Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07220 and EX31_RS07225 are separated by 230 nucleotides EX31_RS07225 and EX31_RS07230 are separated by 250 nucleotides
EX31_RS07220: EX31_RS07220 - DUF1471 domain-containing protein, at 243,010 to 243,963
_RS07220
EX31_RS07225: EX31_RS07225 - membrane dipeptidase, at 244,194 to 245,306
_RS07225
EX31_RS07230: EX31_RS07230 - ABC transporter substrate-binding protein, at 245,557 to 247,152
_RS07230
Position (kb) 244
245
246 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 243.212 kb on - strand, within EX31_RS07220 at 243.241 kb on - strand, within EX31_RS07220 at 243.263 kb on + strand, within EX31_RS07220 at 243.277 kb on + strand, within EX31_RS07220 at 243.277 kb on + strand, within EX31_RS07220 at 243.277 kb on + strand, within EX31_RS07220 at 243.349 kb on - strand, within EX31_RS07220 at 243.435 kb on + strand, within EX31_RS07220 at 243.463 kb on + strand, within EX31_RS07220 at 243.514 kb on + strand, within EX31_RS07220 at 243.514 kb on + strand, within EX31_RS07220 at 243.532 kb on + strand, within EX31_RS07220 at 243.532 kb on + strand, within EX31_RS07220 at 243.534 kb on + strand, within EX31_RS07220 at 243.534 kb on + strand, within EX31_RS07220 at 243.773 kb on + strand, within EX31_RS07220 at 243.776 kb on + strand, within EX31_RS07220 at 243.776 kb on + strand, within EX31_RS07220 at 243.776 kb on + strand, within EX31_RS07220 at 243.892 kb on + strand at 243.892 kb on + strand at 243.941 kb on + strand at 243.961 kb on + strand at 243.961 kb on + strand at 244.145 kb on + strand at 244.208 kb on + strand at 244.410 kb on + strand, within EX31_RS07225 at 244.410 kb on + strand, within EX31_RS07225 at 244.411 kb on - strand, within EX31_RS07225 at 244.411 kb on - strand, within EX31_RS07225 at 244.415 kb on + strand, within EX31_RS07225 at 244.536 kb on - strand, within EX31_RS07225 at 244.536 kb on - strand, within EX31_RS07225 at 244.553 kb on + strand, within EX31_RS07225 at 244.554 kb on - strand, within EX31_RS07225 at 244.804 kb on + strand, within EX31_RS07225 at 244.805 kb on - strand, within EX31_RS07225 at 244.805 kb on - strand, within EX31_RS07225 at 244.856 kb on + strand, within EX31_RS07225 at 244.873 kb on - strand, within EX31_RS07225 at 244.883 kb on + strand, within EX31_RS07225 at 245.085 kb on - strand, within EX31_RS07225 at 245.252 kb on + strand at 245.307 kb on - strand at 245.327 kb on + strand at 245.328 kb on - strand at 245.409 kb on + strand at 245.409 kb on + strand at 245.409 kb on + strand at 245.409 kb on + strand at 245.491 kb on + strand at 245.492 kb on - strand at 245.654 kb on + strand at 245.655 kb on - strand at 245.742 kb on + strand, within EX31_RS07230 at 245.743 kb on - strand, within EX31_RS07230 at 245.746 kb on + strand, within EX31_RS07230 at 245.747 kb on - strand, within EX31_RS07230 at 245.747 kb on - strand, within EX31_RS07230 at 245.951 kb on - strand, within EX31_RS07230 at 245.955 kb on + strand, within EX31_RS07230 at 245.956 kb on - strand, within EX31_RS07230 at 245.956 kb on - strand, within EX31_RS07230 at 245.958 kb on + strand, within EX31_RS07230 at 246.067 kb on + strand, within EX31_RS07230 at 246.094 kb on - strand, within EX31_RS07230 at 246.286 kb on - strand, within EX31_RS07230
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 243,212 - EX31_RS07220 0.21 -2.7 243,241 - EX31_RS07220 0.24 -0.4 243,263 + EX31_RS07220 0.27 +0.1 243,277 + EX31_RS07220 0.28 -0.9 243,277 + EX31_RS07220 0.28 +0.1 243,277 + EX31_RS07220 0.28 -2.4 243,349 - EX31_RS07220 0.36 +0.4 243,435 + EX31_RS07220 0.45 -1.4 243,463 + EX31_RS07220 0.47 +0.7 243,514 + EX31_RS07220 0.53 +1.2 243,514 + EX31_RS07220 0.53 -0.7 243,532 + EX31_RS07220 0.55 -1.0 243,532 + EX31_RS07220 0.55 -1.3 243,534 + EX31_RS07220 0.55 +0.5 243,534 + EX31_RS07220 0.55 +0.7 243,773 + EX31_RS07220 0.80 -0.6 243,776 + EX31_RS07220 0.80 +0.2 243,776 + EX31_RS07220 0.80 -0.2 243,776 + EX31_RS07220 0.80 +0.1 243,892 + -0.9 243,892 + +0.6 243,941 + +1.1 243,961 + -0.1 243,961 + -0.8 244,145 + +0.0 244,208 + +2.3 244,410 + EX31_RS07225 0.19 +1.3 244,410 + EX31_RS07225 0.19 -1.7 244,411 - EX31_RS07225 0.19 -2.0 244,411 - EX31_RS07225 0.19 -1.9 244,415 + EX31_RS07225 0.20 -0.9 244,536 - EX31_RS07225 0.31 +0.5 244,536 - EX31_RS07225 0.31 -1.2 244,553 + EX31_RS07225 0.32 +0.3 244,554 - EX31_RS07225 0.32 -1.2 244,804 + EX31_RS07225 0.55 -1.0 244,805 - EX31_RS07225 0.55 +0.0 244,805 - EX31_RS07225 0.55 -2.5 244,856 + EX31_RS07225 0.59 -0.8 244,873 - EX31_RS07225 0.61 -2.2 244,883 + EX31_RS07225 0.62 +1.4 245,085 - EX31_RS07225 0.80 -0.5 245,252 + -0.6 245,307 - +0.8 245,327 + -2.8 245,328 - +0.2 245,409 + +0.6 245,409 + -0.9 245,409 + -1.6 245,409 + +0.8 245,491 + -2.3 245,492 - -0.5 245,654 + +0.8 245,655 - -0.8 245,742 + EX31_RS07230 0.12 -3.2 245,743 - EX31_RS07230 0.12 +1.3 245,746 + EX31_RS07230 0.12 +0.4 245,747 - EX31_RS07230 0.12 +0.4 245,747 - EX31_RS07230 0.12 +0.9 245,951 - EX31_RS07230 0.25 -0.9 245,955 + EX31_RS07230 0.25 +0.5 245,956 - EX31_RS07230 0.25 -1.0 245,956 - EX31_RS07230 0.25 -0.2 245,958 + EX31_RS07230 0.25 -0.4 246,067 + EX31_RS07230 0.32 +1.2 246,094 - EX31_RS07230 0.34 -0.4 246,286 - EX31_RS07230 0.46 -2.7
Or see this region's nucleotide sequence