Strain Fitness in Rahnella sp. WP5 around EX31_RS10190

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10185 and EX31_RS10190 overlap by 8 nucleotidesEX31_RS10190 and EX31_RS10195 are separated by 361 nucleotides EX31_RS10185: EX31_RS10185 - O-antigen ligase family protein, at 249,280 to 250,533 _RS10185 EX31_RS10190: EX31_RS10190 - glycosyltransferase, at 250,526 to 251,638 _RS10190 EX31_RS10195: EX31_RS10195 - LysR family transcriptional regulator, at 252,000 to 253,229 _RS10195 Position (kb) 250 251 252Strain fitness (log2 ratio) -3 -2 -1 0 1at 249.582 kb on + strand, within EX31_RS10185at 249.621 kb on + strand, within EX31_RS10185at 249.630 kb on + strand, within EX31_RS10185at 249.648 kb on - strand, within EX31_RS10185at 249.650 kb on - strand, within EX31_RS10185at 249.651 kb on + strand, within EX31_RS10185at 249.652 kb on - strand, within EX31_RS10185at 249.652 kb on - strand, within EX31_RS10185at 249.707 kb on + strand, within EX31_RS10185at 249.838 kb on - strand, within EX31_RS10185at 249.844 kb on - strand, within EX31_RS10185at 250.004 kb on + strand, within EX31_RS10185at 250.119 kb on + strand, within EX31_RS10185at 250.124 kb on - strand, within EX31_RS10185at 250.211 kb on - strand, within EX31_RS10185at 250.264 kb on - strand, within EX31_RS10185at 250.351 kb on - strand, within EX31_RS10185at 250.375 kb on - strand, within EX31_RS10185at 250.582 kb on - strandat 250.582 kb on - strandat 250.582 kb on - strandat 250.712 kb on - strand, within EX31_RS10190at 250.767 kb on + strand, within EX31_RS10190at 250.768 kb on - strand, within EX31_RS10190at 250.867 kb on - strand, within EX31_RS10190at 250.933 kb on - strand, within EX31_RS10190at 250.976 kb on + strand, within EX31_RS10190at 250.977 kb on - strand, within EX31_RS10190at 250.977 kb on - strand, within EX31_RS10190at 251.217 kb on + strand, within EX31_RS10190at 251.535 kb on - strandat 251.702 kb on + strandat 251.703 kb on - strandat 251.703 kb on - strandat 251.706 kb on + strandat 251.803 kb on - strandat 251.914 kb on - strandat 251.914 kb on - strandat 251.917 kb on - strandat 251.925 kb on + strandat 251.925 kb on + strandat 251.950 kb on - strandat 251.964 kb on + strandat 251.988 kb on + strandat 252.449 kb on - strand, within EX31_RS10195at 252.449 kb on - strand, within EX31_RS10195at 252.476 kb on + strand, within EX31_RS10195

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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249,582 + EX31_RS10185 0.24 +0.3
249,621 + EX31_RS10185 0.27 +0.8
249,630 + EX31_RS10185 0.28 +0.8
249,648 - EX31_RS10185 0.29 -0.3
249,650 - EX31_RS10185 0.30 +0.5
249,651 + EX31_RS10185 0.30 +0.9
249,652 - EX31_RS10185 0.30 -3.2
249,652 - EX31_RS10185 0.30 -0.0
249,707 + EX31_RS10185 0.34 -0.0
249,838 - EX31_RS10185 0.44 +0.8
249,844 - EX31_RS10185 0.45 -0.0
250,004 + EX31_RS10185 0.58 -1.8
250,119 + EX31_RS10185 0.67 -0.5
250,124 - EX31_RS10185 0.67 +0.6
250,211 - EX31_RS10185 0.74 -1.3
250,264 - EX31_RS10185 0.78 +0.3
250,351 - EX31_RS10185 0.85 +0.8
250,375 - EX31_RS10185 0.87 +0.9
250,582 - -3.0
250,582 - -2.5
250,582 - +1.5
250,712 - EX31_RS10190 0.17 +0.9
250,767 + EX31_RS10190 0.22 -0.1
250,768 - EX31_RS10190 0.22 -0.5
250,867 - EX31_RS10190 0.31 -1.0
250,933 - EX31_RS10190 0.37 -1.4
250,976 + EX31_RS10190 0.40 -0.3
250,977 - EX31_RS10190 0.41 -0.7
250,977 - EX31_RS10190 0.41 -1.3
251,217 + EX31_RS10190 0.62 -0.7
251,535 - -0.3
251,702 + -0.5
251,703 - -0.4
251,703 - -0.0
251,706 + +1.1
251,803 - +0.3
251,914 - -0.7
251,914 - -0.5
251,917 - -2.7
251,925 + -0.2
251,925 + -0.4
251,950 - -0.4
251,964 + +0.8
251,988 + -1.8
252,449 - EX31_RS10195 0.37 +0.9
252,449 - EX31_RS10195 0.37 +0.3
252,476 + EX31_RS10195 0.39 +1.5

Or see this region's nucleotide sequence