Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS06835 and EX31_RS06840 overlap by 8 nucleotides EX31_RS06840 and EX31_RS06845 overlap by 8 nucleotides EX31_RS06845 and EX31_RS06850 are separated by 129 nucleotides
EX31_RS06835: EX31_RS06835 - polysaccharide deacetylase, at 154,594 to 155,448
_RS06835
EX31_RS06840: EX31_RS06840 - polysaccharide deacetylase, at 155,441 to 156,343
_RS06840
EX31_RS06845: EX31_RS06845 - MmgE/PrpD family protein, at 156,336 to 157,691
_RS06845
EX31_RS06850: EX31_RS06850 - oxidoreductase, at 157,821 to 158,867
_RS06850
Position (kb) 156
157
158 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 155.340 kb on + strand, within EX31_RS06835 at 155.341 kb on - strand, within EX31_RS06835 at 155.345 kb on + strand, within EX31_RS06835 at 155.346 kb on - strand, within EX31_RS06835 at 155.346 kb on - strand, within EX31_RS06835 at 155.488 kb on + strand at 155.489 kb on - strand at 155.489 kb on - strand at 155.506 kb on + strand at 155.691 kb on + strand, within EX31_RS06840 at 155.691 kb on + strand, within EX31_RS06840 at 155.691 kb on + strand, within EX31_RS06840 at 156.066 kb on - strand, within EX31_RS06840 at 156.085 kb on + strand, within EX31_RS06840 at 156.085 kb on + strand, within EX31_RS06840 at 156.128 kb on + strand, within EX31_RS06840 at 156.128 kb on + strand, within EX31_RS06840 at 156.129 kb on - strand, within EX31_RS06840 at 156.129 kb on - strand, within EX31_RS06840 at 156.178 kb on + strand, within EX31_RS06840 at 156.178 kb on + strand, within EX31_RS06840 at 156.178 kb on + strand, within EX31_RS06840 at 156.179 kb on - strand, within EX31_RS06840 at 156.200 kb on + strand, within EX31_RS06840 at 156.200 kb on + strand, within EX31_RS06840 at 156.200 kb on + strand, within EX31_RS06840 at 156.200 kb on + strand, within EX31_RS06840 at 156.201 kb on - strand, within EX31_RS06840 at 156.335 kb on + strand at 156.335 kb on + strand at 156.336 kb on - strand at 156.341 kb on + strand at 156.341 kb on + strand at 156.342 kb on - strand at 156.342 kb on - strand at 156.673 kb on + strand, within EX31_RS06845 at 156.674 kb on - strand, within EX31_RS06845 at 156.682 kb on + strand, within EX31_RS06845 at 156.735 kb on + strand, within EX31_RS06845 at 156.785 kb on + strand, within EX31_RS06845 at 156.786 kb on - strand, within EX31_RS06845 at 156.853 kb on + strand, within EX31_RS06845 at 156.929 kb on + strand, within EX31_RS06845 at 157.036 kb on + strand, within EX31_RS06845 at 157.156 kb on - strand, within EX31_RS06845 at 157.392 kb on - strand, within EX31_RS06845 at 157.630 kb on + strand at 157.667 kb on + strand at 157.670 kb on + strand at 157.804 kb on + strand at 157.869 kb on - strand at 158.042 kb on + strand, within EX31_RS06850 at 158.042 kb on + strand, within EX31_RS06850 at 158.116 kb on + strand, within EX31_RS06850 at 158.259 kb on + strand, within EX31_RS06850 at 158.274 kb on + strand, within EX31_RS06850 at 158.274 kb on + strand, within EX31_RS06850 at 158.283 kb on + strand, within EX31_RS06850 at 158.422 kb on + strand, within EX31_RS06850 at 158.452 kb on - strand, within EX31_RS06850 at 158.560 kb on - strand, within EX31_RS06850 at 158.658 kb on - strand, within EX31_RS06850
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 155,340 + EX31_RS06835 0.87 +1.6 155,341 - EX31_RS06835 0.87 +0.1 155,345 + EX31_RS06835 0.88 -0.3 155,346 - EX31_RS06835 0.88 -1.7 155,346 - EX31_RS06835 0.88 -2.2 155,488 + -0.4 155,489 - -1.5 155,489 - -1.0 155,506 + -0.3 155,691 + EX31_RS06840 0.28 +0.0 155,691 + EX31_RS06840 0.28 -0.4 155,691 + EX31_RS06840 0.28 +0.5 156,066 - EX31_RS06840 0.69 +1.2 156,085 + EX31_RS06840 0.71 -0.3 156,085 + EX31_RS06840 0.71 -0.1 156,128 + EX31_RS06840 0.76 +0.1 156,128 + EX31_RS06840 0.76 -0.3 156,129 - EX31_RS06840 0.76 -0.9 156,129 - EX31_RS06840 0.76 -1.3 156,178 + EX31_RS06840 0.82 -1.7 156,178 + EX31_RS06840 0.82 +0.9 156,178 + EX31_RS06840 0.82 +0.3 156,179 - EX31_RS06840 0.82 +0.7 156,200 + EX31_RS06840 0.84 +0.3 156,200 + EX31_RS06840 0.84 +0.2 156,200 + EX31_RS06840 0.84 -3.1 156,200 + EX31_RS06840 0.84 -1.1 156,201 - EX31_RS06840 0.84 +0.7 156,335 + -0.6 156,335 + -2.6 156,336 - -0.3 156,341 + -0.4 156,341 + +1.7 156,342 - -2.6 156,342 - +0.3 156,673 + EX31_RS06845 0.25 -2.3 156,674 - EX31_RS06845 0.25 -0.3 156,682 + EX31_RS06845 0.26 -1.3 156,735 + EX31_RS06845 0.29 -2.1 156,785 + EX31_RS06845 0.33 +1.2 156,786 - EX31_RS06845 0.33 -1.4 156,853 + EX31_RS06845 0.38 -1.3 156,929 + EX31_RS06845 0.44 -1.3 157,036 + EX31_RS06845 0.52 +0.3 157,156 - EX31_RS06845 0.60 -3.3 157,392 - EX31_RS06845 0.78 -1.0 157,630 + +0.0 157,667 + +1.7 157,670 + +1.3 157,804 + -0.7 157,869 - -0.1 158,042 + EX31_RS06850 0.21 +0.2 158,042 + EX31_RS06850 0.21 -2.0 158,116 + EX31_RS06850 0.28 -1.7 158,259 + EX31_RS06850 0.42 -2.0 158,274 + EX31_RS06850 0.43 -1.6 158,274 + EX31_RS06850 0.43 -1.0 158,283 + EX31_RS06850 0.44 +0.2 158,422 + EX31_RS06850 0.57 +0.4 158,452 - EX31_RS06850 0.60 +0.8 158,560 - EX31_RS06850 0.71 +0.0 158,658 - EX31_RS06850 0.80 +0.9
Or see this region's nucleotide sequence