Strain Fitness in Rahnella sp. WP5 around EX31_RS07280

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS07275 and EX31_RS07280 are separated by 22 nucleotidesEX31_RS07280 and EX31_RS07285 are separated by 883 nucleotides EX31_RS07275: EX31_RS07275 - GMC family oxidoreductase, at 256,006 to 257,610 _RS07275 EX31_RS07280: EX31_RS07280 - cytochrome c, at 257,633 to 258,955 _RS07280 EX31_RS07285: EX31_RS07285 - GNAT family N-acetyltransferase, at 259,839 to 260,546 _RS07285 Position (kb) 257 258 259Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 256.635 kb on + strand, within EX31_RS07275at 256.635 kb on + strand, within EX31_RS07275at 256.636 kb on - strand, within EX31_RS07275at 256.641 kb on + strand, within EX31_RS07275at 256.641 kb on + strand, within EX31_RS07275at 256.642 kb on - strand, within EX31_RS07275at 256.738 kb on + strand, within EX31_RS07275at 256.888 kb on - strand, within EX31_RS07275at 256.988 kb on - strand, within EX31_RS07275at 257.020 kb on - strand, within EX31_RS07275at 257.067 kb on - strand, within EX31_RS07275at 257.070 kb on + strand, within EX31_RS07275at 257.070 kb on + strand, within EX31_RS07275at 257.071 kb on - strand, within EX31_RS07275at 257.131 kb on + strand, within EX31_RS07275at 257.182 kb on - strand, within EX31_RS07275at 257.302 kb on + strand, within EX31_RS07275at 257.380 kb on + strand, within EX31_RS07275at 257.380 kb on + strand, within EX31_RS07275at 257.398 kb on + strand, within EX31_RS07275at 257.399 kb on - strand, within EX31_RS07275at 257.415 kb on + strand, within EX31_RS07275at 257.415 kb on + strand, within EX31_RS07275at 257.415 kb on + strand, within EX31_RS07275at 257.416 kb on - strand, within EX31_RS07275at 257.416 kb on - strand, within EX31_RS07275at 257.520 kb on + strandat 257.586 kb on + strandat 257.586 kb on + strandat 257.725 kb on + strandat 257.761 kb on + strandat 257.773 kb on + strand, within EX31_RS07280at 258.021 kb on - strand, within EX31_RS07280at 258.291 kb on + strand, within EX31_RS07280at 258.360 kb on - strand, within EX31_RS07280at 258.473 kb on + strand, within EX31_RS07280at 258.473 kb on + strand, within EX31_RS07280at 258.473 kb on + strand, within EX31_RS07280at 258.473 kb on + strand, within EX31_RS07280at 258.473 kb on + strand, within EX31_RS07280at 258.473 kb on + strand, within EX31_RS07280at 258.474 kb on - strand, within EX31_RS07280at 258.474 kb on - strand, within EX31_RS07280at 258.550 kb on + strand, within EX31_RS07280at 258.555 kb on - strand, within EX31_RS07280at 258.707 kb on + strand, within EX31_RS07280at 258.707 kb on + strand, within EX31_RS07280at 258.826 kb on - strandat 258.826 kb on - strandat 258.833 kb on + strandat 258.834 kb on - strandat 258.901 kb on + strandat 259.018 kb on + strandat 259.022 kb on + strandat 259.078 kb on - strandat 259.205 kb on - strandat 259.837 kb on + strandat 259.919 kb on + strand, within EX31_RS07285at 259.921 kb on + strand, within EX31_RS07285

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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256,635 + EX31_RS07275 0.39 +0.7
256,635 + EX31_RS07275 0.39 -1.2
256,636 - EX31_RS07275 0.39 -1.6
256,641 + EX31_RS07275 0.40 +0.4
256,641 + EX31_RS07275 0.40 -1.0
256,642 - EX31_RS07275 0.40 -0.4
256,738 + EX31_RS07275 0.46 -0.7
256,888 - EX31_RS07275 0.55 +0.2
256,988 - EX31_RS07275 0.61 -0.3
257,020 - EX31_RS07275 0.63 -0.9
257,067 - EX31_RS07275 0.66 +0.7
257,070 + EX31_RS07275 0.66 -2.8
257,070 + EX31_RS07275 0.66 -0.5
257,071 - EX31_RS07275 0.66 -0.5
257,131 + EX31_RS07275 0.70 -0.2
257,182 - EX31_RS07275 0.73 +1.3
257,302 + EX31_RS07275 0.81 +0.1
257,380 + EX31_RS07275 0.86 -4.0
257,380 + EX31_RS07275 0.86 -0.0
257,398 + EX31_RS07275 0.87 -1.4
257,399 - EX31_RS07275 0.87 -0.1
257,415 + EX31_RS07275 0.88 +1.0
257,415 + EX31_RS07275 0.88 -0.2
257,415 + EX31_RS07275 0.88 -1.5
257,416 - EX31_RS07275 0.88 +0.0
257,416 - EX31_RS07275 0.88 -1.7
257,520 + -0.7
257,586 + +1.1
257,586 + +0.1
257,725 + +0.2
257,761 + -1.3
257,773 + EX31_RS07280 0.11 -0.6
258,021 - EX31_RS07280 0.29 -0.5
258,291 + EX31_RS07280 0.50 -0.2
258,360 - EX31_RS07280 0.55 -0.1
258,473 + EX31_RS07280 0.63 -2.3
258,473 + EX31_RS07280 0.63 -1.6
258,473 + EX31_RS07280 0.63 -0.9
258,473 + EX31_RS07280 0.63 -0.7
258,473 + EX31_RS07280 0.63 -2.2
258,473 + EX31_RS07280 0.63 -0.3
258,474 - EX31_RS07280 0.64 -0.3
258,474 - EX31_RS07280 0.64 +0.7
258,550 + EX31_RS07280 0.69 +0.3
258,555 - EX31_RS07280 0.70 -2.5
258,707 + EX31_RS07280 0.81 -1.6
258,707 + EX31_RS07280 0.81 +0.6
258,826 - +0.2
258,826 - -1.0
258,833 + -0.8
258,834 - +0.2
258,901 + -0.6
259,018 + +0.2
259,022 + -0.2
259,078 - -1.4
259,205 - -0.8
259,837 + +0.6
259,919 + EX31_RS07285 0.11 +0.3
259,921 + EX31_RS07285 0.12 -0.1

Or see this region's nucleotide sequence