Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09925 and EX31_RS09930 are separated by 16 nucleotides EX31_RS09930 and EX31_RS09935 are separated by 25 nucleotides EX31_RS09935 and EX31_RS09940 are separated by 148 nucleotides
EX31_RS09925: EX31_RS09925 - alpha-ribazole phosphatase, at 194,303 to 194,899
_RS09925
EX31_RS09930: EX31_RS09930 - adenosylcobinamide-GDP ribazoletransferase, at 194,916 to 195,668
_RS09930
EX31_RS09935: EX31_RS09935 - bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase, at 195,694 to 196,248
_RS09935
EX31_RS09940: EX31_RS09940 - 23S rRNA pseudouridine(2605) synthase RluB, at 196,397 to 197,716
_RS09940
Position (kb) 195
196
197 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 194.738 kb on - strand, within EX31_RS09925 at 194.926 kb on - strand at 195.051 kb on + strand, within EX31_RS09930 at 195.069 kb on + strand, within EX31_RS09930 at 195.108 kb on + strand, within EX31_RS09930 at 195.109 kb on - strand, within EX31_RS09930 at 195.109 kb on - strand, within EX31_RS09930 at 195.116 kb on + strand, within EX31_RS09930 at 195.116 kb on + strand, within EX31_RS09930 at 195.140 kb on + strand, within EX31_RS09930 at 195.190 kb on + strand, within EX31_RS09930 at 195.190 kb on + strand, within EX31_RS09930 at 195.190 kb on + strand, within EX31_RS09930 at 195.191 kb on - strand, within EX31_RS09930 at 195.237 kb on - strand, within EX31_RS09930 at 195.278 kb on - strand, within EX31_RS09930 at 195.353 kb on + strand, within EX31_RS09930 at 195.365 kb on + strand, within EX31_RS09930 at 195.391 kb on - strand, within EX31_RS09930 at 195.391 kb on - strand, within EX31_RS09930 at 195.427 kb on - strand, within EX31_RS09930 at 195.427 kb on - strand, within EX31_RS09930 at 195.427 kb on - strand, within EX31_RS09930 at 195.444 kb on - strand, within EX31_RS09930 at 195.446 kb on + strand, within EX31_RS09930 at 195.446 kb on + strand, within EX31_RS09930 at 195.447 kb on - strand, within EX31_RS09930 at 195.447 kb on - strand, within EX31_RS09930 at 195.447 kb on - strand, within EX31_RS09930 at 195.447 kb on - strand, within EX31_RS09930 at 195.574 kb on + strand, within EX31_RS09930 at 195.574 kb on + strand, within EX31_RS09930 at 195.574 kb on + strand, within EX31_RS09930 at 195.575 kb on - strand, within EX31_RS09930 at 195.575 kb on - strand, within EX31_RS09930 at 195.575 kb on - strand, within EX31_RS09930 at 195.661 kb on - strand at 195.671 kb on + strand at 195.672 kb on - strand at 195.672 kb on - strand at 195.695 kb on + strand at 195.696 kb on - strand at 195.741 kb on - strand at 195.741 kb on - strand at 195.741 kb on - strand at 195.790 kb on - strand, within EX31_RS09935 at 195.926 kb on - strand, within EX31_RS09935 at 196.014 kb on + strand, within EX31_RS09935 at 196.080 kb on + strand, within EX31_RS09935 at 196.081 kb on - strand, within EX31_RS09935 at 196.143 kb on + strand, within EX31_RS09935 at 196.143 kb on + strand, within EX31_RS09935 at 196.144 kb on - strand, within EX31_RS09935 at 196.148 kb on - strand, within EX31_RS09935 at 196.163 kb on + strand, within EX31_RS09935 at 196.163 kb on + strand, within EX31_RS09935 at 196.164 kb on - strand, within EX31_RS09935 at 196.164 kb on - strand, within EX31_RS09935 at 196.164 kb on - strand, within EX31_RS09935 at 196.164 kb on - strand, within EX31_RS09935 at 196.164 kb on - strand, within EX31_RS09935 at 196.216 kb on - strand at 196.240 kb on + strand at 196.249 kb on - strand at 196.267 kb on + strand at 196.267 kb on + strand at 196.270 kb on + strand at 196.280 kb on + strand at 196.280 kb on + strand at 196.312 kb on + strand at 196.369 kb on + strand at 196.370 kb on - strand at 196.448 kb on - strand at 196.484 kb on + strand at 196.558 kb on - strand, within EX31_RS09940 at 196.558 kb on - strand, within EX31_RS09940 at 196.558 kb on - strand, within EX31_RS09940 at 196.558 kb on - strand, within EX31_RS09940 at 196.586 kb on - strand, within EX31_RS09940 at 196.588 kb on - strand, within EX31_RS09940 at 196.723 kb on - strand, within EX31_RS09940 at 196.723 kb on - strand, within EX31_RS09940 at 196.723 kb on - strand, within EX31_RS09940 at 196.847 kb on + strand, within EX31_RS09940 at 196.848 kb on - strand, within EX31_RS09940 at 196.855 kb on - strand, within EX31_RS09940 at 196.920 kb on - strand, within EX31_RS09940 at 196.956 kb on - strand, within EX31_RS09940 at 197.056 kb on - strand, within EX31_RS09940 at 197.056 kb on - strand, within EX31_RS09940 at 197.056 kb on - strand, within EX31_RS09940 at 197.056 kb on - strand, within EX31_RS09940 at 197.056 kb on - strand, within EX31_RS09940 at 197.056 kb on - strand, within EX31_RS09940 at 197.056 kb on - strand, within EX31_RS09940 at 197.056 kb on - strand, within EX31_RS09940 at 197.056 kb on - strand, within EX31_RS09940 at 197.059 kb on - strand, within EX31_RS09940 at 197.059 kb on - strand, within EX31_RS09940 at 197.059 kb on - strand, within EX31_RS09940 at 197.059 kb on - strand, within EX31_RS09940 at 197.059 kb on - strand, within EX31_RS09940 at 197.059 kb on - strand, within EX31_RS09940
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 194,738 - EX31_RS09925 0.73 +0.1 194,926 - -1.4 195,051 + EX31_RS09930 0.18 -0.4 195,069 + EX31_RS09930 0.20 -1.0 195,108 + EX31_RS09930 0.25 -2.2 195,109 - EX31_RS09930 0.26 +0.8 195,109 - EX31_RS09930 0.26 +0.8 195,116 + EX31_RS09930 0.27 +0.7 195,116 + EX31_RS09930 0.27 -1.6 195,140 + EX31_RS09930 0.30 -1.2 195,190 + EX31_RS09930 0.36 -1.2 195,190 + EX31_RS09930 0.36 -0.8 195,190 + EX31_RS09930 0.36 +0.3 195,191 - EX31_RS09930 0.37 -0.5 195,237 - EX31_RS09930 0.43 -1.1 195,278 - EX31_RS09930 0.48 +0.4 195,353 + EX31_RS09930 0.58 -0.3 195,365 + EX31_RS09930 0.60 -1.1 195,391 - EX31_RS09930 0.63 -1.5 195,391 - EX31_RS09930 0.63 -0.1 195,427 - EX31_RS09930 0.68 +0.8 195,427 - EX31_RS09930 0.68 -0.7 195,427 - EX31_RS09930 0.68 -0.5 195,444 - EX31_RS09930 0.70 +0.5 195,446 + EX31_RS09930 0.70 -1.3 195,446 + EX31_RS09930 0.70 +0.6 195,447 - EX31_RS09930 0.71 +1.3 195,447 - EX31_RS09930 0.71 +0.1 195,447 - EX31_RS09930 0.71 -1.0 195,447 - EX31_RS09930 0.71 +0.1 195,574 + EX31_RS09930 0.87 +1.1 195,574 + EX31_RS09930 0.87 -1.1 195,574 + EX31_RS09930 0.87 -1.6 195,575 - EX31_RS09930 0.88 -0.2 195,575 - EX31_RS09930 0.88 -0.9 195,575 - EX31_RS09930 0.88 -1.4 195,661 - +0.9 195,671 + +1.0 195,672 - -0.4 195,672 - +0.7 195,695 + +0.3 195,696 - -1.0 195,741 - -0.3 195,741 - -0.7 195,741 - +1.1 195,790 - EX31_RS09935 0.17 -0.9 195,926 - EX31_RS09935 0.42 -1.5 196,014 + EX31_RS09935 0.58 -0.9 196,080 + EX31_RS09935 0.70 -0.1 196,081 - EX31_RS09935 0.70 -2.1 196,143 + EX31_RS09935 0.81 +0.6 196,143 + EX31_RS09935 0.81 -1.4 196,144 - EX31_RS09935 0.81 -0.7 196,148 - EX31_RS09935 0.82 -1.0 196,163 + EX31_RS09935 0.85 -1.7 196,163 + EX31_RS09935 0.85 +0.1 196,164 - EX31_RS09935 0.85 +0.5 196,164 - EX31_RS09935 0.85 +0.5 196,164 - EX31_RS09935 0.85 -0.9 196,164 - EX31_RS09935 0.85 -1.5 196,164 - EX31_RS09935 0.85 +0.2 196,216 - -0.5 196,240 + +0.5 196,249 - -0.2 196,267 + +0.0 196,267 + +0.5 196,270 + -0.8 196,280 + +0.0 196,280 + -0.3 196,312 + +0.9 196,369 + -0.0 196,370 - -1.0 196,448 - +1.1 196,484 + +1.6 196,558 - EX31_RS09940 0.12 +0.7 196,558 - EX31_RS09940 0.12 -2.2 196,558 - EX31_RS09940 0.12 -2.1 196,558 - EX31_RS09940 0.12 -0.1 196,586 - EX31_RS09940 0.14 +0.3 196,588 - EX31_RS09940 0.14 +1.0 196,723 - EX31_RS09940 0.25 -0.5 196,723 - EX31_RS09940 0.25 -0.0 196,723 - EX31_RS09940 0.25 +0.3 196,847 + EX31_RS09940 0.34 -1.0 196,848 - EX31_RS09940 0.34 -0.2 196,855 - EX31_RS09940 0.35 -3.0 196,920 - EX31_RS09940 0.40 -0.5 196,956 - EX31_RS09940 0.42 -1.0 197,056 - EX31_RS09940 0.50 -2.5 197,056 - EX31_RS09940 0.50 -0.5 197,056 - EX31_RS09940 0.50 +0.8 197,056 - EX31_RS09940 0.50 -0.6 197,056 - EX31_RS09940 0.50 +1.2 197,056 - EX31_RS09940 0.50 +0.6 197,056 - EX31_RS09940 0.50 +0.2 197,056 - EX31_RS09940 0.50 -0.1 197,056 - EX31_RS09940 0.50 +0.1 197,059 - EX31_RS09940 0.50 -0.7 197,059 - EX31_RS09940 0.50 -0.1 197,059 - EX31_RS09940 0.50 -2.4 197,059 - EX31_RS09940 0.50 -0.2 197,059 - EX31_RS09940 0.50 -0.3 197,059 - EX31_RS09940 0.50 -1.2
Or see this region's nucleotide sequence