Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS15085 and EX31_RS15090 overlap by 4 nucleotides EX31_RS15090 and EX31_RS15095 overlap by 4 nucleotides
EX31_RS15085: EX31_RS15085 - lipid III flippase WzxE, at 33,658 to 34,908
_RS15085
EX31_RS15090: EX31_RS15090 - TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase, at 34,905 to 35,987
_RS15090
EX31_RS15095: EX31_RS15095 - O-antigen assembly polymerase, at 35,984 to 37,363
_RS15095
Position (kb) 34
35
36 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 34.048 kb on + strand, within EX31_RS15085 at 34.113 kb on - strand, within EX31_RS15085 at 34.217 kb on + strand, within EX31_RS15085 at 34.217 kb on + strand, within EX31_RS15085 at 34.218 kb on - strand, within EX31_RS15085 at 34.267 kb on + strand, within EX31_RS15085 at 34.271 kb on + strand, within EX31_RS15085 at 34.361 kb on - strand, within EX31_RS15085 at 34.448 kb on - strand, within EX31_RS15085 at 34.480 kb on + strand, within EX31_RS15085 at 34.488 kb on - strand, within EX31_RS15085 at 34.683 kb on - strand, within EX31_RS15085 at 34.700 kb on - strand, within EX31_RS15085 at 34.745 kb on - strand, within EX31_RS15085 at 34.837 kb on + strand at 34.837 kb on + strand at 34.837 kb on + strand at 34.837 kb on + strand at 34.838 kb on - strand at 34.838 kb on - strand at 34.838 kb on - strand at 34.838 kb on - strand at 34.838 kb on - strand at 34.839 kb on + strand at 34.849 kb on + strand at 34.849 kb on + strand at 34.850 kb on - strand at 34.850 kb on - strand at 34.850 kb on - strand at 34.850 kb on - strand at 34.880 kb on + strand at 34.880 kb on + strand at 34.880 kb on + strand at 34.880 kb on + strand at 34.880 kb on + strand at 34.880 kb on + strand at 34.880 kb on + strand at 34.881 kb on - strand at 34.887 kb on + strand at 34.887 kb on + strand at 34.888 kb on - strand at 34.891 kb on + strand at 34.891 kb on + strand at 34.892 kb on - strand at 34.892 kb on - strand at 34.896 kb on + strand at 34.949 kb on + strand at 34.949 kb on + strand at 34.950 kb on - strand at 34.950 kb on - strand at 34.950 kb on - strand at 34.950 kb on - strand at 35.013 kb on + strand at 35.013 kb on + strand at 35.014 kb on - strand, within EX31_RS15090 at 35.014 kb on - strand, within EX31_RS15090 at 35.014 kb on - strand, within EX31_RS15090 at 35.021 kb on + strand, within EX31_RS15090 at 35.072 kb on + strand, within EX31_RS15090 at 35.204 kb on + strand, within EX31_RS15090 at 35.205 kb on - strand, within EX31_RS15090 at 35.205 kb on - strand, within EX31_RS15090 at 35.247 kb on + strand, within EX31_RS15090 at 35.284 kb on - strand, within EX31_RS15090 at 35.284 kb on - strand, within EX31_RS15090 at 35.312 kb on + strand, within EX31_RS15090 at 35.313 kb on - strand, within EX31_RS15090 at 35.313 kb on - strand, within EX31_RS15090 at 35.374 kb on + strand, within EX31_RS15090 at 35.387 kb on - strand, within EX31_RS15090 at 35.501 kb on + strand, within EX31_RS15090 at 35.501 kb on + strand, within EX31_RS15090 at 35.501 kb on + strand, within EX31_RS15090 at 35.501 kb on + strand, within EX31_RS15090 at 35.501 kb on + strand, within EX31_RS15090 at 35.501 kb on + strand, within EX31_RS15090 at 35.501 kb on + strand, within EX31_RS15090 at 35.502 kb on - strand, within EX31_RS15090 at 35.502 kb on - strand, within EX31_RS15090 at 35.502 kb on - strand, within EX31_RS15090 at 35.502 kb on - strand, within EX31_RS15090 at 35.502 kb on - strand, within EX31_RS15090 at 35.589 kb on + strand, within EX31_RS15090 at 35.589 kb on + strand, within EX31_RS15090 at 35.589 kb on + strand, within EX31_RS15090 at 35.589 kb on + strand, within EX31_RS15090 at 35.589 kb on + strand, within EX31_RS15090 at 35.589 kb on + strand, within EX31_RS15090 at 35.589 kb on + strand, within EX31_RS15090 at 35.589 kb on + strand, within EX31_RS15090 at 35.589 kb on + strand, within EX31_RS15090 at 35.589 kb on + strand, within EX31_RS15090 at 35.589 kb on + strand, within EX31_RS15090 at 35.589 kb on + strand, within EX31_RS15090 at 35.590 kb on - strand, within EX31_RS15090 at 35.590 kb on - strand, within EX31_RS15090 at 35.590 kb on - strand, within EX31_RS15090 at 35.590 kb on - strand, within EX31_RS15090 at 35.590 kb on - strand, within EX31_RS15090 at 35.590 kb on - strand, within EX31_RS15090 at 35.590 kb on - strand, within EX31_RS15090 at 35.590 kb on - strand, within EX31_RS15090 at 35.676 kb on + strand, within EX31_RS15090 at 35.677 kb on - strand, within EX31_RS15090 at 35.677 kb on - strand, within EX31_RS15090 at 35.710 kb on - strand, within EX31_RS15090 at 35.715 kb on - strand, within EX31_RS15090 at 35.715 kb on - strand, within EX31_RS15090 at 35.841 kb on + strand, within EX31_RS15090 at 35.841 kb on + strand, within EX31_RS15090 at 35.842 kb on - strand, within EX31_RS15090 at 35.842 kb on - strand, within EX31_RS15090 at 35.842 kb on - strand, within EX31_RS15090 at 35.842 kb on - strand, within EX31_RS15090 at 35.842 kb on - strand, within EX31_RS15090 at 35.934 kb on + strand at 35.934 kb on + strand at 35.935 kb on - strand at 35.959 kb on + strand at 35.959 kb on + strand at 36.111 kb on - strand at 36.111 kb on - strand at 36.236 kb on + strand, within EX31_RS15095 at 36.237 kb on - strand, within EX31_RS15095 at 36.377 kb on - strand, within EX31_RS15095 at 36.716 kb on - strand, within EX31_RS15095
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 34,048 + EX31_RS15085 0.31 +0.4 34,113 - EX31_RS15085 0.36 -0.3 34,217 + EX31_RS15085 0.45 +0.7 34,217 + EX31_RS15085 0.45 -0.1 34,218 - EX31_RS15085 0.45 -2.1 34,267 + EX31_RS15085 0.49 +0.0 34,271 + EX31_RS15085 0.49 +0.3 34,361 - EX31_RS15085 0.56 +1.6 34,448 - EX31_RS15085 0.63 +1.3 34,480 + EX31_RS15085 0.66 +0.0 34,488 - EX31_RS15085 0.66 -0.3 34,683 - EX31_RS15085 0.82 -1.1 34,700 - EX31_RS15085 0.83 +0.7 34,745 - EX31_RS15085 0.87 -0.4 34,837 + -2.6 34,837 + +0.3 34,837 + +0.8 34,837 + -0.2 34,838 - +0.4 34,838 - +0.5 34,838 - -0.1 34,838 - +1.9 34,838 - +1.1 34,839 + +1.8 34,849 + +1.7 34,849 + -1.1 34,850 - -3.0 34,850 - +0.3 34,850 - +1.6 34,850 - +0.0 34,880 + -0.6 34,880 + -0.1 34,880 + +0.3 34,880 + +0.8 34,880 + -1.5 34,880 + -1.5 34,880 + +0.1 34,881 - +1.6 34,887 + +0.2 34,887 + -1.0 34,888 - +0.7 34,891 + +0.3 34,891 + -0.2 34,892 - +1.1 34,892 - -0.1 34,896 + +0.3 34,949 + -0.0 34,949 + +0.5 34,950 - -0.9 34,950 - -0.6 34,950 - +0.3 34,950 - -3.9 35,013 + +0.6 35,013 + +0.8 35,014 - EX31_RS15090 0.10 +0.4 35,014 - EX31_RS15090 0.10 -1.9 35,014 - EX31_RS15090 0.10 +1.1 35,021 + EX31_RS15090 0.11 +0.7 35,072 + EX31_RS15090 0.15 -0.7 35,204 + EX31_RS15090 0.28 -0.1 35,205 - EX31_RS15090 0.28 +0.9 35,205 - EX31_RS15090 0.28 -3.1 35,247 + EX31_RS15090 0.32 +0.2 35,284 - EX31_RS15090 0.35 +0.6 35,284 - EX31_RS15090 0.35 +0.7 35,312 + EX31_RS15090 0.38 -0.1 35,313 - EX31_RS15090 0.38 +0.6 35,313 - EX31_RS15090 0.38 -0.2 35,374 + EX31_RS15090 0.43 +1.5 35,387 - EX31_RS15090 0.45 -1.8 35,501 + EX31_RS15090 0.55 +0.2 35,501 + EX31_RS15090 0.55 +0.5 35,501 + EX31_RS15090 0.55 +1.4 35,501 + EX31_RS15090 0.55 +0.9 35,501 + EX31_RS15090 0.55 -0.5 35,501 + EX31_RS15090 0.55 +0.1 35,501 + EX31_RS15090 0.55 +0.6 35,502 - EX31_RS15090 0.55 +0.3 35,502 - EX31_RS15090 0.55 +1.3 35,502 - EX31_RS15090 0.55 +0.6 35,502 - EX31_RS15090 0.55 +0.7 35,502 - EX31_RS15090 0.55 -0.3 35,589 + EX31_RS15090 0.63 -1.7 35,589 + EX31_RS15090 0.63 +0.7 35,589 + EX31_RS15090 0.63 +0.5 35,589 + EX31_RS15090 0.63 -0.2 35,589 + EX31_RS15090 0.63 +0.7 35,589 + EX31_RS15090 0.63 +0.9 35,589 + EX31_RS15090 0.63 +1.0 35,589 + EX31_RS15090 0.63 -0.3 35,589 + EX31_RS15090 0.63 +1.3 35,589 + EX31_RS15090 0.63 +0.1 35,589 + EX31_RS15090 0.63 +0.9 35,589 + EX31_RS15090 0.63 -1.0 35,590 - EX31_RS15090 0.63 +1.6 35,590 - EX31_RS15090 0.63 -1.0 35,590 - EX31_RS15090 0.63 +0.3 35,590 - EX31_RS15090 0.63 +0.8 35,590 - EX31_RS15090 0.63 +0.2 35,590 - EX31_RS15090 0.63 -1.3 35,590 - EX31_RS15090 0.63 +0.6 35,590 - EX31_RS15090 0.63 -0.9 35,676 + EX31_RS15090 0.71 -0.7 35,677 - EX31_RS15090 0.71 -0.3 35,677 - EX31_RS15090 0.71 +1.2 35,710 - EX31_RS15090 0.74 +0.7 35,715 - EX31_RS15090 0.75 +0.8 35,715 - EX31_RS15090 0.75 +0.8 35,841 + EX31_RS15090 0.86 +0.0 35,841 + EX31_RS15090 0.86 +0.7 35,842 - EX31_RS15090 0.87 +1.1 35,842 - EX31_RS15090 0.87 +0.1 35,842 - EX31_RS15090 0.87 -1.0 35,842 - EX31_RS15090 0.87 -0.3 35,842 - EX31_RS15090 0.87 +0.6 35,934 + +1.7 35,934 + +0.4 35,935 - -0.2 35,959 + -0.2 35,959 + +0.5 36,111 - +0.3 36,111 - -1.2 36,236 + EX31_RS15095 0.18 +2.1 36,237 - EX31_RS15095 0.18 -0.6 36,377 - EX31_RS15095 0.28 +0.0 36,716 - EX31_RS15095 0.53 -0.2
Or see this region's nucleotide sequence