Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS15255 and EX31_RS15260 are separated by 591 nucleotides EX31_RS15260 and EX31_RS15265 are separated by 298 nucleotides EX31_RS15265 and EX31_RS24975 are separated by 48 nucleotides
EX31_RS15255: EX31_RS15255 - hypothetical protein, at 1,074 to 1,499
_RS15255
EX31_RS15260: EX31_RS15260 - hypothetical protein, at 2,091 to 2,324
_RS15260
EX31_RS15265: EX31_RS15265 - hypothetical protein, at 2,623 to 2,856
_RS15265
EX31_RS24975: EX31_RS24975 - hypothetical protein, at 2,905 to 3,489
_RS24975
Position (kb) 2
3 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1.104 kb on - strand at 1.111 kb on + strand at 1.161 kb on + strand, within EX31_RS15255 at 1.161 kb on + strand, within EX31_RS15255 at 1.161 kb on + strand, within EX31_RS15255 at 1.161 kb on + strand, within EX31_RS15255 at 1.162 kb on - strand, within EX31_RS15255 at 1.162 kb on - strand, within EX31_RS15255 at 1.162 kb on - strand, within EX31_RS15255 at 1.162 kb on - strand, within EX31_RS15255 at 1.162 kb on - strand, within EX31_RS15255 at 1.226 kb on - strand, within EX31_RS15255 at 1.291 kb on + strand, within EX31_RS15255 at 1.303 kb on - strand, within EX31_RS15255 at 1.320 kb on + strand, within EX31_RS15255 at 1.320 kb on + strand, within EX31_RS15255 at 1.320 kb on + strand, within EX31_RS15255 at 1.320 kb on + strand, within EX31_RS15255 at 1.320 kb on + strand, within EX31_RS15255 at 1.320 kb on + strand, within EX31_RS15255 at 1.320 kb on + strand, within EX31_RS15255 at 1.321 kb on - strand, within EX31_RS15255 at 1.321 kb on - strand, within EX31_RS15255 at 1.321 kb on - strand, within EX31_RS15255 at 1.321 kb on - strand, within EX31_RS15255 at 1.321 kb on - strand, within EX31_RS15255 at 1.323 kb on - strand, within EX31_RS15255 at 1.366 kb on - strand, within EX31_RS15255 at 1.366 kb on - strand, within EX31_RS15255 at 1.366 kb on - strand, within EX31_RS15255 at 1.411 kb on + strand, within EX31_RS15255 at 1.411 kb on + strand, within EX31_RS15255 at 1.412 kb on - strand, within EX31_RS15255 at 1.466 kb on + strand at 1.466 kb on + strand at 1.466 kb on + strand at 1.466 kb on + strand at 1.466 kb on + strand at 1.467 kb on - strand at 1.467 kb on - strand at 1.467 kb on - strand at 1.467 kb on - strand at 1.467 kb on - strand at 1.467 kb on - strand at 1.467 kb on - strand at 1.467 kb on - strand at 1.467 kb on - strand at 1.488 kb on + strand at 1.488 kb on + strand at 1.488 kb on + strand at 1.488 kb on + strand at 1.489 kb on - strand at 1.489 kb on - strand at 1.489 kb on - strand at 1.489 kb on - strand at 1.489 kb on - strand at 1.489 kb on - strand at 1.527 kb on - strand at 1.572 kb on - strand at 1.578 kb on + strand at 1.578 kb on + strand at 1.578 kb on + strand at 1.578 kb on + strand at 1.579 kb on - strand at 1.579 kb on - strand at 1.579 kb on - strand at 1.600 kb on - strand at 1.600 kb on - strand at 1.608 kb on + strand at 1.608 kb on + strand at 1.608 kb on + strand at 1.609 kb on - strand at 1.609 kb on - strand at 1.609 kb on - strand at 1.615 kb on - strand at 1.615 kb on - strand at 1.615 kb on - strand at 1.707 kb on + strand at 1.707 kb on + strand at 1.708 kb on - strand at 1.708 kb on - strand at 1.708 kb on - strand at 1.713 kb on + strand at 1.714 kb on - strand at 1.714 kb on - strand at 1.714 kb on - strand at 1.717 kb on + strand at 1.718 kb on - strand at 1.718 kb on - strand at 1.718 kb on - strand at 1.718 kb on - strand at 1.723 kb on - strand at 1.729 kb on + strand at 1.729 kb on + strand at 1.730 kb on - strand at 1.730 kb on - strand at 1.730 kb on - strand at 1.758 kb on + strand at 1.759 kb on - strand at 1.759 kb on - strand at 1.761 kb on - strand at 1.761 kb on - strand at 1.761 kb on - strand at 1.822 kb on - strand at 1.822 kb on - strand at 1.845 kb on + strand at 1.845 kb on + strand at 1.845 kb on + strand at 1.846 kb on - strand at 1.846 kb on - strand at 1.853 kb on + strand at 1.853 kb on + strand at 1.853 kb on + strand at 1.854 kb on - strand at 1.854 kb on - strand at 1.854 kb on - strand at 1.854 kb on - strand at 1.854 kb on - strand at 1.858 kb on + strand at 1.858 kb on + strand at 1.899 kb on - strand at 1.899 kb on - strand at 1.899 kb on - strand at 1.908 kb on + strand at 1.908 kb on + strand at 1.930 kb on + strand at 1.931 kb on - strand at 1.931 kb on - strand at 1.931 kb on - strand at 2.152 kb on + strand, within EX31_RS15260 at 2.152 kb on + strand, within EX31_RS15260 at 2.153 kb on - strand, within EX31_RS15260 at 2.153 kb on - strand, within EX31_RS15260 at 2.153 kb on - strand, within EX31_RS15260 at 2.153 kb on - strand, within EX31_RS15260 at 2.153 kb on - strand, within EX31_RS15260 at 2.315 kb on + strand at 2.316 kb on - strand at 2.316 kb on - strand at 2.344 kb on + strand at 2.344 kb on + strand at 2.344 kb on + strand at 2.344 kb on + strand at 2.345 kb on - strand at 2.357 kb on + strand at 2.358 kb on - strand at 2.529 kb on + strand at 2.530 kb on - strand at 2.596 kb on + strand at 2.596 kb on + strand at 2.596 kb on + strand at 2.597 kb on - strand at 2.597 kb on - strand at 2.597 kb on - strand at 2.597 kb on - strand at 2.597 kb on - strand at 2.624 kb on + strand at 2.625 kb on - strand at 2.625 kb on - strand at 2.704 kb on + strand, within EX31_RS15265 at 2.704 kb on + strand, within EX31_RS15265 at 2.705 kb on - strand, within EX31_RS15265 at 2.734 kb on + strand, within EX31_RS15265 at 2.734 kb on + strand, within EX31_RS15265 at 2.734 kb on + strand, within EX31_RS15265 at 2.735 kb on - strand, within EX31_RS15265 at 2.735 kb on - strand, within EX31_RS15265 at 2.735 kb on - strand, within EX31_RS15265 at 2.735 kb on - strand, within EX31_RS15265 at 2.839 kb on + strand at 2.840 kb on - strand at 2.840 kb on - strand at 2.840 kb on - strand at 2.840 kb on - strand at 2.840 kb on - strand at 2.923 kb on + strand at 3.062 kb on - strand, within EX31_RS24975 at 3.062 kb on - strand, within EX31_RS24975 at 3.062 kb on - strand, within EX31_RS24975 at 3.064 kb on + strand, within EX31_RS24975 at 3.116 kb on + strand, within EX31_RS24975 at 3.117 kb on - strand, within EX31_RS24975 at 3.117 kb on - strand, within EX31_RS24975 at 3.117 kb on - strand, within EX31_RS24975 at 3.140 kb on + strand, within EX31_RS24975 at 3.141 kb on - strand, within EX31_RS24975 at 3.141 kb on - strand, within EX31_RS24975 at 3.141 kb on - strand, within EX31_RS24975 at 3.141 kb on - strand, within EX31_RS24975 at 3.141 kb on - strand, within EX31_RS24975 at 3.141 kb on - strand, within EX31_RS24975 at 3.141 kb on - strand, within EX31_RS24975 at 3.142 kb on + strand, within EX31_RS24975 at 3.142 kb on + strand, within EX31_RS24975 at 3.142 kb on + strand, within EX31_RS24975 at 3.143 kb on - strand, within EX31_RS24975 at 3.143 kb on - strand, within EX31_RS24975 at 3.143 kb on - strand, within EX31_RS24975 at 3.143 kb on - strand, within EX31_RS24975 at 3.143 kb on - strand, within EX31_RS24975 at 3.143 kb on - strand, within EX31_RS24975 at 3.143 kb on - strand, within EX31_RS24975 at 3.143 kb on - strand, within EX31_RS24975 at 3.143 kb on - strand, within EX31_RS24975 at 3.143 kb on - strand, within EX31_RS24975 at 3.210 kb on + strand, within EX31_RS24975 at 3.257 kb on + strand, within EX31_RS24975 at 3.273 kb on + strand, within EX31_RS24975 at 3.273 kb on + strand, within EX31_RS24975 at 3.273 kb on + strand, within EX31_RS24975 at 3.273 kb on + strand, within EX31_RS24975 at 3.274 kb on - strand, within EX31_RS24975 at 3.274 kb on - strand, within EX31_RS24975 at 3.309 kb on + strand, within EX31_RS24975
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 1,104 - -1.9 1,111 + +0.1 1,161 + EX31_RS15255 0.20 -0.5 1,161 + EX31_RS15255 0.20 -1.2 1,161 + EX31_RS15255 0.20 -0.1 1,161 + EX31_RS15255 0.20 -0.6 1,162 - EX31_RS15255 0.21 +0.7 1,162 - EX31_RS15255 0.21 -0.4 1,162 - EX31_RS15255 0.21 +0.1 1,162 - EX31_RS15255 0.21 -0.1 1,162 - EX31_RS15255 0.21 +0.7 1,226 - EX31_RS15255 0.36 -1.1 1,291 + EX31_RS15255 0.51 -0.2 1,303 - EX31_RS15255 0.54 -0.8 1,320 + EX31_RS15255 0.58 +1.1 1,320 + EX31_RS15255 0.58 -0.7 1,320 + EX31_RS15255 0.58 -0.4 1,320 + EX31_RS15255 0.58 -0.1 1,320 + EX31_RS15255 0.58 +0.1 1,320 + EX31_RS15255 0.58 +0.5 1,320 + EX31_RS15255 0.58 -2.1 1,321 - EX31_RS15255 0.58 +0.3 1,321 - EX31_RS15255 0.58 +0.5 1,321 - EX31_RS15255 0.58 +0.1 1,321 - EX31_RS15255 0.58 -0.1 1,321 - EX31_RS15255 0.58 -0.4 1,323 - EX31_RS15255 0.58 -1.1 1,366 - EX31_RS15255 0.69 +0.6 1,366 - EX31_RS15255 0.69 +0.8 1,366 - EX31_RS15255 0.69 +0.7 1,411 + EX31_RS15255 0.79 +1.3 1,411 + EX31_RS15255 0.79 -1.5 1,412 - EX31_RS15255 0.79 +0.6 1,466 + +1.1 1,466 + -0.7 1,466 + +0.1 1,466 + -0.4 1,466 + +0.3 1,467 - -0.9 1,467 - -0.3 1,467 - +0.3 1,467 - -0.0 1,467 - -0.0 1,467 - +2.0 1,467 - +0.4 1,467 - +0.3 1,467 - +0.2 1,488 + +1.3 1,488 + -0.7 1,488 + +0.2 1,488 + -1.3 1,489 - +2.3 1,489 - +0.3 1,489 - -1.9 1,489 - +0.1 1,489 - +0.9 1,489 - -0.8 1,527 - -0.4 1,572 - -0.4 1,578 + +0.4 1,578 + -0.3 1,578 + +0.2 1,578 + +0.1 1,579 - +0.3 1,579 - -0.4 1,579 - +0.3 1,600 - +0.2 1,600 - -0.3 1,608 + +2.6 1,608 + -0.1 1,608 + -2.4 1,609 - +0.5 1,609 - +0.2 1,609 - -0.8 1,615 - +1.1 1,615 - +0.2 1,615 - +0.4 1,707 + +1.4 1,707 + -1.8 1,708 - -0.6 1,708 - -1.4 1,708 - -0.1 1,713 + -1.0 1,714 - +0.1 1,714 - +1.3 1,714 - +0.7 1,717 + +0.8 1,718 - -0.5 1,718 - -0.9 1,718 - +0.0 1,718 - -0.3 1,723 - +1.4 1,729 + +0.7 1,729 + -0.3 1,730 - -0.6 1,730 - -0.6 1,730 - +0.4 1,758 + +0.8 1,759 - -0.5 1,759 - +0.7 1,761 - -0.5 1,761 - -3.1 1,761 - -3.7 1,822 - -1.0 1,822 - -3.6 1,845 + -0.5 1,845 + +0.9 1,845 + +0.3 1,846 - +0.3 1,846 - +0.1 1,853 + +0.1 1,853 + +0.5 1,853 + +1.1 1,854 - +0.4 1,854 - -0.7 1,854 - -1.3 1,854 - +0.2 1,854 - -0.2 1,858 + +0.3 1,858 + +0.2 1,899 - -2.7 1,899 - -0.9 1,899 - -0.1 1,908 + +0.7 1,908 + +0.5 1,930 + -0.6 1,931 - -0.5 1,931 - -0.9 1,931 - +0.3 2,152 + EX31_RS15260 0.26 -0.2 2,152 + EX31_RS15260 0.26 -1.7 2,153 - EX31_RS15260 0.26 -2.0 2,153 - EX31_RS15260 0.26 -1.0 2,153 - EX31_RS15260 0.26 +1.2 2,153 - EX31_RS15260 0.26 -0.8 2,153 - EX31_RS15260 0.26 -0.6 2,315 + -0.6 2,316 - +1.0 2,316 - +0.6 2,344 + +1.4 2,344 + +0.2 2,344 + -0.2 2,344 + -1.0 2,345 - -0.9 2,357 + +0.5 2,358 - +0.7 2,529 + +0.7 2,530 - +0.6 2,596 + -2.1 2,596 + +0.2 2,596 + +0.8 2,597 - +0.2 2,597 - +0.2 2,597 - -1.3 2,597 - -0.6 2,597 - -0.1 2,624 + +0.6 2,625 - -0.1 2,625 - +0.5 2,704 + EX31_RS15265 0.35 -0.2 2,704 + EX31_RS15265 0.35 +1.3 2,705 - EX31_RS15265 0.35 +0.2 2,734 + EX31_RS15265 0.47 -0.1 2,734 + EX31_RS15265 0.47 +1.1 2,734 + EX31_RS15265 0.47 +0.4 2,735 - EX31_RS15265 0.48 -2.4 2,735 - EX31_RS15265 0.48 +0.6 2,735 - EX31_RS15265 0.48 -0.3 2,735 - EX31_RS15265 0.48 +0.0 2,839 + -1.1 2,840 - -1.0 2,840 - +0.2 2,840 - +0.5 2,840 - -1.2 2,840 - -1.0 2,923 + +1.2 3,062 - EX31_RS24975 0.27 -0.3 3,062 - EX31_RS24975 0.27 +0.2 3,062 - EX31_RS24975 0.27 +0.1 3,064 + EX31_RS24975 0.27 -0.3 3,116 + EX31_RS24975 0.36 -0.7 3,117 - EX31_RS24975 0.36 -0.9 3,117 - EX31_RS24975 0.36 -0.1 3,117 - EX31_RS24975 0.36 -0.1 3,140 + EX31_RS24975 0.40 -0.8 3,141 - EX31_RS24975 0.40 +0.1 3,141 - EX31_RS24975 0.40 +1.4 3,141 - EX31_RS24975 0.40 -0.2 3,141 - EX31_RS24975 0.40 +0.4 3,141 - EX31_RS24975 0.40 +0.5 3,141 - EX31_RS24975 0.40 +0.7 3,141 - EX31_RS24975 0.40 +0.5 3,142 + EX31_RS24975 0.41 +0.9 3,142 + EX31_RS24975 0.41 +0.5 3,142 + EX31_RS24975 0.41 -0.3 3,143 - EX31_RS24975 0.41 +0.2 3,143 - EX31_RS24975 0.41 -0.8 3,143 - EX31_RS24975 0.41 -0.2 3,143 - EX31_RS24975 0.41 -1.6 3,143 - EX31_RS24975 0.41 -1.3 3,143 - EX31_RS24975 0.41 -1.7 3,143 - EX31_RS24975 0.41 +0.1 3,143 - EX31_RS24975 0.41 +0.1 3,143 - EX31_RS24975 0.41 +0.7 3,143 - EX31_RS24975 0.41 -0.5 3,210 + EX31_RS24975 0.52 +0.5 3,257 + EX31_RS24975 0.60 -1.2 3,273 + EX31_RS24975 0.63 +0.3 3,273 + EX31_RS24975 0.63 -0.3 3,273 + EX31_RS24975 0.63 -0.9 3,273 + EX31_RS24975 0.63 -3.3 3,274 - EX31_RS24975 0.63 -0.0 3,274 - EX31_RS24975 0.63 -0.9 3,309 + EX31_RS24975 0.69 +1.2
Or see this region's nucleotide sequence