kb on - strand, within EX31_RS15645 at 28.606 kb on + strand, within EX31_RS15645 at 28.606 kb on + strand, within EX31_RS15645 at 28.606 kb on + strand, within EX31_RS15645 at 28.606 kb on + strand, within EX31_RS15645 at 28.607 kb on - strand, within EX31_RS15645 at 28.607 kb on - strand, within EX31_RS15645 at 28.607 kb on - strand, within EX31_RS15645 at 28.607 kb on - strand, within EX31_RS15645 at 28.607 kb on - strand, within EX31_RS15645 at 28.607 kb on - strand, within EX31_RS15645 at 28.622 kb on - strand, within EX31_RS15645 at 28.622 kb on - strand, within EX31_RS15645 at 28.673 kb on - strand, within EX31_RS15645 at 28.673 kb on - strand, within EX31_RS15645 at 28.778 kb on - strand, within EX31_RS15645 at 28.845 kb on - strand, within EX31_RS15645 at 28.869 kb on - strand, within EX31_RS15645 at 29.051 kb on - strand, within EX31_RS15645 at 29.150 kb on - strand, within EX31_RS15645 at 29.213 kb on - strand, within EX31_RS15645 at 29.213 kb on - strand, within EX31_RS15645 at 29.213 kb on - strand, within EX31_RS15645 at 29.256 kb on - strand, within EX31_RS15645 at 29.327 kb on + strand at 29.328 kb on - strand at 29.335 kb on - strand at 29.458 kb on + strand at 29.561 kb on - strand at 29.561 kb on - strand at 29.675 kb on - strand, within EX31_RS15650 at 29.848 kb on + strand, within EX31_RS15650 at 29.864 kb on + strand, within EX31_RS15650 at 29.865 kb on - strand, within EX31_RS15650 at 29.897 kb on + strand, within EX31_RS15650 at 29.897 kb on + strand, within EX31_RS15650 at 30.194 kb on - strand, within EX31_RS15650 at 30.194 kb on - strand, within EX31_RS15650 at 30.218 kb on + strand, within EX31_RS15650 at 30.218 kb on + strand, within EX31_RS15650 at 30.241 kb on + strand, within EX31_RS15650 at 30.377 kb on + strand, within EX31_RS15650 at 30.428 kb on + strand, within EX31_RS15650 at 30.449 kb on + strand, within EX31_RS15650 at 30.496 kb on - strand, within EX31_RS15650 at 30.496 kb on - strand, within EX31_RS15650
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 27,300 + +1.6 27,306 - +0.5 27,344 + +0.7 27,344 + -0.7 27,345 - -0.1 27,460 + -0.3 27,473 - -1.5 27,686 - EX31_RS15645 0.13 -2.0 27,686 - EX31_RS15645 0.13 +0.1 27,758 - EX31_RS15645 0.17 +0.9 28,226 - EX31_RS15645 0.39 +0.2 28,324 + EX31_RS15645 0.44 +0.5 28,351 + EX31_RS15645 0.45 -1.2 28,395 - EX31_RS15645 0.47 -3.0 28,503 + EX31_RS15645 0.52 -0.0 28,503 + EX31_RS15645 0.52 +1.4 28,503 + EX31_RS15645 0.52 -0.2 28,503 + EX31_RS15645 0.52 -1.1 28,503 + EX31_RS15645 0.52 +0.4 28,504 - EX31_RS15645 0.52 -0.5 28,504 - EX31_RS15645 0.52 +1.1 28,504 - EX31_RS15645 0.52 -1.0 28,504 - EX31_RS15645 0.52 +2.2 28,527 + EX31_RS15645 0.53 +0.7 28,527 + EX31_RS15645 0.53 -0.6 28,528 - EX31_RS15645 0.54 -1.1 28,528 - EX31_RS15645 0.54 -1.7 28,528 - EX31_RS15645 0.54 -0.9 28,573 - EX31_RS15645 0.56 -1.9 28,573 - EX31_RS15645 0.56 -0.7 28,606 + EX31_RS15645 0.57 -0.1 28,606 + EX31_RS15645 0.57 +0.7 28,606 + EX31_RS15645 0.57 +0.4 28,606 + EX31_RS15645 0.57 -0.3 28,607 - EX31_RS15645 0.57 +0.7 28,607 - EX31_RS15645 0.57 +1.2 28,607 - EX31_RS15645 0.57 -0.9 28,607 - EX31_RS15645 0.57 -0.1 28,607 - EX31_RS15645 0.57 +0.7 28,607 - EX31_RS15645 0.57 +0.6 28,622 - EX31_RS15645 0.58 +0.5 28,622 - EX31_RS15645 0.58 -1.4 28,673 - EX31_RS15645 0.60 -1.4 28,673 - EX31_RS15645 0.60 -0.2 28,778 - EX31_RS15645 0.65 +0.3 28,845 - EX31_RS15645 0.69 -1.2 28,869 - EX31_RS15645 0.70 +0.3 29,051 - EX31_RS15645 0.78 +0.8 29,150 - EX31_RS15645 0.83 +1.3 29,213 - EX31_RS15645 0.86 -0.2 29,213 - EX31_RS15645 0.86 -1.1 29,213 - EX31_RS15645 0.86 +0.5 29,256 - EX31_RS15645 0.88 +0.5 29,327 + -0.4 29,328 - +1.8 29,335 - +0.9 29,458 + -1.1 29,561 - -1.0 29,561 - +0.7 29,675 - EX31_RS15650 0.14 +0.0 29,848 + EX31_RS15650 0.27 +1.0 29,864 + EX31_RS15650 0.28 +1.5 29,865 - EX31_RS15650 0.28 -0.2 29,897 + EX31_RS15650 0.30 -0.3 29,897 + EX31_RS15650 0.30 +0.3 30,194 - EX31_RS15650 0.52 +0.7 30,194 - EX31_RS15650 0.52 -1.1 30,218 + EX31_RS15650 0.54 -0.2 30,218 + EX31_RS15650 0.54 -0.1 30,241 + EX31_RS15650 0.56 +0.3 30,377 + EX31_RS15650 0.66 -0.8 30,428 + EX31_RS15650 0.70 -0.4 30,449 + EX31_RS15650 0.71 -0.1 30,496 - EX31_RS15650 0.75 +0.5 30,496 - EX31_RS15650 0.75 -1.5
Or see this region's nucleotide sequence