Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS14090 and EX31_RS14095 are separated by 105 nucleotides EX31_RS14095 and EX31_RS14100 are separated by 193 nucleotides EX31_RS14100 and EX31_RS14105 are separated by 308 nucleotides
EX31_RS14090: EX31_RS14090 - fructosamine kinase family protein, at 82,651 to 83,520
_RS14090
EX31_RS14095: EX31_RS14095 - yfeABCD regulator yfeE, at 83,626 to 84,174
_RS14095
EX31_RS14100: EX31_RS14100 - hexitol phosphatase HxpB, at 84,368 to 85,033
_RS14100
EX31_RS14105: EX31_RS14105 - 5-dehydro-4-deoxy-D-glucuronate isomerase, at 85,342 to 86,178
_RS14105
Position (kb) 84
85
86 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 83.373 kb on + strand, within EX31_RS14090 at 83.373 kb on + strand, within EX31_RS14090 at 83.375 kb on + strand, within EX31_RS14090 at 83.417 kb on - strand, within EX31_RS14090 at 83.417 kb on - strand, within EX31_RS14090 at 83.417 kb on - strand, within EX31_RS14090 at 83.423 kb on + strand, within EX31_RS14090 at 83.423 kb on + strand, within EX31_RS14090 at 83.423 kb on + strand, within EX31_RS14090 at 83.423 kb on + strand, within EX31_RS14090 at 83.423 kb on + strand, within EX31_RS14090 at 83.424 kb on - strand, within EX31_RS14090 at 83.424 kb on - strand, within EX31_RS14090 at 83.424 kb on - strand, within EX31_RS14090 at 83.424 kb on - strand, within EX31_RS14090 at 83.425 kb on + strand, within EX31_RS14090 at 83.425 kb on + strand, within EX31_RS14090 at 83.425 kb on + strand, within EX31_RS14090 at 83.425 kb on + strand, within EX31_RS14090 at 83.426 kb on - strand, within EX31_RS14090 at 83.428 kb on + strand, within EX31_RS14090 at 83.428 kb on + strand, within EX31_RS14090 at 83.429 kb on - strand, within EX31_RS14090 at 83.450 kb on + strand at 83.502 kb on - strand at 83.502 kb on - strand at 83.511 kb on + strand at 83.512 kb on - strand at 83.549 kb on + strand at 83.568 kb on + strand at 83.569 kb on - strand at 83.611 kb on + strand at 83.612 kb on - strand at 83.612 kb on - strand at 83.612 kb on - strand at 83.612 kb on - strand at 83.679 kb on + strand at 83.694 kb on - strand, within EX31_RS14095 at 83.705 kb on + strand, within EX31_RS14095 at 83.797 kb on - strand, within EX31_RS14095 at 83.891 kb on + strand, within EX31_RS14095 at 83.891 kb on + strand, within EX31_RS14095 at 83.891 kb on + strand, within EX31_RS14095 at 83.891 kb on + strand, within EX31_RS14095 at 83.892 kb on - strand, within EX31_RS14095 at 83.892 kb on - strand, within EX31_RS14095 at 83.892 kb on - strand, within EX31_RS14095 at 83.895 kb on + strand, within EX31_RS14095 at 83.896 kb on - strand, within EX31_RS14095 at 83.957 kb on + strand, within EX31_RS14095 at 83.957 kb on + strand, within EX31_RS14095 at 83.958 kb on - strand, within EX31_RS14095 at 84.054 kb on + strand, within EX31_RS14095 at 84.167 kb on + strand at 84.167 kb on + strand at 84.168 kb on - strand at 84.168 kb on - strand at 84.189 kb on - strand at 84.197 kb on + strand at 84.198 kb on - strand at 84.329 kb on + strand at 84.342 kb on + strand at 84.342 kb on + strand at 84.343 kb on - strand at 84.346 kb on + strand at 84.346 kb on + strand at 84.346 kb on + strand at 84.346 kb on + strand at 84.347 kb on - strand at 84.374 kb on + strand at 84.375 kb on - strand at 84.375 kb on - strand at 84.388 kb on + strand at 84.421 kb on - strand at 84.485 kb on - strand, within EX31_RS14100 at 84.512 kb on - strand, within EX31_RS14100 at 84.551 kb on + strand, within EX31_RS14100 at 84.727 kb on + strand, within EX31_RS14100 at 84.728 kb on - strand, within EX31_RS14100 at 84.759 kb on + strand, within EX31_RS14100 at 84.760 kb on - strand, within EX31_RS14100 at 84.772 kb on + strand, within EX31_RS14100 at 84.827 kb on + strand, within EX31_RS14100 at 84.827 kb on + strand, within EX31_RS14100 at 84.828 kb on - strand, within EX31_RS14100 at 84.849 kb on + strand, within EX31_RS14100 at 84.849 kb on + strand, within EX31_RS14100 at 84.850 kb on - strand, within EX31_RS14100 at 84.953 kb on + strand, within EX31_RS14100 at 84.953 kb on + strand, within EX31_RS14100 at 84.953 kb on + strand, within EX31_RS14100 at 84.953 kb on + strand, within EX31_RS14100 at 84.953 kb on + strand, within EX31_RS14100 at 84.953 kb on + strand, within EX31_RS14100 at 84.954 kb on - strand, within EX31_RS14100 at 84.954 kb on - strand, within EX31_RS14100 at 84.954 kb on - strand, within EX31_RS14100 at 85.091 kb on + strand at 85.091 kb on + strand at 85.092 kb on - strand at 85.093 kb on + strand at 85.094 kb on - strand at 85.094 kb on - strand at 85.220 kb on - strand at 85.264 kb on + strand at 85.264 kb on + strand at 85.264 kb on + strand at 85.294 kb on + strand at 85.295 kb on - strand at 85.359 kb on + strand at 85.444 kb on + strand, within EX31_RS14105 at 85.444 kb on + strand, within EX31_RS14105 at 85.445 kb on - strand, within EX31_RS14105 at 85.445 kb on - strand, within EX31_RS14105 at 85.445 kb on - strand, within EX31_RS14105 at 85.445 kb on - strand, within EX31_RS14105 at 85.447 kb on - strand, within EX31_RS14105 at 85.447 kb on - strand, within EX31_RS14105 at 85.456 kb on + strand, within EX31_RS14105 at 85.456 kb on + strand, within EX31_RS14105 at 85.456 kb on + strand, within EX31_RS14105 at 85.456 kb on + strand, within EX31_RS14105 at 85.456 kb on + strand, within EX31_RS14105 at 85.457 kb on - strand, within EX31_RS14105 at 85.621 kb on - strand, within EX31_RS14105 at 85.627 kb on + strand, within EX31_RS14105 at 85.628 kb on - strand, within EX31_RS14105 at 85.654 kb on + strand, within EX31_RS14105 at 85.654 kb on + strand, within EX31_RS14105 at 85.654 kb on + strand, within EX31_RS14105 at 85.655 kb on - strand, within EX31_RS14105 at 85.655 kb on - strand, within EX31_RS14105 at 85.655 kb on - strand, within EX31_RS14105 at 85.723 kb on + strand, within EX31_RS14105 at 85.723 kb on + strand, within EX31_RS14105 at 85.723 kb on + strand, within EX31_RS14105 at 85.723 kb on + strand, within EX31_RS14105 at 85.724 kb on - strand, within EX31_RS14105 at 85.724 kb on - strand, within EX31_RS14105 at 85.833 kb on + strand, within EX31_RS14105 at 85.914 kb on + strand, within EX31_RS14105 at 85.914 kb on + strand, within EX31_RS14105 at 85.915 kb on - strand, within EX31_RS14105 at 85.954 kb on + strand, within EX31_RS14105 at 85.968 kb on + strand, within EX31_RS14105 at 85.968 kb on + strand, within EX31_RS14105 at 85.968 kb on + strand, within EX31_RS14105
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 83,373 + EX31_RS14090 0.83 +0.2 83,373 + EX31_RS14090 0.83 -1.0 83,375 + EX31_RS14090 0.83 +1.5 83,417 - EX31_RS14090 0.88 +0.4 83,417 - EX31_RS14090 0.88 -0.6 83,417 - EX31_RS14090 0.88 +0.4 83,423 + EX31_RS14090 0.89 -0.8 83,423 + EX31_RS14090 0.89 -0.3 83,423 + EX31_RS14090 0.89 -0.4 83,423 + EX31_RS14090 0.89 -0.1 83,423 + EX31_RS14090 0.89 +1.4 83,424 - EX31_RS14090 0.89 -0.7 83,424 - EX31_RS14090 0.89 -2.4 83,424 - EX31_RS14090 0.89 +0.6 83,424 - EX31_RS14090 0.89 -1.5 83,425 + EX31_RS14090 0.89 +0.8 83,425 + EX31_RS14090 0.89 -1.4 83,425 + EX31_RS14090 0.89 -3.0 83,425 + EX31_RS14090 0.89 -2.2 83,426 - EX31_RS14090 0.89 -0.2 83,428 + EX31_RS14090 0.89 -3.1 83,428 + EX31_RS14090 0.89 +0.2 83,429 - EX31_RS14090 0.89 -1.0 83,450 + +1.3 83,502 - -0.1 83,502 - -1.1 83,511 + -0.4 83,512 - -0.9 83,549 + +1.8 83,568 + +0.2 83,569 - +0.5 83,611 + -2.0 83,612 - +1.2 83,612 - +1.3 83,612 - -2.9 83,612 - +1.6 83,679 + +1.0 83,694 - EX31_RS14095 0.12 -1.1 83,705 + EX31_RS14095 0.14 -1.3 83,797 - EX31_RS14095 0.31 -1.1 83,891 + EX31_RS14095 0.48 +0.2 83,891 + EX31_RS14095 0.48 -1.5 83,891 + EX31_RS14095 0.48 -0.2 83,891 + EX31_RS14095 0.48 -0.3 83,892 - EX31_RS14095 0.48 -0.6 83,892 - EX31_RS14095 0.48 -0.6 83,892 - EX31_RS14095 0.48 +0.4 83,895 + EX31_RS14095 0.49 -0.2 83,896 - EX31_RS14095 0.49 -0.2 83,957 + EX31_RS14095 0.60 +1.1 83,957 + EX31_RS14095 0.60 -1.2 83,958 - EX31_RS14095 0.60 -0.4 84,054 + EX31_RS14095 0.78 +0.8 84,167 + -0.1 84,167 + +0.2 84,168 - +0.5 84,168 - +0.7 84,189 - -0.2 84,197 + -0.6 84,198 - +0.3 84,329 + -0.2 84,342 + +0.4 84,342 + -0.8 84,343 - +1.0 84,346 + -0.4 84,346 + +0.4 84,346 + +1.4 84,346 + -2.5 84,347 - +1.2 84,374 + -0.6 84,375 - -0.6 84,375 - -0.5 84,388 + +0.5 84,421 - -0.7 84,485 - EX31_RS14100 0.18 -0.6 84,512 - EX31_RS14100 0.22 -1.5 84,551 + EX31_RS14100 0.27 +0.6 84,727 + EX31_RS14100 0.54 -0.8 84,728 - EX31_RS14100 0.54 -1.7 84,759 + EX31_RS14100 0.59 +1.1 84,760 - EX31_RS14100 0.59 -0.1 84,772 + EX31_RS14100 0.61 -1.1 84,827 + EX31_RS14100 0.69 -1.1 84,827 + EX31_RS14100 0.69 -0.8 84,828 - EX31_RS14100 0.69 +0.6 84,849 + EX31_RS14100 0.72 -1.2 84,849 + EX31_RS14100 0.72 +0.6 84,850 - EX31_RS14100 0.72 -0.3 84,953 + EX31_RS14100 0.88 -0.8 84,953 + EX31_RS14100 0.88 -3.6 84,953 + EX31_RS14100 0.88 +0.1 84,953 + EX31_RS14100 0.88 -0.9 84,953 + EX31_RS14100 0.88 +0.2 84,953 + EX31_RS14100 0.88 -1.9 84,954 - EX31_RS14100 0.88 -0.8 84,954 - EX31_RS14100 0.88 -0.2 84,954 - EX31_RS14100 0.88 -0.4 85,091 + -2.4 85,091 + +1.5 85,092 - -1.0 85,093 + -2.0 85,094 - -0.8 85,094 - +0.1 85,220 - +0.1 85,264 + -0.2 85,264 + -0.8 85,264 + +0.2 85,294 + -1.3 85,295 - +0.7 85,359 + -0.3 85,444 + EX31_RS14105 0.12 -1.5 85,444 + EX31_RS14105 0.12 +0.5 85,445 - EX31_RS14105 0.12 -0.0 85,445 - EX31_RS14105 0.12 +0.1 85,445 - EX31_RS14105 0.12 +0.3 85,445 - EX31_RS14105 0.12 -2.3 85,447 - EX31_RS14105 0.13 +0.8 85,447 - EX31_RS14105 0.13 -1.5 85,456 + EX31_RS14105 0.14 +0.4 85,456 + EX31_RS14105 0.14 -2.4 85,456 + EX31_RS14105 0.14 +0.8 85,456 + EX31_RS14105 0.14 -2.3 85,456 + EX31_RS14105 0.14 -0.9 85,457 - EX31_RS14105 0.14 -0.8 85,621 - EX31_RS14105 0.33 -0.9 85,627 + EX31_RS14105 0.34 -0.6 85,628 - EX31_RS14105 0.34 -1.4 85,654 + EX31_RS14105 0.37 +0.3 85,654 + EX31_RS14105 0.37 -1.0 85,654 + EX31_RS14105 0.37 -1.2 85,655 - EX31_RS14105 0.37 -0.7 85,655 - EX31_RS14105 0.37 +0.7 85,655 - EX31_RS14105 0.37 +1.3 85,723 + EX31_RS14105 0.46 +0.0 85,723 + EX31_RS14105 0.46 +0.3 85,723 + EX31_RS14105 0.46 -1.1 85,723 + EX31_RS14105 0.46 +0.3 85,724 - EX31_RS14105 0.46 +0.7 85,724 - EX31_RS14105 0.46 +0.2 85,833 + EX31_RS14105 0.59 -0.8 85,914 + EX31_RS14105 0.68 +0.7 85,914 + EX31_RS14105 0.68 -1.5 85,915 - EX31_RS14105 0.68 -0.1 85,954 + EX31_RS14105 0.73 +0.2 85,968 + EX31_RS14105 0.75 -1.5 85,968 + EX31_RS14105 0.75 +0.6 85,968 + EX31_RS14105 0.75 -1.0
Or see this region's nucleotide sequence