Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS07130 and EX31_RS07135 are separated by 182 nucleotides EX31_RS07135 and EX31_RS07140 are separated by 108 nucleotides
EX31_RS07130: EX31_RS07130 - ABC transporter substrate-binding protein, at 218,217 to 219,155
_RS07130
EX31_RS07135: EX31_RS07135 - hypothetical protein, at 219,338 to 219,565
_RS07135
EX31_RS07140: EX31_RS07140 - oxalate/formate MFS antiporter, at 219,674 to 220,933
_RS07140
Position (kb) 219
220 Strain fitness (log2 ratio) -2
-1
0
1
2 at 218.351 kb on + strand, within EX31_RS07130 at 218.352 kb on - strand, within EX31_RS07130 at 218.470 kb on + strand, within EX31_RS07130 at 218.867 kb on + strand, within EX31_RS07130 at 218.874 kb on - strand, within EX31_RS07130 at 218.923 kb on + strand, within EX31_RS07130 at 218.932 kb on - strand, within EX31_RS07130 at 219.153 kb on + strand at 219.292 kb on - strand at 219.295 kb on - strand at 219.434 kb on + strand, within EX31_RS07135 at 219.510 kb on + strand, within EX31_RS07135 at 219.518 kb on + strand, within EX31_RS07135 at 219.661 kb on - strand at 219.672 kb on - strand at 219.773 kb on + strand at 219.773 kb on + strand at 219.774 kb on - strand at 219.774 kb on - strand at 219.774 kb on - strand at 219.802 kb on - strand, within EX31_RS07140 at 219.840 kb on - strand, within EX31_RS07140 at 219.854 kb on - strand, within EX31_RS07140 at 219.854 kb on - strand, within EX31_RS07140 at 219.854 kb on - strand, within EX31_RS07140 at 219.856 kb on - strand, within EX31_RS07140 at 219.856 kb on - strand, within EX31_RS07140 at 219.856 kb on - strand, within EX31_RS07140 at 219.856 kb on - strand, within EX31_RS07140 at 219.856 kb on - strand, within EX31_RS07140 at 219.856 kb on - strand, within EX31_RS07140 at 219.872 kb on - strand, within EX31_RS07140 at 220.418 kb on - strand, within EX31_RS07140 at 220.418 kb on - strand, within EX31_RS07140 at 220.564 kb on - strand, within EX31_RS07140 at 220.564 kb on - strand, within EX31_RS07140
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 218,351 + EX31_RS07130 0.14 +0.3 218,352 - EX31_RS07130 0.14 +0.9 218,470 + EX31_RS07130 0.27 -1.4 218,867 + EX31_RS07130 0.69 -0.7 218,874 - EX31_RS07130 0.70 +0.4 218,923 + EX31_RS07130 0.75 +0.6 218,932 - EX31_RS07130 0.76 +0.2 219,153 + +1.4 219,292 - +0.1 219,295 - -2.0 219,434 + EX31_RS07135 0.42 -2.3 219,510 + EX31_RS07135 0.75 -0.6 219,518 + EX31_RS07135 0.79 -1.1 219,661 - +1.0 219,672 - -0.6 219,773 + -2.2 219,773 + -1.6 219,774 - -0.0 219,774 - -1.1 219,774 - +0.0 219,802 - EX31_RS07140 0.10 +0.8 219,840 - EX31_RS07140 0.13 +0.8 219,854 - EX31_RS07140 0.14 +0.6 219,854 - EX31_RS07140 0.14 -0.4 219,854 - EX31_RS07140 0.14 -0.5 219,856 - EX31_RS07140 0.14 +1.2 219,856 - EX31_RS07140 0.14 +0.5 219,856 - EX31_RS07140 0.14 -1.3 219,856 - EX31_RS07140 0.14 +0.5 219,856 - EX31_RS07140 0.14 -0.0 219,856 - EX31_RS07140 0.14 +2.6 219,872 - EX31_RS07140 0.16 +1.5 220,418 - EX31_RS07140 0.59 +0.4 220,418 - EX31_RS07140 0.59 -0.6 220,564 - EX31_RS07140 0.71 +2.0 220,564 - EX31_RS07140 0.71 +0.4
Or see this region's nucleotide sequence