Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09080 and EX31_RS09085 are separated by 114 nucleotides EX31_RS09085 and EX31_RS09095 are separated by 175 nucleotides EX31_RS09095 and EX31_RS09100 are separated by 285 nucleotides
EX31_RS09080: EX31_RS09080 - LysR family transcriptional regulator, at 5,831 to 6,772
_RS09080
EX31_RS09085: EX31_RS09085 - hypothetical protein, at 6,887 to 7,208
_RS09085
EX31_RS09095: EX31_RS09095 - GNAT family N-acetyltransferase, at 7,384 to 7,917
_RS09095
EX31_RS09100: EX31_RS09100 - uroporphyrinogen-III C-methyltransferase, at 8,203 to 9,090
_RS09100
Position (kb) 7
8 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 6.575 kb on - strand, within EX31_RS09080 at 6.637 kb on - strand, within EX31_RS09080 at 6.658 kb on - strand, within EX31_RS09080 at 6.690 kb on - strand at 6.790 kb on + strand at 6.790 kb on + strand at 6.834 kb on + strand at 6.834 kb on + strand at 6.835 kb on - strand at 6.835 kb on - strand at 6.849 kb on - strand at 6.881 kb on + strand at 6.882 kb on - strand at 6.882 kb on - strand at 6.883 kb on + strand at 6.883 kb on + strand at 6.883 kb on + strand at 6.950 kb on - strand, within EX31_RS09085 at 6.950 kb on - strand, within EX31_RS09085 at 6.950 kb on - strand, within EX31_RS09085 at 6.996 kb on - strand, within EX31_RS09085 at 6.997 kb on + strand, within EX31_RS09085 at 6.997 kb on + strand, within EX31_RS09085 at 7.033 kb on + strand, within EX31_RS09085 at 7.034 kb on - strand, within EX31_RS09085 at 7.034 kb on - strand, within EX31_RS09085 at 7.042 kb on + strand, within EX31_RS09085 at 7.042 kb on + strand, within EX31_RS09085 at 7.043 kb on - strand, within EX31_RS09085 at 7.043 kb on - strand, within EX31_RS09085 at 7.065 kb on - strand, within EX31_RS09085 at 7.120 kb on + strand, within EX31_RS09085 at 7.121 kb on - strand, within EX31_RS09085 at 7.121 kb on - strand, within EX31_RS09085 at 7.132 kb on + strand, within EX31_RS09085 at 7.132 kb on + strand, within EX31_RS09085 at 7.132 kb on + strand, within EX31_RS09085 at 7.132 kb on + strand, within EX31_RS09085 at 7.133 kb on - strand, within EX31_RS09085 at 7.133 kb on - strand, within EX31_RS09085 at 7.133 kb on - strand, within EX31_RS09085 at 7.133 kb on - strand, within EX31_RS09085 at 7.148 kb on - strand, within EX31_RS09085 at 7.166 kb on - strand, within EX31_RS09085 at 7.183 kb on + strand at 7.184 kb on - strand at 7.184 kb on - strand at 7.295 kb on + strand at 7.295 kb on + strand at 7.295 kb on + strand at 7.295 kb on + strand at 7.384 kb on - strand at 7.429 kb on + strand at 7.619 kb on + strand, within EX31_RS09095 at 7.661 kb on - strand, within EX31_RS09095 at 7.786 kb on + strand, within EX31_RS09095 at 7.786 kb on + strand, within EX31_RS09095 at 7.786 kb on + strand, within EX31_RS09095 at 7.849 kb on + strand, within EX31_RS09095 at 7.850 kb on - strand, within EX31_RS09095 at 7.850 kb on - strand, within EX31_RS09095 at 7.850 kb on - strand, within EX31_RS09095 at 8.002 kb on + strand at 8.180 kb on - strand at 8.180 kb on - strand at 8.504 kb on + strand, within EX31_RS09100 at 8.504 kb on + strand, within EX31_RS09100 at 8.505 kb on - strand, within EX31_RS09100 at 8.505 kb on - strand, within EX31_RS09100 at 8.505 kb on - strand, within EX31_RS09100 at 8.626 kb on - strand, within EX31_RS09100 at 8.683 kb on + strand, within EX31_RS09100
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 6,575 - EX31_RS09080 0.79 -0.4 6,637 - EX31_RS09080 0.86 -0.0 6,658 - EX31_RS09080 0.88 +0.2 6,690 - -1.0 6,790 + -0.6 6,790 + +1.0 6,834 + -1.2 6,834 + +1.1 6,835 - +0.2 6,835 - -0.6 6,849 - -0.4 6,881 + +0.1 6,882 - -0.6 6,882 - -0.5 6,883 + -0.2 6,883 + +0.1 6,883 + +0.3 6,950 - EX31_RS09085 0.20 -0.4 6,950 - EX31_RS09085 0.20 +0.5 6,950 - EX31_RS09085 0.20 -0.2 6,996 - EX31_RS09085 0.34 -0.8 6,997 + EX31_RS09085 0.34 +0.7 6,997 + EX31_RS09085 0.34 +1.9 7,033 + EX31_RS09085 0.45 -1.1 7,034 - EX31_RS09085 0.46 +1.1 7,034 - EX31_RS09085 0.46 -0.0 7,042 + EX31_RS09085 0.48 +0.9 7,042 + EX31_RS09085 0.48 -1.1 7,043 - EX31_RS09085 0.48 -0.1 7,043 - EX31_RS09085 0.48 +0.4 7,065 - EX31_RS09085 0.55 -1.7 7,120 + EX31_RS09085 0.72 +0.3 7,121 - EX31_RS09085 0.73 -0.4 7,121 - EX31_RS09085 0.73 -0.9 7,132 + EX31_RS09085 0.76 +0.6 7,132 + EX31_RS09085 0.76 -0.1 7,132 + EX31_RS09085 0.76 +1.2 7,132 + EX31_RS09085 0.76 +1.2 7,133 - EX31_RS09085 0.76 -2.7 7,133 - EX31_RS09085 0.76 -0.3 7,133 - EX31_RS09085 0.76 -2.1 7,133 - EX31_RS09085 0.76 +1.7 7,148 - EX31_RS09085 0.81 +0.3 7,166 - EX31_RS09085 0.87 -0.6 7,183 + +1.3 7,184 - +1.3 7,184 - +0.4 7,295 + -1.0 7,295 + -0.4 7,295 + +1.2 7,295 + +0.6 7,384 - -0.9 7,429 + +1.1 7,619 + EX31_RS09095 0.44 -1.4 7,661 - EX31_RS09095 0.52 -1.4 7,786 + EX31_RS09095 0.75 +1.0 7,786 + EX31_RS09095 0.75 -1.1 7,786 + EX31_RS09095 0.75 -4.1 7,849 + EX31_RS09095 0.87 -0.0 7,850 - EX31_RS09095 0.87 -1.9 7,850 - EX31_RS09095 0.87 -0.4 7,850 - EX31_RS09095 0.87 -0.5 8,002 + +0.4 8,180 - -1.7 8,180 - +0.7 8,504 + EX31_RS09100 0.34 +1.1 8,504 + EX31_RS09100 0.34 -1.5 8,505 - EX31_RS09100 0.34 +0.5 8,505 - EX31_RS09100 0.34 +1.1 8,505 - EX31_RS09100 0.34 +1.3 8,626 - EX31_RS09100 0.48 -3.3 8,683 + EX31_RS09100 0.54 -0.1
Or see this region's nucleotide sequence