Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09615 and EX31_RS09620 overlap by 4 nucleotides EX31_RS09620 and EX31_RS09625 are separated by 12 nucleotides EX31_RS09625 and EX31_RS09630 are separated by 268 nucleotides
EX31_RS09615: EX31_RS09615 - putrescine ABC transporter permease PotI, at 125,099 to 125,944
_RS09615
EX31_RS09620: EX31_RS09620 - putrescine ABC transporter permease PotH, at 125,941 to 126,894
_RS09620
EX31_RS09625: EX31_RS09625 - putrescine ABC transporter ATP-binding subunit PotG, at 126,907 to 128,040
_RS09625
EX31_RS09630: EX31_RS09630 - spermidine/putrescine ABC transporter substrate-binding protein PotF, at 128,309 to 129,418
_RS09630
Position (kb) 126
127
128
129 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 125.991 kb on + strand at 126.090 kb on + strand, within EX31_RS09620 at 126.091 kb on - strand, within EX31_RS09620 at 126.093 kb on + strand, within EX31_RS09620 at 126.094 kb on - strand, within EX31_RS09620 at 126.128 kb on + strand, within EX31_RS09620 at 126.129 kb on - strand, within EX31_RS09620 at 126.129 kb on - strand, within EX31_RS09620 at 126.129 kb on - strand, within EX31_RS09620 at 126.301 kb on - strand, within EX31_RS09620 at 126.311 kb on + strand, within EX31_RS09620 at 126.312 kb on - strand, within EX31_RS09620 at 126.312 kb on - strand, within EX31_RS09620 at 126.332 kb on + strand, within EX31_RS09620 at 126.332 kb on + strand, within EX31_RS09620 at 126.332 kb on + strand, within EX31_RS09620 at 126.333 kb on - strand, within EX31_RS09620 at 126.333 kb on - strand, within EX31_RS09620 at 126.395 kb on - strand, within EX31_RS09620 at 126.399 kb on + strand, within EX31_RS09620 at 126.406 kb on + strand, within EX31_RS09620 at 126.609 kb on + strand, within EX31_RS09620 at 126.611 kb on + strand, within EX31_RS09620 at 126.612 kb on - strand, within EX31_RS09620 at 126.638 kb on + strand, within EX31_RS09620 at 126.639 kb on - strand, within EX31_RS09620 at 126.696 kb on + strand, within EX31_RS09620 at 126.697 kb on - strand, within EX31_RS09620 at 127.015 kb on - strand at 127.046 kb on + strand, within EX31_RS09625 at 127.068 kb on - strand, within EX31_RS09625 at 127.160 kb on + strand, within EX31_RS09625 at 127.160 kb on + strand, within EX31_RS09625 at 127.160 kb on + strand, within EX31_RS09625 at 127.160 kb on + strand, within EX31_RS09625 at 127.161 kb on - strand, within EX31_RS09625 at 127.161 kb on - strand, within EX31_RS09625 at 127.161 kb on - strand, within EX31_RS09625 at 127.161 kb on - strand, within EX31_RS09625 at 127.161 kb on - strand, within EX31_RS09625 at 127.161 kb on - strand, within EX31_RS09625 at 127.276 kb on + strand, within EX31_RS09625 at 127.277 kb on - strand, within EX31_RS09625 at 127.277 kb on - strand, within EX31_RS09625 at 127.627 kb on - strand, within EX31_RS09625 at 127.742 kb on + strand, within EX31_RS09625 at 127.911 kb on + strand, within EX31_RS09625 at 127.914 kb on - strand, within EX31_RS09625 at 127.914 kb on - strand, within EX31_RS09625 at 128.010 kb on + strand at 128.010 kb on + strand at 128.011 kb on - strand at 128.080 kb on - strand at 128.080 kb on - strand at 128.085 kb on + strand at 128.126 kb on + strand at 128.311 kb on - strand at 128.311 kb on - strand at 128.311 kb on - strand at 128.311 kb on - strand at 128.323 kb on + strand at 128.482 kb on - strand, within EX31_RS09630 at 128.482 kb on - strand, within EX31_RS09630 at 128.530 kb on - strand, within EX31_RS09630 at 128.737 kb on - strand, within EX31_RS09630 at 128.987 kb on - strand, within EX31_RS09630 at 128.998 kb on - strand, within EX31_RS09630
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 125,991 + +0.0 126,090 + EX31_RS09620 0.16 -1.2 126,091 - EX31_RS09620 0.16 -0.0 126,093 + EX31_RS09620 0.16 +0.3 126,094 - EX31_RS09620 0.16 -0.5 126,128 + EX31_RS09620 0.20 -0.9 126,129 - EX31_RS09620 0.20 +0.1 126,129 - EX31_RS09620 0.20 -1.2 126,129 - EX31_RS09620 0.20 -0.3 126,301 - EX31_RS09620 0.38 +1.1 126,311 + EX31_RS09620 0.39 -0.2 126,312 - EX31_RS09620 0.39 -1.1 126,312 - EX31_RS09620 0.39 -1.3 126,332 + EX31_RS09620 0.41 +0.2 126,332 + EX31_RS09620 0.41 -2.1 126,332 + EX31_RS09620 0.41 +0.1 126,333 - EX31_RS09620 0.41 +0.6 126,333 - EX31_RS09620 0.41 +0.4 126,395 - EX31_RS09620 0.48 +2.0 126,399 + EX31_RS09620 0.48 +0.4 126,406 + EX31_RS09620 0.49 -1.2 126,609 + EX31_RS09620 0.70 +1.3 126,611 + EX31_RS09620 0.70 +0.0 126,612 - EX31_RS09620 0.70 +1.2 126,638 + EX31_RS09620 0.73 +0.4 126,639 - EX31_RS09620 0.73 -0.7 126,696 + EX31_RS09620 0.79 -2.1 126,697 - EX31_RS09620 0.79 -0.0 127,015 - +0.2 127,046 + EX31_RS09625 0.12 -2.9 127,068 - EX31_RS09625 0.14 +0.1 127,160 + EX31_RS09625 0.22 +0.4 127,160 + EX31_RS09625 0.22 +2.1 127,160 + EX31_RS09625 0.22 +1.9 127,160 + EX31_RS09625 0.22 -1.6 127,161 - EX31_RS09625 0.22 -1.3 127,161 - EX31_RS09625 0.22 +0.2 127,161 - EX31_RS09625 0.22 +2.1 127,161 - EX31_RS09625 0.22 -1.5 127,161 - EX31_RS09625 0.22 -0.7 127,161 - EX31_RS09625 0.22 +1.2 127,276 + EX31_RS09625 0.33 -1.7 127,277 - EX31_RS09625 0.33 +1.5 127,277 - EX31_RS09625 0.33 -0.1 127,627 - EX31_RS09625 0.63 +1.5 127,742 + EX31_RS09625 0.74 -2.7 127,911 + EX31_RS09625 0.89 +0.5 127,914 - EX31_RS09625 0.89 +0.9 127,914 - EX31_RS09625 0.89 -0.3 128,010 + -2.1 128,010 + -1.9 128,011 - -0.9 128,080 - -1.5 128,080 - -0.1 128,085 + -1.6 128,126 + -0.4 128,311 - -0.5 128,311 - +1.0 128,311 - -0.1 128,311 - -0.0 128,323 + -1.2 128,482 - EX31_RS09630 0.16 +0.7 128,482 - EX31_RS09630 0.16 -0.5 128,530 - EX31_RS09630 0.20 +2.0 128,737 - EX31_RS09630 0.39 -0.3 128,987 - EX31_RS09630 0.61 +0.5 128,998 - EX31_RS09630 0.62 +0.8
Or see this region's nucleotide sequence