Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07275 and EX31_RS07280 are separated by 22 nucleotides EX31_RS07280 and EX31_RS07285 are separated by 883 nucleotides
EX31_RS07275: EX31_RS07275 - GMC family oxidoreductase, at 256,006 to 257,610
_RS07275
EX31_RS07280: EX31_RS07280 - cytochrome c, at 257,633 to 258,955
_RS07280
EX31_RS07285: EX31_RS07285 - GNAT family N-acetyltransferase, at 259,839 to 260,546
_RS07285
Position (kb)
257
258
259 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 256.635 kb on + strand, within EX31_RS07275 at 256.635 kb on + strand, within EX31_RS07275 at 256.636 kb on - strand, within EX31_RS07275 at 256.641 kb on + strand, within EX31_RS07275 at 256.641 kb on + strand, within EX31_RS07275 at 256.642 kb on - strand, within EX31_RS07275 at 256.738 kb on + strand, within EX31_RS07275 at 256.888 kb on - strand, within EX31_RS07275 at 256.988 kb on - strand, within EX31_RS07275 at 257.020 kb on - strand, within EX31_RS07275 at 257.067 kb on - strand, within EX31_RS07275 at 257.070 kb on + strand, within EX31_RS07275 at 257.070 kb on + strand, within EX31_RS07275 at 257.071 kb on - strand, within EX31_RS07275 at 257.131 kb on + strand, within EX31_RS07275 at 257.182 kb on - strand, within EX31_RS07275 at 257.302 kb on + strand, within EX31_RS07275 at 257.380 kb on + strand, within EX31_RS07275 at 257.380 kb on + strand, within EX31_RS07275 at 257.398 kb on + strand, within EX31_RS07275 at 257.399 kb on - strand, within EX31_RS07275 at 257.415 kb on + strand, within EX31_RS07275 at 257.415 kb on + strand, within EX31_RS07275 at 257.415 kb on + strand, within EX31_RS07275 at 257.416 kb on - strand, within EX31_RS07275 at 257.416 kb on - strand, within EX31_RS07275 at 257.520 kb on + strand at 257.586 kb on + strand at 257.586 kb on + strand at 257.725 kb on + strand at 257.761 kb on + strand at 257.773 kb on + strand, within EX31_RS07280 at 258.021 kb on - strand, within EX31_RS07280 at 258.291 kb on + strand, within EX31_RS07280 at 258.360 kb on - strand, within EX31_RS07280 at 258.473 kb on + strand, within EX31_RS07280 at 258.473 kb on + strand, within EX31_RS07280 at 258.473 kb on + strand, within EX31_RS07280 at 258.473 kb on + strand, within EX31_RS07280 at 258.473 kb on + strand, within EX31_RS07280 at 258.473 kb on + strand, within EX31_RS07280 at 258.474 kb on - strand, within EX31_RS07280 at 258.474 kb on - strand, within EX31_RS07280 at 258.550 kb on + strand, within EX31_RS07280 at 258.555 kb on - strand, within EX31_RS07280 at 258.707 kb on + strand, within EX31_RS07280 at 258.707 kb on + strand, within EX31_RS07280 at 258.826 kb on - strand at 258.826 kb on - strand at 258.833 kb on + strand at 258.834 kb on - strand at 258.901 kb on + strand at 259.018 kb on + strand at 259.022 kb on + strand at 259.078 kb on - strand at 259.205 kb on - strand at 259.837 kb on + strand at 259.919 kb on + strand, within EX31_RS07285 at 259.921 kb on + strand, within EX31_RS07285
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 256,635 + EX31_RS07275 0.39 +0.7 256,635 + EX31_RS07275 0.39 -1.2 256,636 - EX31_RS07275 0.39 -1.6 256,641 + EX31_RS07275 0.40 +0.4 256,641 + EX31_RS07275 0.40 -1.0 256,642 - EX31_RS07275 0.40 -0.4 256,738 + EX31_RS07275 0.46 -0.7 256,888 - EX31_RS07275 0.55 +0.2 256,988 - EX31_RS07275 0.61 -0.3 257,020 - EX31_RS07275 0.63 -0.9 257,067 - EX31_RS07275 0.66 +0.7 257,070 + EX31_RS07275 0.66 -2.8 257,070 + EX31_RS07275 0.66 -0.5 257,071 - EX31_RS07275 0.66 -0.5 257,131 + EX31_RS07275 0.70 -0.2 257,182 - EX31_RS07275 0.73 +1.3 257,302 + EX31_RS07275 0.81 +0.1 257,380 + EX31_RS07275 0.86 -4.0 257,380 + EX31_RS07275 0.86 -0.0 257,398 + EX31_RS07275 0.87 -1.4 257,399 - EX31_RS07275 0.87 -0.1 257,415 + EX31_RS07275 0.88 +1.0 257,415 + EX31_RS07275 0.88 -0.2 257,415 + EX31_RS07275 0.88 -1.5 257,416 - EX31_RS07275 0.88 +0.0 257,416 - EX31_RS07275 0.88 -1.7 257,520 + -0.7 257,586 + +1.1 257,586 + +0.1 257,725 + +0.2 257,761 + -1.3 257,773 + EX31_RS07280 0.11 -0.6 258,021 - EX31_RS07280 0.29 -0.5 258,291 + EX31_RS07280 0.50 -0.2 258,360 - EX31_RS07280 0.55 -0.1 258,473 + EX31_RS07280 0.63 -2.3 258,473 + EX31_RS07280 0.63 -1.6 258,473 + EX31_RS07280 0.63 -0.9 258,473 + EX31_RS07280 0.63 -0.7 258,473 + EX31_RS07280 0.63 -2.2 258,473 + EX31_RS07280 0.63 -0.3 258,474 - EX31_RS07280 0.64 -0.3 258,474 - EX31_RS07280 0.64 +0.7 258,550 + EX31_RS07280 0.69 +0.3 258,555 - EX31_RS07280 0.70 -2.5 258,707 + EX31_RS07280 0.81 -1.6 258,707 + EX31_RS07280 0.81 +0.6 258,826 - +0.2 258,826 - -1.0 258,833 + -0.8 258,834 - +0.2 258,901 + -0.6 259,018 + +0.2 259,022 + -0.2 259,078 - -1.4 259,205 - -0.8 259,837 + +0.6 259,919 + EX31_RS07285 0.11 +0.3 259,921 + EX31_RS07285 0.12 -0.1
Or see this region's nucleotide sequence