Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS06730 and EX31_RS06735 overlap by 4 nucleotides EX31_RS06735 and EX31_RS06740 are separated by 247 nucleotides
EX31_RS06730: EX31_RS06730 - formimidoylglutamate deiminase, at 130,959 to 132,332
_RS06730
EX31_RS06735: EX31_RS06735 - HutD family protein, at 132,329 to 132,910
_RS06735
EX31_RS06740: EX31_RS06740 - ABC transporter substrate-binding protein, at 133,158 to 134,138
_RS06740
Position (kb) 132
133 Strain fitness (log2 ratio) -2
-1
0
1
2 at 131.349 kb on + strand, within EX31_RS06730 at 131.486 kb on + strand, within EX31_RS06730 at 131.505 kb on + strand, within EX31_RS06730 at 131.505 kb on + strand, within EX31_RS06730 at 131.506 kb on - strand, within EX31_RS06730 at 131.652 kb on - strand, within EX31_RS06730 at 131.652 kb on - strand, within EX31_RS06730 at 131.658 kb on - strand, within EX31_RS06730 at 131.727 kb on + strand, within EX31_RS06730 at 131.967 kb on + strand, within EX31_RS06730 at 131.996 kb on + strand, within EX31_RS06730 at 132.042 kb on + strand, within EX31_RS06730 at 132.056 kb on - strand, within EX31_RS06730 at 132.225 kb on + strand at 132.225 kb on + strand at 132.225 kb on + strand at 132.225 kb on + strand at 132.225 kb on + strand at 132.226 kb on - strand at 132.226 kb on - strand at 132.226 kb on - strand at 132.226 kb on - strand at 132.226 kb on - strand at 132.610 kb on + strand, within EX31_RS06735 at 132.656 kb on - strand, within EX31_RS06735 at 132.673 kb on + strand, within EX31_RS06735 at 132.673 kb on + strand, within EX31_RS06735 at 132.746 kb on + strand, within EX31_RS06735 at 132.809 kb on + strand, within EX31_RS06735 at 132.911 kb on + strand at 132.912 kb on - strand at 132.915 kb on + strand at 132.915 kb on + strand at 132.915 kb on + strand at 133.045 kb on + strand at 133.067 kb on - strand at 133.068 kb on + strand at 133.069 kb on - strand at 133.091 kb on - strand at 133.138 kb on + strand at 133.138 kb on + strand at 133.139 kb on - strand at 133.139 kb on - strand at 133.139 kb on - strand at 133.207 kb on + strand at 133.274 kb on + strand, within EX31_RS06740 at 133.275 kb on - strand, within EX31_RS06740 at 133.275 kb on - strand, within EX31_RS06740 at 133.280 kb on + strand, within EX31_RS06740 at 133.280 kb on + strand, within EX31_RS06740 at 133.280 kb on + strand, within EX31_RS06740 at 133.281 kb on - strand, within EX31_RS06740 at 133.444 kb on - strand, within EX31_RS06740 at 133.447 kb on + strand, within EX31_RS06740 at 133.448 kb on - strand, within EX31_RS06740 at 133.486 kb on + strand, within EX31_RS06740 at 133.599 kb on + strand, within EX31_RS06740 at 133.600 kb on - strand, within EX31_RS06740 at 133.600 kb on - strand, within EX31_RS06740 at 133.695 kb on - strand, within EX31_RS06740 at 133.725 kb on + strand, within EX31_RS06740 at 133.725 kb on + strand, within EX31_RS06740 at 133.725 kb on + strand, within EX31_RS06740 at 133.726 kb on - strand, within EX31_RS06740 at 133.726 kb on - strand, within EX31_RS06740 at 133.726 kb on - strand, within EX31_RS06740 at 133.734 kb on + strand, within EX31_RS06740 at 133.878 kb on + strand, within EX31_RS06740 at 133.879 kb on - strand, within EX31_RS06740
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 131,349 + EX31_RS06730 0.28 +0.5 131,486 + EX31_RS06730 0.38 -1.1 131,505 + EX31_RS06730 0.40 +0.7 131,505 + EX31_RS06730 0.40 +0.5 131,506 - EX31_RS06730 0.40 +0.4 131,652 - EX31_RS06730 0.50 -1.8 131,652 - EX31_RS06730 0.50 +0.7 131,658 - EX31_RS06730 0.51 -2.6 131,727 + EX31_RS06730 0.56 +0.6 131,967 + EX31_RS06730 0.73 +1.5 131,996 + EX31_RS06730 0.75 -1.2 132,042 + EX31_RS06730 0.79 +0.6 132,056 - EX31_RS06730 0.80 -1.2 132,225 + -1.1 132,225 + -1.6 132,225 + -1.4 132,225 + -1.5 132,225 + +0.5 132,226 - -0.3 132,226 - +2.0 132,226 - -1.0 132,226 - +0.3 132,226 - -0.1 132,610 + EX31_RS06735 0.48 -0.1 132,656 - EX31_RS06735 0.56 -1.8 132,673 + EX31_RS06735 0.59 +0.3 132,673 + EX31_RS06735 0.59 -1.1 132,746 + EX31_RS06735 0.72 -1.1 132,809 + EX31_RS06735 0.82 +2.1 132,911 + +1.5 132,912 - -0.1 132,915 + -2.2 132,915 + +1.2 132,915 + -2.1 133,045 + -0.3 133,067 - -1.4 133,068 + +0.5 133,069 - -1.3 133,091 - -0.3 133,138 + -2.4 133,138 + +1.8 133,139 - +0.1 133,139 - +0.6 133,139 - +0.3 133,207 + -1.2 133,274 + EX31_RS06740 0.12 -0.0 133,275 - EX31_RS06740 0.12 -2.1 133,275 - EX31_RS06740 0.12 +0.8 133,280 + EX31_RS06740 0.12 +0.5 133,280 + EX31_RS06740 0.12 +0.4 133,280 + EX31_RS06740 0.12 -1.5 133,281 - EX31_RS06740 0.13 +0.9 133,444 - EX31_RS06740 0.29 +0.2 133,447 + EX31_RS06740 0.29 -0.7 133,448 - EX31_RS06740 0.30 -0.8 133,486 + EX31_RS06740 0.33 -0.1 133,599 + EX31_RS06740 0.45 -0.1 133,600 - EX31_RS06740 0.45 -1.3 133,600 - EX31_RS06740 0.45 -0.3 133,695 - EX31_RS06740 0.55 -1.3 133,725 + EX31_RS06740 0.58 -0.3 133,725 + EX31_RS06740 0.58 +1.3 133,725 + EX31_RS06740 0.58 +0.2 133,726 - EX31_RS06740 0.58 +0.6 133,726 - EX31_RS06740 0.58 -0.1 133,726 - EX31_RS06740 0.58 -2.3 133,734 + EX31_RS06740 0.59 -0.5 133,878 + EX31_RS06740 0.73 +0.9 133,879 - EX31_RS06740 0.73 +0.8
Or see this region's nucleotide sequence