Strain Fitness in Rahnella sp. WP5 around EX31_RS07025

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS07020 and EX31_RS07025 overlap by 8 nucleotidesEX31_RS07025 and EX31_RS07030 are separated by 115 nucleotidesEX31_RS07030 and EX31_RS07035 overlap by 4 nucleotides EX31_RS07020: EX31_RS07020 - xanthine dehydrogenase molybdopterin binding subunit, at 193,697 to 196,096 _RS07020 EX31_RS07025: EX31_RS07025 - xanthine dehydrogenase small subunit, at 196,089 to 197,492 _RS07025 EX31_RS07030: EX31_RS07030 - TetR family transcriptional regulator, at 197,608 to 198,276 _RS07030 EX31_RS07035: EX31_RS07035 - guanine deaminase, at 198,273 to 199,625 _RS07035 Position (kb) 196 197 198Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 195.113 kb on - strand, within EX31_RS07020at 195.157 kb on + strand, within EX31_RS07020at 195.197 kb on + strand, within EX31_RS07020at 195.197 kb on + strand, within EX31_RS07020at 195.205 kb on - strand, within EX31_RS07020at 195.205 kb on - strand, within EX31_RS07020at 195.371 kb on - strand, within EX31_RS07020at 195.453 kb on + strand, within EX31_RS07020at 195.453 kb on + strand, within EX31_RS07020at 195.454 kb on - strand, within EX31_RS07020at 195.454 kb on - strand, within EX31_RS07020at 195.454 kb on - strand, within EX31_RS07020at 195.511 kb on - strand, within EX31_RS07020at 195.965 kb on - strandat 195.966 kb on + strandat 195.966 kb on + strandat 195.966 kb on + strandat 195.966 kb on + strandat 195.966 kb on + strandat 195.967 kb on - strandat 195.967 kb on - strandat 195.967 kb on - strandat 195.967 kb on - strandat 196.096 kb on + strandat 196.096 kb on + strandat 196.096 kb on + strandat 196.097 kb on - strandat 196.097 kb on - strandat 196.097 kb on - strandat 196.278 kb on + strand, within EX31_RS07025at 196.278 kb on + strand, within EX31_RS07025at 196.279 kb on - strand, within EX31_RS07025at 196.363 kb on - strand, within EX31_RS07025at 196.363 kb on - strand, within EX31_RS07025at 196.400 kb on + strand, within EX31_RS07025at 196.428 kb on - strand, within EX31_RS07025at 196.429 kb on + strand, within EX31_RS07025at 196.430 kb on - strand, within EX31_RS07025at 196.430 kb on - strand, within EX31_RS07025at 196.430 kb on - strand, within EX31_RS07025at 196.722 kb on + strand, within EX31_RS07025at 196.734 kb on - strand, within EX31_RS07025at 196.913 kb on - strand, within EX31_RS07025at 197.214 kb on + strand, within EX31_RS07025at 197.214 kb on + strand, within EX31_RS07025at 197.214 kb on + strand, within EX31_RS07025at 197.256 kb on - strand, within EX31_RS07025at 197.259 kb on - strand, within EX31_RS07025at 197.422 kb on + strandat 197.422 kb on + strandat 197.423 kb on - strandat 197.428 kb on - strandat 197.430 kb on + strandat 197.431 kb on - strandat 197.584 kb on + strandat 197.584 kb on + strandat 197.585 kb on - strandat 197.659 kb on - strandat 197.683 kb on - strand, within EX31_RS07030at 197.695 kb on - strand, within EX31_RS07030at 197.735 kb on + strand, within EX31_RS07030at 197.736 kb on - strand, within EX31_RS07030at 197.736 kb on - strand, within EX31_RS07030at 197.736 kb on - strand, within EX31_RS07030at 197.736 kb on - strand, within EX31_RS07030at 197.739 kb on + strand, within EX31_RS07030at 197.739 kb on + strand, within EX31_RS07030at 197.739 kb on + strand, within EX31_RS07030at 197.740 kb on - strand, within EX31_RS07030at 197.740 kb on - strand, within EX31_RS07030at 197.740 kb on - strand, within EX31_RS07030at 197.740 kb on - strand, within EX31_RS07030at 197.740 kb on - strand, within EX31_RS07030at 197.740 kb on - strand, within EX31_RS07030at 197.740 kb on - strand, within EX31_RS07030at 197.740 kb on - strand, within EX31_RS07030at 197.740 kb on - strand, within EX31_RS07030at 197.740 kb on - strand, within EX31_RS07030at 197.740 kb on - strand, within EX31_RS07030at 197.740 kb on - strand, within EX31_RS07030at 197.740 kb on - strand, within EX31_RS07030at 197.740 kb on - strand, within EX31_RS07030at 197.740 kb on - strand, within EX31_RS07030at 197.740 kb on - strand, within EX31_RS07030at 197.740 kb on - strand, within EX31_RS07030at 197.740 kb on - strand, within EX31_RS07030at 197.740 kb on - strand, within EX31_RS07030at 197.740 kb on - strand, within EX31_RS07030at 197.740 kb on - strand, within EX31_RS07030at 197.740 kb on - strand, within EX31_RS07030at 197.740 kb on - strand, within EX31_RS07030at 197.771 kb on + strand, within EX31_RS07030at 197.772 kb on - strand, within EX31_RS07030at 197.772 kb on - strand, within EX31_RS07030at 197.791 kb on - strand, within EX31_RS07030at 197.791 kb on - strand, within EX31_RS07030at 197.791 kb on - strand, within EX31_RS07030at 197.791 kb on - strand, within EX31_RS07030at 197.791 kb on - strand, within EX31_RS07030at 197.791 kb on - strand, within EX31_RS07030at 197.791 kb on - strand, within EX31_RS07030at 197.898 kb on - strand, within EX31_RS07030at 197.909 kb on + strand, within EX31_RS07030at 197.982 kb on + strand, within EX31_RS07030at 197.994 kb on - strand, within EX31_RS07030at 197.994 kb on - strand, within EX31_RS07030at 198.110 kb on + strand, within EX31_RS07030at 198.110 kb on + strand, within EX31_RS07030at 198.110 kb on + strand, within EX31_RS07030at 198.111 kb on - strand, within EX31_RS07030at 198.261 kb on + strandat 198.306 kb on + strandat 198.306 kb on + strandat 198.311 kb on - strandat 198.332 kb on - strandat 198.332 kb on - strandat 198.332 kb on - strandat 198.341 kb on - strandat 198.341 kb on - strandat 198.341 kb on - strandat 198.341 kb on - strandat 198.341 kb on - strandat 198.477 kb on - strand, within EX31_RS07035at 198.477 kb on - strand, within EX31_RS07035

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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195,113 - EX31_RS07020 0.59 -1.2
195,157 + EX31_RS07020 0.61 -1.8
195,197 + EX31_RS07020 0.62 -0.9
195,197 + EX31_RS07020 0.62 -0.7
195,205 - EX31_RS07020 0.63 -3.5
195,205 - EX31_RS07020 0.63 -0.9
195,371 - EX31_RS07020 0.70 +0.1
195,453 + EX31_RS07020 0.73 -0.9
195,453 + EX31_RS07020 0.73 +0.8
195,454 - EX31_RS07020 0.73 -0.9
195,454 - EX31_RS07020 0.73 +0.6
195,454 - EX31_RS07020 0.73 -0.4
195,511 - EX31_RS07020 0.76 -0.9
195,965 - -1.2
195,966 + -0.6
195,966 + -0.1
195,966 + -0.7
195,966 + +1.0
195,966 + -1.2
195,967 - +0.6
195,967 - +0.1
195,967 - -3.0
195,967 - -1.5
196,096 + +0.4
196,096 + +0.1
196,096 + +0.5
196,097 - -0.5
196,097 - -1.6
196,097 - -0.7
196,278 + EX31_RS07025 0.13 -0.9
196,278 + EX31_RS07025 0.13 -0.4
196,279 - EX31_RS07025 0.14 -2.8
196,363 - EX31_RS07025 0.20 -1.2
196,363 - EX31_RS07025 0.20 -1.9
196,400 + EX31_RS07025 0.22 -0.4
196,428 - EX31_RS07025 0.24 -0.3
196,429 + EX31_RS07025 0.24 +0.7
196,430 - EX31_RS07025 0.24 +0.3
196,430 - EX31_RS07025 0.24 -0.9
196,430 - EX31_RS07025 0.24 -0.9
196,722 + EX31_RS07025 0.45 -0.7
196,734 - EX31_RS07025 0.46 -1.2
196,913 - EX31_RS07025 0.59 -1.0
197,214 + EX31_RS07025 0.80 -1.5
197,214 + EX31_RS07025 0.80 -2.1
197,214 + EX31_RS07025 0.80 +0.3
197,256 - EX31_RS07025 0.83 -0.4
197,259 - EX31_RS07025 0.83 -0.5
197,422 + +1.7
197,422 + -0.6
197,423 - +0.2
197,428 - +0.5
197,430 + -1.2
197,431 - +0.8
197,584 + +1.0
197,584 + -1.2
197,585 - -1.3
197,659 - +0.4
197,683 - EX31_RS07030 0.11 +0.1
197,695 - EX31_RS07030 0.13 -0.2
197,735 + EX31_RS07030 0.19 -2.9
197,736 - EX31_RS07030 0.19 +0.1
197,736 - EX31_RS07030 0.19 -1.0
197,736 - EX31_RS07030 0.19 +0.1
197,736 - EX31_RS07030 0.19 -0.5
197,739 + EX31_RS07030 0.20 +0.5
197,739 + EX31_RS07030 0.20 -0.9
197,739 + EX31_RS07030 0.20 -0.0
197,740 - EX31_RS07030 0.20 +0.2
197,740 - EX31_RS07030 0.20 +1.4
197,740 - EX31_RS07030 0.20 +0.0
197,740 - EX31_RS07030 0.20 -0.1
197,740 - EX31_RS07030 0.20 -1.2
197,740 - EX31_RS07030 0.20 +0.2
197,740 - EX31_RS07030 0.20 +0.3
197,740 - EX31_RS07030 0.20 -0.8
197,740 - EX31_RS07030 0.20 +1.1
197,740 - EX31_RS07030 0.20 +1.0
197,740 - EX31_RS07030 0.20 -0.3
197,740 - EX31_RS07030 0.20 -0.2
197,740 - EX31_RS07030 0.20 +0.9
197,740 - EX31_RS07030 0.20 -0.2
197,740 - EX31_RS07030 0.20 -0.0
197,740 - EX31_RS07030 0.20 +0.6
197,740 - EX31_RS07030 0.20 +2.1
197,740 - EX31_RS07030 0.20 -0.9
197,740 - EX31_RS07030 0.20 +1.3
197,740 - EX31_RS07030 0.20 +1.5
197,740 - EX31_RS07030 0.20 -0.6
197,740 - EX31_RS07030 0.20 -0.7
197,740 - EX31_RS07030 0.20 -2.7
197,771 + EX31_RS07030 0.24 -2.8
197,772 - EX31_RS07030 0.25 -1.9
197,772 - EX31_RS07030 0.25 -0.1
197,791 - EX31_RS07030 0.27 -0.4
197,791 - EX31_RS07030 0.27 +0.9
197,791 - EX31_RS07030 0.27 -0.5
197,791 - EX31_RS07030 0.27 +1.4
197,791 - EX31_RS07030 0.27 -0.3
197,791 - EX31_RS07030 0.27 +0.1
197,791 - EX31_RS07030 0.27 +1.0
197,898 - EX31_RS07030 0.43 -0.6
197,909 + EX31_RS07030 0.45 -0.3
197,982 + EX31_RS07030 0.56 -2.2
197,994 - EX31_RS07030 0.58 -0.3
197,994 - EX31_RS07030 0.58 +0.0
198,110 + EX31_RS07030 0.75 -1.2
198,110 + EX31_RS07030 0.75 -1.3
198,110 + EX31_RS07030 0.75 -0.1
198,111 - EX31_RS07030 0.75 -4.2
198,261 + +0.2
198,306 + -1.9
198,306 + +0.8
198,311 - +0.2
198,332 - +0.7
198,332 - +1.4
198,332 - -0.4
198,341 - -0.3
198,341 - -1.7
198,341 - -1.9
198,341 - -1.2
198,341 - -0.6
198,477 - EX31_RS07035 0.15 +0.5
198,477 - EX31_RS07035 0.15 -1.9

Or see this region's nucleotide sequence