Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07965 and EX31_RS07970 are separated by 47 nucleotides EX31_RS07970 and EX31_RS07975 are separated by 117 nucleotides
EX31_RS07965: EX31_RS07965 - two-component sensor histidine kinase BarA, at 79,639 to 82,389
_RS07965
EX31_RS07970: EX31_RS07970 - amino acid deaminase, at 82,437 to 83,744
_RS07970
EX31_RS07975: EX31_RS07975 - glycerate kinase, at 83,862 to 85,001
_RS07975
Position (kb) 82
83
84 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 81.575 kb on + strand, within EX31_RS07965 at 81.575 kb on + strand, within EX31_RS07965 at 81.575 kb on + strand, within EX31_RS07965 at 81.575 kb on + strand, within EX31_RS07965 at 81.575 kb on + strand, within EX31_RS07965 at 81.575 kb on + strand, within EX31_RS07965 at 81.575 kb on + strand, within EX31_RS07965 at 81.575 kb on + strand, within EX31_RS07965 at 81.575 kb on + strand, within EX31_RS07965 at 81.576 kb on - strand, within EX31_RS07965 at 81.576 kb on - strand, within EX31_RS07965 at 81.576 kb on - strand, within EX31_RS07965 at 81.621 kb on + strand, within EX31_RS07965 at 81.621 kb on + strand, within EX31_RS07965 at 81.622 kb on - strand, within EX31_RS07965 at 81.766 kb on - strand, within EX31_RS07965 at 81.780 kb on + strand, within EX31_RS07965 at 81.780 kb on + strand, within EX31_RS07965 at 81.937 kb on + strand, within EX31_RS07965 at 81.937 kb on + strand, within EX31_RS07965 at 81.937 kb on + strand, within EX31_RS07965 at 81.937 kb on + strand, within EX31_RS07965 at 81.937 kb on + strand, within EX31_RS07965 at 81.937 kb on + strand, within EX31_RS07965 at 81.938 kb on - strand, within EX31_RS07965 at 81.938 kb on - strand, within EX31_RS07965 at 81.946 kb on - strand, within EX31_RS07965 at 82.092 kb on + strand, within EX31_RS07965 at 82.234 kb on + strand at 82.234 kb on + strand at 82.270 kb on + strand at 82.270 kb on + strand at 82.270 kb on + strand at 82.271 kb on - strand at 82.271 kb on - strand at 82.375 kb on + strand at 82.375 kb on + strand at 82.375 kb on + strand at 82.375 kb on + strand at 82.375 kb on + strand at 82.375 kb on + strand at 82.375 kb on + strand at 82.375 kb on + strand at 82.375 kb on + strand at 82.375 kb on + strand at 82.375 kb on + strand at 82.376 kb on - strand at 82.380 kb on - strand at 82.387 kb on + strand at 82.388 kb on - strand at 82.388 kb on - strand at 82.388 kb on - strand at 82.388 kb on - strand at 82.403 kb on + strand at 82.491 kb on + strand at 82.491 kb on + strand at 82.491 kb on + strand at 82.492 kb on - strand at 82.533 kb on - strand at 82.586 kb on + strand, within EX31_RS07970 at 82.586 kb on + strand, within EX31_RS07970 at 82.587 kb on - strand, within EX31_RS07970 at 82.587 kb on - strand, within EX31_RS07970 at 82.714 kb on + strand, within EX31_RS07970 at 82.742 kb on + strand, within EX31_RS07970 at 82.892 kb on - strand, within EX31_RS07970 at 82.924 kb on + strand, within EX31_RS07970 at 82.924 kb on + strand, within EX31_RS07970 at 82.925 kb on - strand, within EX31_RS07970 at 82.925 kb on - strand, within EX31_RS07970 at 83.058 kb on - strand, within EX31_RS07970 at 83.119 kb on + strand, within EX31_RS07970 at 83.176 kb on - strand, within EX31_RS07970 at 83.205 kb on - strand, within EX31_RS07970 at 83.230 kb on + strand, within EX31_RS07970 at 83.492 kb on - strand, within EX31_RS07970 at 83.492 kb on - strand, within EX31_RS07970 at 83.492 kb on - strand, within EX31_RS07970 at 83.552 kb on + strand, within EX31_RS07970 at 83.552 kb on + strand, within EX31_RS07970 at 83.636 kb on + strand at 83.708 kb on + strand at 83.708 kb on + strand at 83.709 kb on - strand at 83.709 kb on - strand at 83.711 kb on + strand at 83.744 kb on + strand at 83.744 kb on + strand at 83.744 kb on + strand at 83.744 kb on + strand at 83.744 kb on + strand at 83.744 kb on + strand at 83.744 kb on + strand at 83.745 kb on - strand at 83.745 kb on - strand at 83.745 kb on - strand at 83.745 kb on - strand at 83.745 kb on - strand at 83.745 kb on - strand at 83.745 kb on - strand at 83.745 kb on - strand at 83.745 kb on - strand at 83.745 kb on - strand at 83.745 kb on - strand at 83.745 kb on - strand at 83.779 kb on + strand at 83.784 kb on + strand at 83.785 kb on - strand at 83.785 kb on - strand at 83.799 kb on + strand at 83.800 kb on - strand at 83.800 kb on - strand at 83.842 kb on + strand at 83.842 kb on + strand at 83.842 kb on + strand at 83.842 kb on + strand at 83.843 kb on - strand at 83.843 kb on - strand at 83.843 kb on - strand at 83.845 kb on - strand at 83.878 kb on - strand at 83.882 kb on + strand at 83.882 kb on + strand at 83.882 kb on + strand at 83.882 kb on + strand at 83.883 kb on - strand at 83.883 kb on - strand at 83.883 kb on - strand at 83.883 kb on - strand at 83.883 kb on - strand at 83.883 kb on - strand at 83.883 kb on - strand at 83.883 kb on - strand at 83.883 kb on - strand at 83.885 kb on + strand at 83.886 kb on - strand at 83.886 kb on - strand at 83.897 kb on + strand at 83.913 kb on - strand at 83.913 kb on - strand at 83.954 kb on + strand at 83.954 kb on + strand at 83.955 kb on - strand at 83.955 kb on - strand at 83.965 kb on + strand at 83.966 kb on - strand at 84.058 kb on + strand, within EX31_RS07975 at 84.058 kb on + strand, within EX31_RS07975 at 84.059 kb on - strand, within EX31_RS07975 at 84.065 kb on + strand, within EX31_RS07975 at 84.066 kb on - strand, within EX31_RS07975 at 84.135 kb on - strand, within EX31_RS07975 at 84.229 kb on + strand, within EX31_RS07975 at 84.328 kb on + strand, within EX31_RS07975 at 84.452 kb on + strand, within EX31_RS07975 at 84.477 kb on - strand, within EX31_RS07975 at 84.521 kb on + strand, within EX31_RS07975 at 84.521 kb on + strand, within EX31_RS07975 at 84.522 kb on - strand, within EX31_RS07975 at 84.522 kb on - strand, within EX31_RS07975 at 84.624 kb on + strand, within EX31_RS07975 at 84.667 kb on + strand, within EX31_RS07975 at 84.667 kb on + strand, within EX31_RS07975 at 84.667 kb on + strand, within EX31_RS07975 at 84.667 kb on + strand, within EX31_RS07975 at 84.667 kb on + strand, within EX31_RS07975 at 84.667 kb on + strand, within EX31_RS07975 at 84.668 kb on - strand, within EX31_RS07975 at 84.668 kb on - strand, within EX31_RS07975 at 84.668 kb on - strand, within EX31_RS07975 at 84.668 kb on - strand, within EX31_RS07975 at 84.668 kb on - strand, within EX31_RS07975 at 84.668 kb on - strand, within EX31_RS07975 at 84.689 kb on + strand, within EX31_RS07975 at 84.690 kb on - strand, within EX31_RS07975
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 81,575 + EX31_RS07965 0.70 +0.1 81,575 + EX31_RS07965 0.70 +0.7 81,575 + EX31_RS07965 0.70 -0.0 81,575 + EX31_RS07965 0.70 -0.6 81,575 + EX31_RS07965 0.70 +0.0 81,575 + EX31_RS07965 0.70 +0.0 81,575 + EX31_RS07965 0.70 +0.2 81,575 + EX31_RS07965 0.70 +0.1 81,575 + EX31_RS07965 0.70 -0.3 81,576 - EX31_RS07965 0.70 -0.3 81,576 - EX31_RS07965 0.70 +0.5 81,576 - EX31_RS07965 0.70 +0.6 81,621 + EX31_RS07965 0.72 -1.4 81,621 + EX31_RS07965 0.72 +0.9 81,622 - EX31_RS07965 0.72 +0.6 81,766 - EX31_RS07965 0.77 +0.2 81,780 + EX31_RS07965 0.78 -0.4 81,780 + EX31_RS07965 0.78 -1.0 81,937 + EX31_RS07965 0.84 -0.0 81,937 + EX31_RS07965 0.84 -0.1 81,937 + EX31_RS07965 0.84 +0.5 81,937 + EX31_RS07965 0.84 +0.5 81,937 + EX31_RS07965 0.84 +0.3 81,937 + EX31_RS07965 0.84 -0.5 81,938 - EX31_RS07965 0.84 +0.5 81,938 - EX31_RS07965 0.84 -0.3 81,946 - EX31_RS07965 0.84 -1.9 82,092 + EX31_RS07965 0.89 -0.1 82,234 + +0.5 82,234 + +0.1 82,270 + +0.7 82,270 + +0.6 82,270 + +1.0 82,271 - +0.4 82,271 - +0.3 82,375 + -0.1 82,375 + -0.7 82,375 + -0.6 82,375 + -0.9 82,375 + +0.1 82,375 + +0.5 82,375 + +0.1 82,375 + +0.2 82,375 + +0.4 82,375 + +0.5 82,375 + -0.2 82,376 - +1.5 82,380 - +1.0 82,387 + +0.3 82,388 - +0.3 82,388 - +0.6 82,388 - +1.1 82,388 - +0.1 82,403 + +0.7 82,491 + +2.0 82,491 + -2.1 82,491 + -0.9 82,492 - +0.7 82,533 - +0.4 82,586 + EX31_RS07970 0.11 +1.4 82,586 + EX31_RS07970 0.11 +0.4 82,587 - EX31_RS07970 0.11 +0.7 82,587 - EX31_RS07970 0.11 +0.8 82,714 + EX31_RS07970 0.21 -3.0 82,742 + EX31_RS07970 0.23 +1.1 82,892 - EX31_RS07970 0.35 +1.6 82,924 + EX31_RS07970 0.37 -0.6 82,924 + EX31_RS07970 0.37 -0.3 82,925 - EX31_RS07970 0.37 -0.2 82,925 - EX31_RS07970 0.37 +0.4 83,058 - EX31_RS07970 0.47 -2.4 83,119 + EX31_RS07970 0.52 -0.9 83,176 - EX31_RS07970 0.56 +0.0 83,205 - EX31_RS07970 0.59 +1.1 83,230 + EX31_RS07970 0.61 +0.0 83,492 - EX31_RS07970 0.81 -0.0 83,492 - EX31_RS07970 0.81 -0.1 83,492 - EX31_RS07970 0.81 +0.1 83,552 + EX31_RS07970 0.85 +0.1 83,552 + EX31_RS07970 0.85 -0.4 83,636 + +0.7 83,708 + +0.5 83,708 + +0.6 83,709 - +0.2 83,709 - +0.8 83,711 + -0.3 83,744 + +1.2 83,744 + -2.2 83,744 + -0.4 83,744 + +0.7 83,744 + -1.1 83,744 + +1.1 83,744 + -0.9 83,745 - +0.2 83,745 - +0.1 83,745 - -0.3 83,745 - +0.4 83,745 - -1.3 83,745 - -1.2 83,745 - +0.3 83,745 - +0.1 83,745 - +0.2 83,745 - -0.4 83,745 - +0.0 83,745 - +0.9 83,779 + +0.7 83,784 + +0.7 83,785 - +0.3 83,785 - -0.5 83,799 + -0.0 83,800 - +0.5 83,800 - +0.2 83,842 + +0.4 83,842 + -0.4 83,842 + -0.3 83,842 + +0.8 83,843 - +0.5 83,843 - +1.0 83,843 - -0.3 83,845 - -0.3 83,878 - -0.5 83,882 + +0.5 83,882 + +0.3 83,882 + +0.9 83,882 + +0.2 83,883 - +0.4 83,883 - +0.4 83,883 - +0.0 83,883 - +0.4 83,883 - +0.2 83,883 - -0.6 83,883 - +0.1 83,883 - +0.6 83,883 - -0.3 83,885 + -0.2 83,886 - -0.1 83,886 - -0.4 83,897 + -0.5 83,913 - +1.2 83,913 - -0.4 83,954 + -0.1 83,954 + +0.1 83,955 - -0.0 83,955 - -0.2 83,965 + +0.1 83,966 - +0.3 84,058 + EX31_RS07975 0.17 -1.1 84,058 + EX31_RS07975 0.17 +0.2 84,059 - EX31_RS07975 0.17 +0.3 84,065 + EX31_RS07975 0.18 -1.2 84,066 - EX31_RS07975 0.18 +0.9 84,135 - EX31_RS07975 0.24 +0.4 84,229 + EX31_RS07975 0.32 +0.9 84,328 + EX31_RS07975 0.41 +0.9 84,452 + EX31_RS07975 0.52 -1.1 84,477 - EX31_RS07975 0.54 +0.3 84,521 + EX31_RS07975 0.58 -0.1 84,521 + EX31_RS07975 0.58 +0.3 84,522 - EX31_RS07975 0.58 -0.1 84,522 - EX31_RS07975 0.58 -0.1 84,624 + EX31_RS07975 0.67 -0.4 84,667 + EX31_RS07975 0.71 -0.2 84,667 + EX31_RS07975 0.71 +0.5 84,667 + EX31_RS07975 0.71 -0.3 84,667 + EX31_RS07975 0.71 +1.3 84,667 + EX31_RS07975 0.71 -1.8 84,667 + EX31_RS07975 0.71 +0.6 84,668 - EX31_RS07975 0.71 -0.6 84,668 - EX31_RS07975 0.71 -1.3 84,668 - EX31_RS07975 0.71 -0.5 84,668 - EX31_RS07975 0.71 +0.2 84,668 - EX31_RS07975 0.71 -0.4 84,668 - EX31_RS07975 0.71 +0.3 84,689 + EX31_RS07975 0.73 +0.7 84,690 - EX31_RS07975 0.73 -1.3
Or see this region's nucleotide sequence