Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS10875 and EX31_RS10880 are separated by 224 nucleotides EX31_RS10880 and EX31_RS10885 are separated by 390 nucleotides EX31_RS10885 and EX31_RS10890 are separated by 283 nucleotides
EX31_RS10875: EX31_RS10875 - DUF445 family protein, at 99,557 to 100,843
_RS10875
EX31_RS10880: EX31_RS10880 - glycerol dehydrogenase, at 101,068 to 102,165
_RS10880
EX31_RS10885: EX31_RS10885 - hypothetical protein, at 102,556 to 102,738
_RS10885
EX31_RS10890: EX31_RS10890 - glucan biosynthesis protein, at 103,022 to 104,680
_RS10890
Position (kb) 101
102
103 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 100.171 kb on + strand, within EX31_RS10875 at 100.171 kb on + strand, within EX31_RS10875 at 100.227 kb on + strand, within EX31_RS10875 at 100.418 kb on + strand, within EX31_RS10875 at 100.444 kb on + strand, within EX31_RS10875 at 100.444 kb on + strand, within EX31_RS10875 at 100.444 kb on + strand, within EX31_RS10875 at 100.444 kb on + strand, within EX31_RS10875 at 100.445 kb on - strand, within EX31_RS10875 at 100.445 kb on - strand, within EX31_RS10875 at 100.448 kb on + strand, within EX31_RS10875 at 100.477 kb on + strand, within EX31_RS10875 at 100.477 kb on + strand, within EX31_RS10875 at 100.478 kb on - strand, within EX31_RS10875 at 100.497 kb on + strand, within EX31_RS10875 at 100.613 kb on - strand, within EX31_RS10875 at 100.697 kb on - strand, within EX31_RS10875 at 100.710 kb on + strand, within EX31_RS10875 at 100.790 kb on + strand at 100.841 kb on + strand at 100.841 kb on + strand at 100.842 kb on - strand at 100.842 kb on - strand at 100.922 kb on - strand at 100.986 kb on - strand at 100.989 kb on - strand at 101.069 kb on + strand at 101.069 kb on + strand at 101.070 kb on - strand at 101.070 kb on - strand at 101.157 kb on + strand at 101.262 kb on - strand, within EX31_RS10880 at 101.262 kb on - strand, within EX31_RS10880 at 101.273 kb on + strand, within EX31_RS10880 at 101.273 kb on + strand, within EX31_RS10880 at 101.273 kb on + strand, within EX31_RS10880 at 101.274 kb on - strand, within EX31_RS10880 at 101.325 kb on + strand, within EX31_RS10880 at 101.326 kb on - strand, within EX31_RS10880 at 101.326 kb on - strand, within EX31_RS10880 at 101.326 kb on - strand, within EX31_RS10880 at 101.383 kb on - strand, within EX31_RS10880 at 101.510 kb on + strand, within EX31_RS10880 at 101.511 kb on - strand, within EX31_RS10880 at 101.511 kb on - strand, within EX31_RS10880 at 101.511 kb on - strand, within EX31_RS10880 at 101.511 kb on - strand, within EX31_RS10880 at 101.595 kb on + strand, within EX31_RS10880 at 101.596 kb on - strand, within EX31_RS10880 at 101.596 kb on - strand, within EX31_RS10880 at 101.596 kb on - strand, within EX31_RS10880 at 101.596 kb on - strand, within EX31_RS10880 at 101.736 kb on - strand, within EX31_RS10880 at 101.736 kb on - strand, within EX31_RS10880 at 101.771 kb on + strand, within EX31_RS10880 at 101.771 kb on + strand, within EX31_RS10880 at 101.881 kb on - strand, within EX31_RS10880 at 101.993 kb on - strand, within EX31_RS10880 at 102.092 kb on + strand at 102.169 kb on - strand at 102.169 kb on - strand at 102.248 kb on + strand at 102.290 kb on + strand at 102.291 kb on - strand at 102.316 kb on + strand at 102.316 kb on + strand at 102.340 kb on - strand at 102.382 kb on - strand at 102.386 kb on - strand at 102.386 kb on - strand at 102.411 kb on + strand at 102.458 kb on + strand at 102.487 kb on - strand at 102.530 kb on + strand at 102.531 kb on - strand at 102.560 kb on - strand at 102.560 kb on - strand at 102.574 kb on + strand at 102.604 kb on - strand, within EX31_RS10885 at 102.762 kb on + strand at 102.762 kb on + strand at 102.800 kb on - strand at 102.842 kb on + strand at 102.886 kb on + strand at 102.886 kb on + strand at 102.886 kb on + strand at 102.887 kb on - strand at 102.887 kb on - strand at 102.890 kb on - strand at 102.958 kb on + strand at 102.959 kb on - strand at 103.023 kb on + strand at 103.023 kb on + strand at 103.024 kb on - strand at 103.024 kb on - strand at 103.024 kb on - strand at 103.050 kb on + strand at 103.051 kb on - strand at 103.051 kb on - strand at 103.051 kb on - strand at 103.081 kb on - strand at 103.081 kb on - strand at 103.086 kb on + strand at 103.132 kb on + strand at 103.132 kb on + strand at 103.133 kb on - strand at 103.133 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 100,171 + EX31_RS10875 0.48 -2.7 100,171 + EX31_RS10875 0.48 +0.5 100,227 + EX31_RS10875 0.52 -0.2 100,418 + EX31_RS10875 0.67 -1.5 100,444 + EX31_RS10875 0.69 +0.1 100,444 + EX31_RS10875 0.69 +1.1 100,444 + EX31_RS10875 0.69 +1.3 100,444 + EX31_RS10875 0.69 +0.2 100,445 - EX31_RS10875 0.69 +0.1 100,445 - EX31_RS10875 0.69 +1.4 100,448 + EX31_RS10875 0.69 +0.3 100,477 + EX31_RS10875 0.71 -0.1 100,477 + EX31_RS10875 0.71 -1.5 100,478 - EX31_RS10875 0.72 -1.2 100,497 + EX31_RS10875 0.73 -0.2 100,613 - EX31_RS10875 0.82 +1.4 100,697 - EX31_RS10875 0.89 +0.4 100,710 + EX31_RS10875 0.90 -0.5 100,790 + -1.4 100,841 + -0.2 100,841 + -0.6 100,842 - -0.9 100,842 - +1.0 100,922 - +1.2 100,986 - +0.5 100,989 - +0.2 101,069 + -0.9 101,069 + +0.3 101,070 - -1.9 101,070 - -1.0 101,157 + -0.1 101,262 - EX31_RS10880 0.18 +0.9 101,262 - EX31_RS10880 0.18 -0.3 101,273 + EX31_RS10880 0.19 -0.7 101,273 + EX31_RS10880 0.19 -1.2 101,273 + EX31_RS10880 0.19 -1.2 101,274 - EX31_RS10880 0.19 -2.9 101,325 + EX31_RS10880 0.23 -1.4 101,326 - EX31_RS10880 0.23 -2.0 101,326 - EX31_RS10880 0.23 -0.4 101,326 - EX31_RS10880 0.23 -0.9 101,383 - EX31_RS10880 0.29 +0.4 101,510 + EX31_RS10880 0.40 -0.6 101,511 - EX31_RS10880 0.40 +0.9 101,511 - EX31_RS10880 0.40 -1.5 101,511 - EX31_RS10880 0.40 +0.1 101,511 - EX31_RS10880 0.40 -1.7 101,595 + EX31_RS10880 0.48 -0.7 101,596 - EX31_RS10880 0.48 +0.8 101,596 - EX31_RS10880 0.48 -2.0 101,596 - EX31_RS10880 0.48 -0.4 101,596 - EX31_RS10880 0.48 +1.3 101,736 - EX31_RS10880 0.61 +0.5 101,736 - EX31_RS10880 0.61 -0.6 101,771 + EX31_RS10880 0.64 -0.3 101,771 + EX31_RS10880 0.64 +0.4 101,881 - EX31_RS10880 0.74 -0.9 101,993 - EX31_RS10880 0.84 -1.6 102,092 + +0.7 102,169 - +0.0 102,169 - +0.7 102,248 + +0.1 102,290 + +1.0 102,291 - +0.8 102,316 + +1.4 102,316 + -0.6 102,340 - +0.6 102,382 - -0.3 102,386 - -1.8 102,386 - -0.8 102,411 + -3.8 102,458 + -1.5 102,487 - +1.3 102,530 + -1.7 102,531 - +0.8 102,560 - -0.9 102,560 - +1.0 102,574 + -0.8 102,604 - EX31_RS10885 0.26 -1.0 102,762 + -0.7 102,762 + +0.6 102,800 - -0.7 102,842 + +0.1 102,886 + +0.2 102,886 + +0.3 102,886 + +0.1 102,887 - -1.7 102,887 - +0.2 102,890 - -1.2 102,958 + -0.6 102,959 - +0.3 103,023 + +0.3 103,023 + +0.6 103,024 - +0.6 103,024 - -1.8 103,024 - -0.3 103,050 + +1.0 103,051 - -0.1 103,051 - +0.2 103,051 - +0.3 103,081 - +0.7 103,081 - +0.5 103,086 + +0.1 103,132 + -0.2 103,132 + -1.6 103,133 - -0.3 103,133 - +0.2
Or see this region's nucleotide sequence