Strain Fitness in Rahnella sp. WP5 around EX31_RS09445

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS09440 and EX31_RS09445 are separated by 188 nucleotidesEX31_RS09445 and EX31_RS09450 are separated by 54 nucleotides EX31_RS09440: EX31_RS09440 - D-cysteine desulfhydrase, at 97,553 to 98,563 _RS09440 EX31_RS09445: EX31_RS09445 - flagella biosynthesis regulatory protein FliZ, at 98,752 to 99,258 _RS09445 EX31_RS09450: EX31_RS09450 - RNA polymerase sigma factor FliA, at 99,313 to 100,035 _RS09450 Position (kb) 98 99 100Strain fitness (log2 ratio) -3 -2 -1 0 1at 97.774 kb on - strand, within EX31_RS09440at 97.790 kb on - strand, within EX31_RS09440at 97.790 kb on - strand, within EX31_RS09440at 97.817 kb on + strand, within EX31_RS09440at 97.818 kb on - strand, within EX31_RS09440at 97.818 kb on - strand, within EX31_RS09440at 97.889 kb on + strand, within EX31_RS09440at 97.890 kb on - strand, within EX31_RS09440at 98.085 kb on + strand, within EX31_RS09440at 98.218 kb on - strand, within EX31_RS09440at 98.218 kb on - strand, within EX31_RS09440at 98.303 kb on + strand, within EX31_RS09440at 98.303 kb on + strand, within EX31_RS09440at 98.304 kb on - strand, within EX31_RS09440at 98.434 kb on + strand, within EX31_RS09440at 98.439 kb on + strand, within EX31_RS09440at 98.439 kb on + strand, within EX31_RS09440at 98.440 kb on - strand, within EX31_RS09440at 98.440 kb on - strand, within EX31_RS09440at 98.539 kb on + strandat 98.608 kb on - strandat 98.629 kb on - strandat 98.639 kb on + strandat 98.647 kb on - strandat 98.650 kb on + strandat 98.650 kb on + strandat 98.650 kb on + strandat 98.650 kb on + strandat 98.650 kb on + strandat 98.652 kb on + strandat 98.652 kb on + strandat 98.652 kb on + strandat 98.653 kb on - strandat 98.653 kb on - strandat 98.777 kb on + strandat 98.778 kb on - strandat 98.778 kb on - strandat 98.786 kb on + strandat 98.787 kb on - strandat 98.787 kb on - strandat 98.808 kb on - strand, within EX31_RS09445at 98.808 kb on - strand, within EX31_RS09445at 98.808 kb on - strand, within EX31_RS09445at 98.808 kb on - strand, within EX31_RS09445at 98.808 kb on - strand, within EX31_RS09445at 98.857 kb on - strand, within EX31_RS09445at 98.885 kb on + strand, within EX31_RS09445at 98.886 kb on - strand, within EX31_RS09445at 98.886 kb on - strand, within EX31_RS09445at 98.886 kb on - strand, within EX31_RS09445at 98.886 kb on - strand, within EX31_RS09445at 98.886 kb on - strand, within EX31_RS09445at 98.886 kb on - strand, within EX31_RS09445at 98.886 kb on - strand, within EX31_RS09445at 98.934 kb on - strand, within EX31_RS09445at 98.934 kb on - strand, within EX31_RS09445at 98.934 kb on - strand, within EX31_RS09445at 98.934 kb on - strand, within EX31_RS09445at 98.934 kb on - strand, within EX31_RS09445at 98.934 kb on - strand, within EX31_RS09445at 98.934 kb on - strand, within EX31_RS09445at 98.934 kb on - strand, within EX31_RS09445at 98.979 kb on - strand, within EX31_RS09445at 98.979 kb on - strand, within EX31_RS09445at 98.986 kb on - strand, within EX31_RS09445at 98.995 kb on - strand, within EX31_RS09445at 99.022 kb on - strand, within EX31_RS09445at 99.029 kb on - strand, within EX31_RS09445at 99.029 kb on - strand, within EX31_RS09445at 99.097 kb on - strand, within EX31_RS09445at 99.097 kb on - strand, within EX31_RS09445at 99.097 kb on - strand, within EX31_RS09445at 99.097 kb on - strand, within EX31_RS09445at 99.126 kb on + strand, within EX31_RS09445at 99.127 kb on - strand, within EX31_RS09445at 99.127 kb on - strand, within EX31_RS09445at 99.259 kb on - strandat 99.274 kb on - strandat 99.280 kb on + strandat 99.282 kb on + strandat 99.282 kb on + strandat 99.282 kb on + strandat 99.283 kb on - strandat 99.283 kb on - strandat 99.283 kb on - strandat 99.283 kb on - strandat 99.283 kb on - strandat 99.283 kb on - strandat 99.283 kb on - strandat 99.283 kb on - strandat 99.283 kb on - strandat 99.283 kb on - strandat 99.283 kb on - strandat 99.290 kb on - strandat 99.290 kb on - strandat 99.290 kb on - strandat 99.349 kb on - strandat 99.374 kb on - strandat 99.374 kb on - strandat 99.374 kb on - strandat 99.438 kb on - strand, within EX31_RS09450at 99.438 kb on - strand, within EX31_RS09450at 99.438 kb on - strand, within EX31_RS09450at 99.438 kb on - strand, within EX31_RS09450at 99.445 kb on - strand, within EX31_RS09450at 99.445 kb on - strand, within EX31_RS09450at 99.445 kb on - strand, within EX31_RS09450at 99.445 kb on - strand, within EX31_RS09450at 99.445 kb on - strand, within EX31_RS09450at 99.448 kb on + strand, within EX31_RS09450at 99.449 kb on - strand, within EX31_RS09450at 99.449 kb on - strand, within EX31_RS09450at 99.449 kb on - strand, within EX31_RS09450at 99.449 kb on - strand, within EX31_RS09450at 99.449 kb on - strand, within EX31_RS09450at 99.508 kb on - strand, within EX31_RS09450at 99.508 kb on - strand, within EX31_RS09450at 99.508 kb on - strand, within EX31_RS09450at 99.527 kb on - strand, within EX31_RS09450at 99.527 kb on - strand, within EX31_RS09450at 99.599 kb on + strand, within EX31_RS09450at 99.615 kb on + strand, within EX31_RS09450at 99.616 kb on - strand, within EX31_RS09450at 99.624 kb on + strand, within EX31_RS09450at 99.632 kb on - strand, within EX31_RS09450at 99.632 kb on - strand, within EX31_RS09450at 99.635 kb on - strand, within EX31_RS09450at 99.635 kb on - strand, within EX31_RS09450at 99.635 kb on - strand, within EX31_RS09450at 99.751 kb on - strand, within EX31_RS09450at 99.751 kb on - strand, within EX31_RS09450at 99.813 kb on + strand, within EX31_RS09450at 99.827 kb on + strand, within EX31_RS09450at 99.828 kb on - strand, within EX31_RS09450at 99.828 kb on - strand, within EX31_RS09450at 99.828 kb on - strand, within EX31_RS09450at 99.877 kb on + strand, within EX31_RS09450at 99.878 kb on - strand, within EX31_RS09450at 99.905 kb on - strand, within EX31_RS09450at 99.905 kb on - strand, within EX31_RS09450at 99.978 kb on - strandat 99.978 kb on - strandat 100.020 kb on + strandat 100.023 kb on - strandat 100.023 kb on - strandat 100.023 kb on - strandat 100.023 kb on - strandat 100.023 kb on - strandat 100.023 kb on - strandat 100.042 kb on - strandat 100.104 kb on + strandat 100.105 kb on - strandat 100.134 kb on - strandat 100.134 kb on - strandat 100.225 kb on - strandat 100.247 kb on - strandat 100.247 kb on - strandat 100.247 kb on - strandat 100.247 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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97,774 - EX31_RS09440 0.22 -0.7
97,790 - EX31_RS09440 0.23 +0.5
97,790 - EX31_RS09440 0.23 -0.5
97,817 + EX31_RS09440 0.26 -0.9
97,818 - EX31_RS09440 0.26 -0.6
97,818 - EX31_RS09440 0.26 +0.7
97,889 + EX31_RS09440 0.33 +0.9
97,890 - EX31_RS09440 0.33 -0.4
98,085 + EX31_RS09440 0.53 +0.1
98,218 - EX31_RS09440 0.66 -0.6
98,218 - EX31_RS09440 0.66 -1.4
98,303 + EX31_RS09440 0.74 +0.9
98,303 + EX31_RS09440 0.74 +0.3
98,304 - EX31_RS09440 0.74 +0.3
98,434 + EX31_RS09440 0.87 -0.7
98,439 + EX31_RS09440 0.88 +0.2
98,439 + EX31_RS09440 0.88 +0.1
98,440 - EX31_RS09440 0.88 -0.2
98,440 - EX31_RS09440 0.88 -0.2
98,539 + -0.7
98,608 - +0.2
98,629 - -0.3
98,639 + +0.1
98,647 - -3.0
98,650 + -2.2
98,650 + +0.0
98,650 + -0.4
98,650 + +0.3
98,650 + -0.7
98,652 + +0.9
98,652 + +0.3
98,652 + +1.1
98,653 - -1.9
98,653 - -2.1
98,777 + -0.9
98,778 - +0.4
98,778 - -0.4
98,786 + -1.2
98,787 - +0.0
98,787 - +0.3
98,808 - EX31_RS09445 0.11 -0.5
98,808 - EX31_RS09445 0.11 -0.1
98,808 - EX31_RS09445 0.11 -2.7
98,808 - EX31_RS09445 0.11 -1.1
98,808 - EX31_RS09445 0.11 +0.1
98,857 - EX31_RS09445 0.21 -0.4
98,885 + EX31_RS09445 0.26 -0.3
98,886 - EX31_RS09445 0.26 -0.7
98,886 - EX31_RS09445 0.26 -0.2
98,886 - EX31_RS09445 0.26 +0.4
98,886 - EX31_RS09445 0.26 +0.4
98,886 - EX31_RS09445 0.26 +0.3
98,886 - EX31_RS09445 0.26 +0.0
98,886 - EX31_RS09445 0.26 -0.5
98,934 - EX31_RS09445 0.36 -3.0
98,934 - EX31_RS09445 0.36 +0.2
98,934 - EX31_RS09445 0.36 +1.0
98,934 - EX31_RS09445 0.36 +0.5
98,934 - EX31_RS09445 0.36 -0.2
98,934 - EX31_RS09445 0.36 -1.7
98,934 - EX31_RS09445 0.36 -0.3
98,934 - EX31_RS09445 0.36 -1.3
98,979 - EX31_RS09445 0.45 -0.1
98,979 - EX31_RS09445 0.45 -1.4
98,986 - EX31_RS09445 0.46 -0.2
98,995 - EX31_RS09445 0.48 -0.6
99,022 - EX31_RS09445 0.53 -0.9
99,029 - EX31_RS09445 0.55 -1.3
99,029 - EX31_RS09445 0.55 -1.8
99,097 - EX31_RS09445 0.68 +0.2
99,097 - EX31_RS09445 0.68 -0.4
99,097 - EX31_RS09445 0.68 -1.2
99,097 - EX31_RS09445 0.68 -1.2
99,126 + EX31_RS09445 0.74 -2.2
99,127 - EX31_RS09445 0.74 -0.1
99,127 - EX31_RS09445 0.74 -1.4
99,259 - -0.2
99,274 - -0.4
99,280 + -1.5
99,282 + -0.5
99,282 + +0.6
99,282 + -0.3
99,283 - +0.5
99,283 - -2.2
99,283 - +0.2
99,283 - -0.8
99,283 - +0.8
99,283 - -0.7
99,283 - +0.1
99,283 - +0.7
99,283 - -0.8
99,283 - +0.7
99,283 - +0.4
99,290 - +0.6
99,290 - +0.7
99,290 - +0.6
99,349 - +0.3
99,374 - +0.2
99,374 - -1.3
99,374 - +0.0
99,438 - EX31_RS09450 0.17 +0.0
99,438 - EX31_RS09450 0.17 +0.8
99,438 - EX31_RS09450 0.17 -1.1
99,438 - EX31_RS09450 0.17 +0.2
99,445 - EX31_RS09450 0.18 +0.3
99,445 - EX31_RS09450 0.18 -0.4
99,445 - EX31_RS09450 0.18 -0.5
99,445 - EX31_RS09450 0.18 +0.5
99,445 - EX31_RS09450 0.18 -0.2
99,448 + EX31_RS09450 0.19 -0.2
99,449 - EX31_RS09450 0.19 +0.2
99,449 - EX31_RS09450 0.19 +0.1
99,449 - EX31_RS09450 0.19 -0.1
99,449 - EX31_RS09450 0.19 +0.4
99,449 - EX31_RS09450 0.19 -0.1
99,508 - EX31_RS09450 0.27 -0.3
99,508 - EX31_RS09450 0.27 +0.6
99,508 - EX31_RS09450 0.27 +0.5
99,527 - EX31_RS09450 0.30 -0.3
99,527 - EX31_RS09450 0.30 +0.5
99,599 + EX31_RS09450 0.40 +1.2
99,615 + EX31_RS09450 0.42 -0.4
99,616 - EX31_RS09450 0.42 -0.8
99,624 + EX31_RS09450 0.43 -0.7
99,632 - EX31_RS09450 0.44 -1.4
99,632 - EX31_RS09450 0.44 -0.2
99,635 - EX31_RS09450 0.45 +0.9
99,635 - EX31_RS09450 0.45 -0.2
99,635 - EX31_RS09450 0.45 +0.6
99,751 - EX31_RS09450 0.61 +0.8
99,751 - EX31_RS09450 0.61 +0.8
99,813 + EX31_RS09450 0.69 -0.1
99,827 + EX31_RS09450 0.71 +0.2
99,828 - EX31_RS09450 0.71 +0.4
99,828 - EX31_RS09450 0.71 +0.1
99,828 - EX31_RS09450 0.71 -0.2
99,877 + EX31_RS09450 0.78 +0.9
99,878 - EX31_RS09450 0.78 -0.6
99,905 - EX31_RS09450 0.82 +0.5
99,905 - EX31_RS09450 0.82 -1.1
99,978 - +0.1
99,978 - -0.3
100,020 + +0.0
100,023 - -0.5
100,023 - -0.9
100,023 - +0.5
100,023 - -0.2
100,023 - +0.1
100,023 - -0.3
100,042 - +0.4
100,104 + +1.2
100,105 - +0.2
100,134 - -1.2
100,134 - -0.6
100,225 - -1.1
100,247 - -0.6
100,247 - +0.5
100,247 - -0.5
100,247 - -0.5

Or see this region's nucleotide sequence