Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09130 and EX31_RS09135 are separated by 104 nucleotides EX31_RS09135 and EX31_RS09140 are separated by 42 nucleotides
EX31_RS09130: EX31_RS09130 - ANTAR domain-containing protein, at 19,232 to 20,449
_RS09130
EX31_RS09135: EX31_RS09135 - MFS transporter, at 20,554 to 20,898
_RS09135
EX31_RS09140: EX31_RS09140 - cellulase family glycosylhydrolase, at 20,941 to 22,020
_RS09140
Position (kb) 20
21 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 19.964 kb on - strand, within EX31_RS09130 at 19.977 kb on - strand, within EX31_RS09130 at 20.297 kb on + strand, within EX31_RS09130 at 20.297 kb on + strand, within EX31_RS09130 at 20.298 kb on - strand, within EX31_RS09130 at 20.298 kb on - strand, within EX31_RS09130 at 20.298 kb on - strand, within EX31_RS09130 at 20.298 kb on - strand, within EX31_RS09130 at 20.301 kb on + strand, within EX31_RS09130 at 20.301 kb on + strand, within EX31_RS09130 at 20.301 kb on + strand, within EX31_RS09130 at 20.301 kb on + strand, within EX31_RS09130 at 20.301 kb on + strand, within EX31_RS09130 at 20.302 kb on - strand, within EX31_RS09130 at 20.302 kb on - strand, within EX31_RS09130 at 20.302 kb on - strand, within EX31_RS09130 at 20.302 kb on - strand, within EX31_RS09130 at 20.302 kb on - strand, within EX31_RS09130 at 20.431 kb on + strand at 20.462 kb on + strand at 20.463 kb on - strand at 20.512 kb on - strand at 20.558 kb on + strand at 20.558 kb on + strand at 20.558 kb on + strand at 20.558 kb on + strand at 20.558 kb on + strand at 20.559 kb on - strand at 20.559 kb on - strand at 20.559 kb on - strand at 20.559 kb on - strand at 20.559 kb on - strand at 20.559 kb on - strand at 20.559 kb on - strand at 20.604 kb on + strand, within EX31_RS09135 at 20.607 kb on + strand, within EX31_RS09135 at 20.609 kb on + strand, within EX31_RS09135 at 20.625 kb on + strand, within EX31_RS09135 at 20.650 kb on - strand, within EX31_RS09135 at 20.650 kb on - strand, within EX31_RS09135 at 20.746 kb on + strand, within EX31_RS09135 at 20.747 kb on - strand, within EX31_RS09135 at 20.790 kb on - strand, within EX31_RS09135 at 20.795 kb on + strand, within EX31_RS09135 at 20.796 kb on - strand, within EX31_RS09135 at 20.796 kb on - strand, within EX31_RS09135 at 20.796 kb on - strand, within EX31_RS09135 at 20.796 kb on - strand, within EX31_RS09135 at 20.803 kb on - strand, within EX31_RS09135 at 20.856 kb on - strand, within EX31_RS09135 at 20.902 kb on - strand at 20.942 kb on + strand at 20.942 kb on + strand at 21.029 kb on - strand at 21.160 kb on + strand, within EX31_RS09140 at 21.193 kb on - strand, within EX31_RS09140 at 21.421 kb on - strand, within EX31_RS09140 at 21.421 kb on - strand, within EX31_RS09140 at 21.421 kb on - strand, within EX31_RS09140 at 21.421 kb on - strand, within EX31_RS09140 at 21.461 kb on + strand, within EX31_RS09140 at 21.462 kb on - strand, within EX31_RS09140 at 21.515 kb on + strand, within EX31_RS09140 at 21.516 kb on - strand, within EX31_RS09140 at 21.576 kb on - strand, within EX31_RS09140 at 21.606 kb on + strand, within EX31_RS09140 at 21.648 kb on + strand, within EX31_RS09140 at 21.648 kb on + strand, within EX31_RS09140 at 21.649 kb on - strand, within EX31_RS09140 at 21.760 kb on - strand, within EX31_RS09140
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 19,964 - EX31_RS09130 0.60 +1.2 19,977 - EX31_RS09130 0.61 +0.5 20,297 + EX31_RS09130 0.87 -1.7 20,297 + EX31_RS09130 0.87 +0.8 20,298 - EX31_RS09130 0.88 -0.2 20,298 - EX31_RS09130 0.88 -2.8 20,298 - EX31_RS09130 0.88 +0.7 20,298 - EX31_RS09130 0.88 +0.5 20,301 + EX31_RS09130 0.88 +0.6 20,301 + EX31_RS09130 0.88 -1.4 20,301 + EX31_RS09130 0.88 -1.7 20,301 + EX31_RS09130 0.88 -2.4 20,301 + EX31_RS09130 0.88 +0.3 20,302 - EX31_RS09130 0.88 -0.4 20,302 - EX31_RS09130 0.88 -0.2 20,302 - EX31_RS09130 0.88 +0.4 20,302 - EX31_RS09130 0.88 +0.6 20,302 - EX31_RS09130 0.88 -1.7 20,431 + -0.7 20,462 + -0.4 20,463 - +1.2 20,512 - -0.9 20,558 + -0.4 20,558 + -0.5 20,558 + +0.4 20,558 + +0.2 20,558 + -0.7 20,559 - -1.1 20,559 - +1.3 20,559 - +1.3 20,559 - -0.9 20,559 - -0.9 20,559 - +0.1 20,559 - -0.0 20,604 + EX31_RS09135 0.14 -0.2 20,607 + EX31_RS09135 0.15 -1.0 20,609 + EX31_RS09135 0.16 -1.5 20,625 + EX31_RS09135 0.21 -0.7 20,650 - EX31_RS09135 0.28 -1.2 20,650 - EX31_RS09135 0.28 +0.7 20,746 + EX31_RS09135 0.56 -0.8 20,747 - EX31_RS09135 0.56 +0.0 20,790 - EX31_RS09135 0.68 -1.3 20,795 + EX31_RS09135 0.70 -1.5 20,796 - EX31_RS09135 0.70 -1.3 20,796 - EX31_RS09135 0.70 -0.3 20,796 - EX31_RS09135 0.70 -0.2 20,796 - EX31_RS09135 0.70 -1.4 20,803 - EX31_RS09135 0.72 +0.1 20,856 - EX31_RS09135 0.88 +0.5 20,902 - -2.7 20,942 + +0.8 20,942 + -1.3 21,029 - -0.7 21,160 + EX31_RS09140 0.20 -1.6 21,193 - EX31_RS09140 0.23 -1.2 21,421 - EX31_RS09140 0.44 +0.1 21,421 - EX31_RS09140 0.44 +0.4 21,421 - EX31_RS09140 0.44 -2.0 21,421 - EX31_RS09140 0.44 -0.2 21,461 + EX31_RS09140 0.48 -0.3 21,462 - EX31_RS09140 0.48 +1.0 21,515 + EX31_RS09140 0.53 +0.3 21,516 - EX31_RS09140 0.53 +3.1 21,576 - EX31_RS09140 0.59 +0.5 21,606 + EX31_RS09140 0.62 +0.8 21,648 + EX31_RS09140 0.65 -0.8 21,648 + EX31_RS09140 0.65 +1.3 21,649 - EX31_RS09140 0.66 +0.9 21,760 - EX31_RS09140 0.76 +0.6
Or see this region's nucleotide sequence