Strain Fitness in Rahnella sp. WP5 around EX31_RS13940

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS13935 and EX31_RS13940 are separated by 508 nucleotidesEX31_RS13940 and EX31_RS13945 are separated by 129 nucleotides EX31_RS13935: EX31_RS13935 - phosphoenolpyruvate synthase, at 48,472 to 50,847 _RS13935 EX31_RS13940: EX31_RS13940 - kinase/pyrophosphorylase, at 51,356 to 52,177 _RS13940 EX31_RS13945: EX31_RS13945 - 3-deoxy-7-phosphoheptulonate synthase, at 52,307 to 53,353 _RS13945 Position (kb) 51 52 53Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 50.377 kb on + strand, within EX31_RS13935at 50.377 kb on + strand, within EX31_RS13935at 50.378 kb on - strand, within EX31_RS13935at 50.378 kb on - strand, within EX31_RS13935at 50.378 kb on - strand, within EX31_RS13935at 50.511 kb on - strand, within EX31_RS13935at 50.575 kb on + strand, within EX31_RS13935at 50.575 kb on + strand, within EX31_RS13935at 50.576 kb on - strand, within EX31_RS13935at 50.576 kb on - strand, within EX31_RS13935at 50.576 kb on - strand, within EX31_RS13935at 50.594 kb on - strand, within EX31_RS13935at 50.594 kb on - strand, within EX31_RS13935at 50.594 kb on - strand, within EX31_RS13935at 50.594 kb on - strand, within EX31_RS13935at 50.594 kb on - strand, within EX31_RS13935at 50.622 kb on + strandat 50.640 kb on + strandat 50.778 kb on + strandat 50.794 kb on - strandat 50.807 kb on + strandat 50.815 kb on - strandat 50.824 kb on + strandat 50.824 kb on + strandat 50.863 kb on + strandat 50.867 kb on + strandat 50.868 kb on - strandat 50.872 kb on - strandat 50.872 kb on - strandat 50.872 kb on - strandat 50.877 kb on - strandat 50.907 kb on + strandat 50.939 kb on + strandat 50.940 kb on - strandat 51.118 kb on - strandat 51.128 kb on + strandat 51.211 kb on - strandat 51.270 kb on - strandat 51.300 kb on + strandat 51.303 kb on + strandat 51.303 kb on + strandat 51.304 kb on - strandat 51.307 kb on + strandat 51.308 kb on - strandat 51.308 kb on - strandat 51.308 kb on - strandat 51.326 kb on - strandat 51.554 kb on + strand, within EX31_RS13940at 51.715 kb on + strand, within EX31_RS13940at 51.715 kb on + strand, within EX31_RS13940at 51.715 kb on + strand, within EX31_RS13940at 51.719 kb on + strand, within EX31_RS13940at 51.720 kb on - strand, within EX31_RS13940at 51.720 kb on - strand, within EX31_RS13940at 51.858 kb on + strand, within EX31_RS13940at 51.859 kb on - strand, within EX31_RS13940at 51.859 kb on - strand, within EX31_RS13940at 51.884 kb on + strand, within EX31_RS13940at 51.949 kb on + strand, within EX31_RS13940at 51.949 kb on + strand, within EX31_RS13940at 51.950 kb on - strand, within EX31_RS13940at 51.950 kb on - strand, within EX31_RS13940at 51.954 kb on + strand, within EX31_RS13940at 51.954 kb on + strand, within EX31_RS13940at 51.955 kb on - strand, within EX31_RS13940at 51.955 kb on - strand, within EX31_RS13940at 52.022 kb on + strand, within EX31_RS13940at 52.185 kb on + strandat 52.193 kb on + strandat 52.193 kb on + strandat 52.193 kb on + strandat 52.193 kb on + strandat 52.193 kb on + strandat 52.193 kb on + strandat 52.193 kb on + strandat 52.194 kb on - strandat 52.194 kb on - strandat 52.202 kb on + strandat 52.354 kb on + strandat 52.354 kb on + strandat 52.423 kb on + strand, within EX31_RS13945at 52.424 kb on - strand, within EX31_RS13945at 52.500 kb on + strand, within EX31_RS13945at 52.500 kb on + strand, within EX31_RS13945at 52.500 kb on + strand, within EX31_RS13945at 52.500 kb on + strand, within EX31_RS13945at 52.501 kb on - strand, within EX31_RS13945at 52.501 kb on - strand, within EX31_RS13945at 52.579 kb on + strand, within EX31_RS13945at 52.579 kb on + strand, within EX31_RS13945at 52.580 kb on - strand, within EX31_RS13945at 52.580 kb on - strand, within EX31_RS13945at 52.580 kb on - strand, within EX31_RS13945at 52.583 kb on + strand, within EX31_RS13945at 52.583 kb on + strand, within EX31_RS13945at 52.583 kb on + strand, within EX31_RS13945at 52.583 kb on + strand, within EX31_RS13945at 52.583 kb on + strand, within EX31_RS13945at 52.600 kb on + strand, within EX31_RS13945at 52.600 kb on + strand, within EX31_RS13945at 52.600 kb on + strand, within EX31_RS13945at 52.669 kb on + strand, within EX31_RS13945at 52.684 kb on + strand, within EX31_RS13945at 52.684 kb on + strand, within EX31_RS13945at 52.685 kb on - strand, within EX31_RS13945at 52.685 kb on - strand, within EX31_RS13945at 52.689 kb on + strand, within EX31_RS13945at 52.689 kb on + strand, within EX31_RS13945at 52.689 kb on + strand, within EX31_RS13945at 52.693 kb on - strand, within EX31_RS13945at 52.710 kb on + strand, within EX31_RS13945at 52.710 kb on + strand, within EX31_RS13945at 52.757 kb on + strand, within EX31_RS13945at 52.757 kb on + strand, within EX31_RS13945at 52.757 kb on + strand, within EX31_RS13945at 52.757 kb on + strand, within EX31_RS13945at 52.757 kb on + strand, within EX31_RS13945at 52.757 kb on + strand, within EX31_RS13945at 52.758 kb on - strand, within EX31_RS13945at 52.758 kb on - strand, within EX31_RS13945at 52.759 kb on + strand, within EX31_RS13945at 52.759 kb on + strand, within EX31_RS13945at 52.759 kb on + strand, within EX31_RS13945at 52.759 kb on + strand, within EX31_RS13945at 52.759 kb on + strand, within EX31_RS13945at 52.759 kb on + strand, within EX31_RS13945at 52.924 kb on + strand, within EX31_RS13945at 52.924 kb on + strand, within EX31_RS13945at 52.924 kb on + strand, within EX31_RS13945at 52.924 kb on + strand, within EX31_RS13945at 52.924 kb on + strand, within EX31_RS13945at 52.924 kb on + strand, within EX31_RS13945at 52.924 kb on + strand, within EX31_RS13945at 52.925 kb on - strand, within EX31_RS13945at 52.925 kb on - strand, within EX31_RS13945at 52.925 kb on - strand, within EX31_RS13945at 52.925 kb on - strand, within EX31_RS13945at 52.925 kb on - strand, within EX31_RS13945at 52.964 kb on + strand, within EX31_RS13945at 52.965 kb on - strand, within EX31_RS13945at 53.024 kb on + strand, within EX31_RS13945at 53.145 kb on + strand, within EX31_RS13945

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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50,377 + EX31_RS13935 0.80 -0.3
50,377 + EX31_RS13935 0.80 +0.1
50,378 - EX31_RS13935 0.80 -0.1
50,378 - EX31_RS13935 0.80 -0.0
50,378 - EX31_RS13935 0.80 +0.3
50,511 - EX31_RS13935 0.86 -2.5
50,575 + EX31_RS13935 0.89 +0.7
50,575 + EX31_RS13935 0.89 +0.8
50,576 - EX31_RS13935 0.89 +3.1
50,576 - EX31_RS13935 0.89 -0.9
50,576 - EX31_RS13935 0.89 -1.2
50,594 - EX31_RS13935 0.89 -0.0
50,594 - EX31_RS13935 0.89 -0.8
50,594 - EX31_RS13935 0.89 +0.4
50,594 - EX31_RS13935 0.89 -2.6
50,594 - EX31_RS13935 0.89 -0.1
50,622 + +0.3
50,640 + -2.9
50,778 + -1.6
50,794 - -1.2
50,807 + +0.5
50,815 - -1.0
50,824 + -3.6
50,824 + -0.0
50,863 + +1.0
50,867 + -0.3
50,868 - -0.5
50,872 - -1.1
50,872 - +0.3
50,872 - -0.1
50,877 - -0.5
50,907 + -0.4
50,939 + +0.3
50,940 - +0.7
51,118 - +1.4
51,128 + -0.7
51,211 - -0.6
51,270 - +0.2
51,300 + +0.2
51,303 + +0.1
51,303 + +0.1
51,304 - +0.4
51,307 + -0.2
51,308 - +0.0
51,308 - +0.5
51,308 - -0.7
51,326 - +0.8
51,554 + EX31_RS13940 0.24 -1.7
51,715 + EX31_RS13940 0.44 +0.2
51,715 + EX31_RS13940 0.44 +0.6
51,715 + EX31_RS13940 0.44 -0.9
51,719 + EX31_RS13940 0.44 -0.0
51,720 - EX31_RS13940 0.44 -0.2
51,720 - EX31_RS13940 0.44 -1.1
51,858 + EX31_RS13940 0.61 +0.5
51,859 - EX31_RS13940 0.61 -2.6
51,859 - EX31_RS13940 0.61 +0.2
51,884 + EX31_RS13940 0.64 -0.8
51,949 + EX31_RS13940 0.72 -2.8
51,949 + EX31_RS13940 0.72 +0.7
51,950 - EX31_RS13940 0.72 -0.8
51,950 - EX31_RS13940 0.72 -0.9
51,954 + EX31_RS13940 0.73 +0.4
51,954 + EX31_RS13940 0.73 -0.3
51,955 - EX31_RS13940 0.73 +0.8
51,955 - EX31_RS13940 0.73 -1.0
52,022 + EX31_RS13940 0.81 -0.5
52,185 + -1.1
52,193 + -1.6
52,193 + -3.3
52,193 + -1.4
52,193 + +0.6
52,193 + -2.5
52,193 + +0.4
52,193 + -0.8
52,194 - +0.2
52,194 - +1.9
52,202 + -2.1
52,354 + +0.0
52,354 + -0.4
52,423 + EX31_RS13945 0.11 +2.5
52,424 - EX31_RS13945 0.11 -1.6
52,500 + EX31_RS13945 0.18 -0.6
52,500 + EX31_RS13945 0.18 +0.4
52,500 + EX31_RS13945 0.18 +0.7
52,500 + EX31_RS13945 0.18 +1.3
52,501 - EX31_RS13945 0.19 -0.8
52,501 - EX31_RS13945 0.19 +0.8
52,579 + EX31_RS13945 0.26 +0.7
52,579 + EX31_RS13945 0.26 -0.4
52,580 - EX31_RS13945 0.26 +0.6
52,580 - EX31_RS13945 0.26 -2.7
52,580 - EX31_RS13945 0.26 +0.1
52,583 + EX31_RS13945 0.26 +0.6
52,583 + EX31_RS13945 0.26 -0.7
52,583 + EX31_RS13945 0.26 +0.7
52,583 + EX31_RS13945 0.26 -1.2
52,583 + EX31_RS13945 0.26 -0.8
52,600 + EX31_RS13945 0.28 -1.7
52,600 + EX31_RS13945 0.28 -0.2
52,600 + EX31_RS13945 0.28 +0.4
52,669 + EX31_RS13945 0.35 +0.9
52,684 + EX31_RS13945 0.36 +1.1
52,684 + EX31_RS13945 0.36 -0.3
52,685 - EX31_RS13945 0.36 -0.4
52,685 - EX31_RS13945 0.36 +0.0
52,689 + EX31_RS13945 0.36 +0.2
52,689 + EX31_RS13945 0.36 +0.2
52,689 + EX31_RS13945 0.36 -1.1
52,693 - EX31_RS13945 0.37 +0.2
52,710 + EX31_RS13945 0.38 -0.2
52,710 + EX31_RS13945 0.38 -0.0
52,757 + EX31_RS13945 0.43 -0.2
52,757 + EX31_RS13945 0.43 +0.9
52,757 + EX31_RS13945 0.43 -1.6
52,757 + EX31_RS13945 0.43 -1.7
52,757 + EX31_RS13945 0.43 +0.3
52,757 + EX31_RS13945 0.43 -0.8
52,758 - EX31_RS13945 0.43 -0.2
52,758 - EX31_RS13945 0.43 +1.5
52,759 + EX31_RS13945 0.43 +0.6
52,759 + EX31_RS13945 0.43 +0.2
52,759 + EX31_RS13945 0.43 -1.0
52,759 + EX31_RS13945 0.43 +1.7
52,759 + EX31_RS13945 0.43 +0.1
52,759 + EX31_RS13945 0.43 +0.5
52,924 + EX31_RS13945 0.59 -0.5
52,924 + EX31_RS13945 0.59 -2.9
52,924 + EX31_RS13945 0.59 +0.4
52,924 + EX31_RS13945 0.59 -1.6
52,924 + EX31_RS13945 0.59 +0.6
52,924 + EX31_RS13945 0.59 -0.2
52,924 + EX31_RS13945 0.59 +0.9
52,925 - EX31_RS13945 0.59 -1.3
52,925 - EX31_RS13945 0.59 +0.1
52,925 - EX31_RS13945 0.59 +0.0
52,925 - EX31_RS13945 0.59 -1.3
52,925 - EX31_RS13945 0.59 -0.4
52,964 + EX31_RS13945 0.63 -0.5
52,965 - EX31_RS13945 0.63 -0.2
53,024 + EX31_RS13945 0.68 +0.2
53,145 + EX31_RS13945 0.80 -0.0

Or see this region's nucleotide sequence