Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS10130 and EX31_RS10135 are separated by 12 nucleotides EX31_RS10135 and EX31_RS10140 are separated by 235 nucleotides
EX31_RS10130: EX31_RS10130 - M81 family metallopeptidase, at 236,272 to 237,705
_RS10130
EX31_RS10135: EX31_RS10135 - ROK family transcriptional regulator, at 237,718 to 238,857
_RS10135
EX31_RS10140: EX31_RS10140 - glycosyl transferase, at 239,093 to 240,637
_RS10140
Position (kb) 237
238
239 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 236.940 kb on - strand, within EX31_RS10130 at 237.039 kb on - strand, within EX31_RS10130 at 237.209 kb on - strand, within EX31_RS10130 at 237.209 kb on - strand, within EX31_RS10130 at 237.283 kb on - strand, within EX31_RS10130 at 237.283 kb on - strand, within EX31_RS10130 at 237.329 kb on + strand, within EX31_RS10130 at 237.329 kb on + strand, within EX31_RS10130 at 237.330 kb on - strand, within EX31_RS10130 at 237.416 kb on + strand, within EX31_RS10130 at 237.417 kb on - strand, within EX31_RS10130 at 237.417 kb on - strand, within EX31_RS10130 at 237.417 kb on - strand, within EX31_RS10130 at 237.441 kb on - strand, within EX31_RS10130 at 237.499 kb on - strand, within EX31_RS10130 at 237.503 kb on + strand, within EX31_RS10130 at 237.573 kb on - strand at 237.573 kb on - strand at 237.662 kb on + strand at 237.663 kb on - strand at 237.699 kb on + strand at 237.699 kb on + strand at 237.700 kb on - strand at 237.758 kb on - strand at 237.799 kb on - strand at 237.863 kb on - strand, within EX31_RS10135 at 237.863 kb on - strand, within EX31_RS10135 at 238.081 kb on - strand, within EX31_RS10135 at 238.081 kb on - strand, within EX31_RS10135 at 238.255 kb on - strand, within EX31_RS10135 at 238.667 kb on - strand, within EX31_RS10135 at 238.667 kb on - strand, within EX31_RS10135 at 238.802 kb on - strand at 238.853 kb on - strand at 238.902 kb on - strand at 238.902 kb on - strand at 238.909 kb on - strand at 238.920 kb on + strand at 238.920 kb on + strand at 238.920 kb on + strand at 238.920 kb on + strand at 238.920 kb on + strand at 238.920 kb on + strand at 238.920 kb on + strand at 238.920 kb on + strand at 238.920 kb on + strand at 238.920 kb on + strand at 238.920 kb on + strand at 238.920 kb on + strand at 238.920 kb on + strand at 238.920 kb on + strand at 238.920 kb on + strand at 238.920 kb on + strand at 238.920 kb on + strand at 238.920 kb on + strand at 238.920 kb on + strand at 238.920 kb on + strand at 238.920 kb on + strand at 238.920 kb on + strand at 238.920 kb on + strand at 238.920 kb on + strand at 238.920 kb on + strand at 238.921 kb on - strand at 238.921 kb on - strand at 238.921 kb on - strand at 238.921 kb on - strand at 238.921 kb on - strand at 238.921 kb on - strand at 238.921 kb on - strand at 238.921 kb on - strand at 238.962 kb on + strand at 239.064 kb on - strand at 239.064 kb on - strand at 239.064 kb on - strand at 239.064 kb on - strand at 239.276 kb on + strand, within EX31_RS10140 at 239.277 kb on - strand, within EX31_RS10140 at 239.405 kb on - strand, within EX31_RS10140 at 239.492 kb on - strand, within EX31_RS10140 at 239.717 kb on + strand, within EX31_RS10140 at 239.729 kb on - strand, within EX31_RS10140 at 239.752 kb on + strand, within EX31_RS10140 at 239.752 kb on + strand, within EX31_RS10140 at 239.752 kb on + strand, within EX31_RS10140 at 239.753 kb on - strand, within EX31_RS10140 at 239.753 kb on - strand, within EX31_RS10140 at 239.753 kb on - strand, within EX31_RS10140 at 239.753 kb on - strand, within EX31_RS10140 at 239.753 kb on - strand, within EX31_RS10140
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 236,940 - EX31_RS10130 0.47 -0.3 237,039 - EX31_RS10130 0.53 +1.8 237,209 - EX31_RS10130 0.65 -0.8 237,209 - EX31_RS10130 0.65 +0.1 237,283 - EX31_RS10130 0.71 -1.2 237,283 - EX31_RS10130 0.71 +0.6 237,329 + EX31_RS10130 0.74 -2.1 237,329 + EX31_RS10130 0.74 -0.1 237,330 - EX31_RS10130 0.74 -0.9 237,416 + EX31_RS10130 0.80 +0.2 237,417 - EX31_RS10130 0.80 +0.3 237,417 - EX31_RS10130 0.80 -0.0 237,417 - EX31_RS10130 0.80 -3.8 237,441 - EX31_RS10130 0.82 -1.3 237,499 - EX31_RS10130 0.86 +0.3 237,503 + EX31_RS10130 0.86 -1.0 237,573 - -1.4 237,573 - -0.1 237,662 + -0.1 237,663 - -0.7 237,699 + -0.5 237,699 + -0.2 237,700 - +0.6 237,758 - +0.1 237,799 - +1.0 237,863 - EX31_RS10135 0.13 -1.6 237,863 - EX31_RS10135 0.13 -0.5 238,081 - EX31_RS10135 0.32 -1.6 238,081 - EX31_RS10135 0.32 -1.2 238,255 - EX31_RS10135 0.47 -2.8 238,667 - EX31_RS10135 0.83 +0.5 238,667 - EX31_RS10135 0.83 -0.5 238,802 - +2.0 238,853 - +0.1 238,902 - -0.3 238,902 - -0.9 238,909 - -0.1 238,920 + -0.4 238,920 + -0.2 238,920 + +0.9 238,920 + +0.9 238,920 + -0.3 238,920 + +0.2 238,920 + +0.4 238,920 + -0.5 238,920 + -0.1 238,920 + +0.4 238,920 + -2.2 238,920 + -0.5 238,920 + -1.2 238,920 + +0.2 238,920 + +0.6 238,920 + -0.1 238,920 + -0.2 238,920 + +0.8 238,920 + -0.8 238,920 + -1.1 238,920 + -0.0 238,920 + +1.3 238,920 + -0.4 238,920 + +0.4 238,920 + -0.8 238,921 - -0.0 238,921 - +1.8 238,921 - -0.5 238,921 - -0.6 238,921 - -0.4 238,921 - -0.7 238,921 - +0.1 238,921 - -0.7 238,962 + -3.6 239,064 - +0.6 239,064 - +0.6 239,064 - -1.3 239,064 - +0.0 239,276 + EX31_RS10140 0.12 +0.1 239,277 - EX31_RS10140 0.12 -0.5 239,405 - EX31_RS10140 0.20 -0.6 239,492 - EX31_RS10140 0.26 +0.3 239,717 + EX31_RS10140 0.40 +0.3 239,729 - EX31_RS10140 0.41 +1.8 239,752 + EX31_RS10140 0.43 +1.1 239,752 + EX31_RS10140 0.43 -0.0 239,752 + EX31_RS10140 0.43 +0.7 239,753 - EX31_RS10140 0.43 -2.6 239,753 - EX31_RS10140 0.43 -1.7 239,753 - EX31_RS10140 0.43 -1.9 239,753 - EX31_RS10140 0.43 +1.0 239,753 - EX31_RS10140 0.43 -2.1
Or see this region's nucleotide sequence