Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS13790 and EX31_RS13795 are separated by 5 nucleotides EX31_RS13795 and EX31_RS13800 are separated by 129 nucleotides EX31_RS13800 and EX31_RS13805 are separated by 406 nucleotides
EX31_RS13790: EX31_RS13790 - FUSC family protein, at 16,230 to 18,281
_RS13790
EX31_RS13795: EX31_RS13795 - aldo/keto reductase family oxidoreductase, at 18,287 to 19,183
_RS13795
EX31_RS13800: EX31_RS13800 - DUF1289 domain-containing protein, at 19,313 to 19,552
_RS13800
EX31_RS13805: EX31_RS13805 - alkene reductase, at 19,959 to 21,056
_RS13805
Position (kb) 18
19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 17.319 kb on + strand, within EX31_RS13790 at 17.320 kb on - strand, within EX31_RS13790 at 17.320 kb on - strand, within EX31_RS13790 at 17.320 kb on - strand, within EX31_RS13790 at 17.462 kb on + strand, within EX31_RS13790 at 17.581 kb on + strand, within EX31_RS13790 at 17.584 kb on + strand, within EX31_RS13790 at 17.605 kb on + strand, within EX31_RS13790 at 17.610 kb on + strand, within EX31_RS13790 at 17.629 kb on + strand, within EX31_RS13790 at 17.706 kb on - strand, within EX31_RS13790 at 17.706 kb on - strand, within EX31_RS13790 at 17.886 kb on + strand, within EX31_RS13790 at 17.887 kb on - strand, within EX31_RS13790 at 17.915 kb on + strand, within EX31_RS13790 at 17.916 kb on - strand, within EX31_RS13790 at 17.916 kb on - strand, within EX31_RS13790 at 17.941 kb on + strand, within EX31_RS13790 at 17.944 kb on + strand, within EX31_RS13790 at 17.945 kb on - strand, within EX31_RS13790 at 17.979 kb on - strand, within EX31_RS13790 at 18.044 kb on + strand, within EX31_RS13790 at 18.045 kb on - strand, within EX31_RS13790 at 18.193 kb on + strand at 18.193 kb on + strand at 18.193 kb on + strand at 18.194 kb on - strand at 18.194 kb on - strand at 18.196 kb on - strand at 18.196 kb on - strand at 18.293 kb on + strand at 18.306 kb on - strand at 18.461 kb on - strand, within EX31_RS13795 at 18.729 kb on - strand, within EX31_RS13795 at 18.729 kb on - strand, within EX31_RS13795 at 18.729 kb on - strand, within EX31_RS13795 at 18.742 kb on + strand, within EX31_RS13795 at 18.743 kb on - strand, within EX31_RS13795 at 18.812 kb on + strand, within EX31_RS13795 at 18.812 kb on + strand, within EX31_RS13795 at 18.823 kb on - strand, within EX31_RS13795 at 18.870 kb on + strand, within EX31_RS13795 at 18.870 kb on + strand, within EX31_RS13795 at 18.871 kb on - strand, within EX31_RS13795 at 18.871 kb on - strand, within EX31_RS13795 at 18.888 kb on + strand, within EX31_RS13795 at 18.888 kb on + strand, within EX31_RS13795 at 18.889 kb on - strand, within EX31_RS13795 at 18.889 kb on - strand, within EX31_RS13795 at 18.889 kb on - strand, within EX31_RS13795 at 18.889 kb on - strand, within EX31_RS13795 at 18.889 kb on - strand, within EX31_RS13795 at 19.025 kb on - strand, within EX31_RS13795 at 19.025 kb on - strand, within EX31_RS13795 at 19.025 kb on - strand, within EX31_RS13795 at 19.046 kb on - strand, within EX31_RS13795 at 19.145 kb on + strand at 19.173 kb on + strand at 19.173 kb on + strand at 19.173 kb on + strand at 19.174 kb on - strand at 19.174 kb on - strand at 19.174 kb on - strand at 19.174 kb on - strand at 19.223 kb on - strand at 19.223 kb on - strand at 19.223 kb on - strand at 19.223 kb on - strand at 19.243 kb on + strand at 19.244 kb on - strand at 19.244 kb on - strand at 19.244 kb on - strand at 19.581 kb on + strand at 19.619 kb on - strand at 19.619 kb on - strand at 19.625 kb on + strand at 19.798 kb on + strand at 19.798 kb on + strand at 19.889 kb on + strand at 19.889 kb on + strand at 20.073 kb on - strand, within EX31_RS13805 at 20.091 kb on + strand, within EX31_RS13805 at 20.091 kb on + strand, within EX31_RS13805 at 20.127 kb on - strand, within EX31_RS13805 at 20.164 kb on - strand, within EX31_RS13805
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 17,319 + EX31_RS13790 0.53 -0.3 17,320 - EX31_RS13790 0.53 +1.1 17,320 - EX31_RS13790 0.53 +1.1 17,320 - EX31_RS13790 0.53 -2.0 17,462 + EX31_RS13790 0.60 -0.1 17,581 + EX31_RS13790 0.66 +0.7 17,584 + EX31_RS13790 0.66 +0.8 17,605 + EX31_RS13790 0.67 +0.0 17,610 + EX31_RS13790 0.67 -0.3 17,629 + EX31_RS13790 0.68 -0.2 17,706 - EX31_RS13790 0.72 -1.3 17,706 - EX31_RS13790 0.72 +0.8 17,886 + EX31_RS13790 0.81 -1.0 17,887 - EX31_RS13790 0.81 -0.4 17,915 + EX31_RS13790 0.82 -2.0 17,916 - EX31_RS13790 0.82 +0.0 17,916 - EX31_RS13790 0.82 +1.0 17,941 + EX31_RS13790 0.83 -0.1 17,944 + EX31_RS13790 0.84 +0.6 17,945 - EX31_RS13790 0.84 +0.7 17,979 - EX31_RS13790 0.85 +1.3 18,044 + EX31_RS13790 0.88 -0.1 18,045 - EX31_RS13790 0.88 +1.7 18,193 + +0.9 18,193 + -1.6 18,193 + +1.7 18,194 - +0.9 18,194 - +1.1 18,196 - -0.0 18,196 - -1.7 18,293 + +0.4 18,306 - +0.5 18,461 - EX31_RS13795 0.19 +0.8 18,729 - EX31_RS13795 0.49 +1.0 18,729 - EX31_RS13795 0.49 +0.9 18,729 - EX31_RS13795 0.49 +0.1 18,742 + EX31_RS13795 0.51 -0.9 18,743 - EX31_RS13795 0.51 -3.6 18,812 + EX31_RS13795 0.59 -0.5 18,812 + EX31_RS13795 0.59 -0.4 18,823 - EX31_RS13795 0.60 -1.4 18,870 + EX31_RS13795 0.65 +1.9 18,870 + EX31_RS13795 0.65 -1.9 18,871 - EX31_RS13795 0.65 +0.2 18,871 - EX31_RS13795 0.65 -2.0 18,888 + EX31_RS13795 0.67 +0.1 18,888 + EX31_RS13795 0.67 -1.8 18,889 - EX31_RS13795 0.67 -0.4 18,889 - EX31_RS13795 0.67 -0.6 18,889 - EX31_RS13795 0.67 -2.5 18,889 - EX31_RS13795 0.67 -0.1 18,889 - EX31_RS13795 0.67 -0.1 19,025 - EX31_RS13795 0.82 -1.3 19,025 - EX31_RS13795 0.82 -1.0 19,025 - EX31_RS13795 0.82 -0.4 19,046 - EX31_RS13795 0.85 -1.1 19,145 + -0.3 19,173 + +0.8 19,173 + -0.1 19,173 + -1.2 19,174 - -1.1 19,174 - +0.7 19,174 - +1.0 19,174 - -0.4 19,223 - -0.9 19,223 - +0.2 19,223 - +0.3 19,223 - +0.9 19,243 + -0.4 19,244 - -1.0 19,244 - -1.3 19,244 - +0.8 19,581 + +0.0 19,619 - -1.7 19,619 - +1.0 19,625 + +0.4 19,798 + +0.9 19,798 + -1.2 19,889 + -0.5 19,889 + -0.2 20,073 - EX31_RS13805 0.10 -0.0 20,091 + EX31_RS13805 0.12 +0.6 20,091 + EX31_RS13805 0.12 +1.9 20,127 - EX31_RS13805 0.15 +0.0 20,164 - EX31_RS13805 0.19 +1.8
Or see this region's nucleotide sequence