Strain Fitness in Rahnella sp. WP5 around EX31_RS06625

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS06615 and EX31_RS06620 overlap by 1 nucleotidesEX31_RS06620 and EX31_RS06625 are separated by 40 nucleotidesEX31_RS06625 and EX31_RS06630 are separated by 159 nucleotides EX31_RS06615: EX31_RS06615 - electron transport complex subunit RsxB, at 99,108 to 99,674 _RS06615 EX31_RS06620: EX31_RS06620 - electron transport complex subunit RsxA, at 99,674 to 100,255 _RS06620 EX31_RS06625: EX31_RS06625 - DUF2569 domain-containing protein, at 100,296 to 100,736 _RS06625 EX31_RS06630: EX31_RS06630 - anaerobic C4-dicarboxylate transporter DcuC, at 100,896 to 102,263 _RS06630 Position (kb) 100 101Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 99.309 kb on - strand, within EX31_RS06615at 99.309 kb on - strand, within EX31_RS06615at 99.309 kb on - strand, within EX31_RS06615at 99.309 kb on - strand, within EX31_RS06615at 99.309 kb on - strand, within EX31_RS06615at 99.309 kb on - strand, within EX31_RS06615at 99.346 kb on + strand, within EX31_RS06615at 99.347 kb on - strand, within EX31_RS06615at 99.462 kb on - strand, within EX31_RS06615at 99.462 kb on - strand, within EX31_RS06615at 99.462 kb on - strand, within EX31_RS06615at 99.462 kb on - strand, within EX31_RS06615at 99.497 kb on - strand, within EX31_RS06615at 99.497 kb on - strand, within EX31_RS06615at 99.675 kb on + strandat 99.676 kb on - strandat 99.704 kb on - strandat 99.711 kb on - strandat 99.850 kb on - strand, within EX31_RS06620at 100.025 kb on - strand, within EX31_RS06620at 100.034 kb on - strand, within EX31_RS06620at 100.034 kb on - strand, within EX31_RS06620at 100.097 kb on - strand, within EX31_RS06620at 100.097 kb on - strand, within EX31_RS06620at 100.203 kb on - strandat 100.210 kb on + strandat 100.211 kb on - strandat 100.211 kb on - strandat 100.211 kb on - strandat 100.215 kb on - strandat 100.215 kb on - strandat 100.246 kb on - strandat 100.246 kb on - strandat 100.246 kb on - strandat 100.246 kb on - strandat 100.246 kb on - strandat 100.276 kb on - strandat 100.283 kb on - strandat 100.372 kb on - strand, within EX31_RS06625at 100.378 kb on - strand, within EX31_RS06625at 100.460 kb on + strand, within EX31_RS06625at 100.461 kb on - strand, within EX31_RS06625at 100.461 kb on - strand, within EX31_RS06625at 100.461 kb on - strand, within EX31_RS06625at 100.461 kb on - strand, within EX31_RS06625at 100.464 kb on - strand, within EX31_RS06625at 100.465 kb on + strand, within EX31_RS06625at 100.466 kb on - strand, within EX31_RS06625at 100.494 kb on - strand, within EX31_RS06625at 100.525 kb on - strand, within EX31_RS06625at 100.525 kb on - strand, within EX31_RS06625at 100.559 kb on - strand, within EX31_RS06625at 100.572 kb on - strand, within EX31_RS06625at 100.617 kb on - strand, within EX31_RS06625at 100.621 kb on - strand, within EX31_RS06625at 100.648 kb on - strand, within EX31_RS06625at 100.651 kb on - strand, within EX31_RS06625at 100.651 kb on - strand, within EX31_RS06625at 100.716 kb on - strandat 100.716 kb on - strandat 100.716 kb on - strandat 100.716 kb on - strandat 100.716 kb on - strandat 100.716 kb on - strandat 100.737 kb on - strandat 100.737 kb on - strandat 100.737 kb on - strandat 100.807 kb on + strandat 100.808 kb on - strandat 100.813 kb on - strandat 100.840 kb on + strandat 100.840 kb on + strandat 100.840 kb on + strandat 100.840 kb on + strandat 100.840 kb on + strandat 100.841 kb on - strandat 100.841 kb on - strandat 100.841 kb on - strandat 100.844 kb on + strandat 100.845 kb on - strandat 101.019 kb on + strandat 101.043 kb on - strand, within EX31_RS06630at 101.086 kb on + strand, within EX31_RS06630at 101.144 kb on - strand, within EX31_RS06630at 101.397 kb on - strand, within EX31_RS06630at 101.425 kb on - strand, within EX31_RS06630at 101.429 kb on + strand, within EX31_RS06630at 101.429 kb on + strand, within EX31_RS06630at 101.429 kb on + strand, within EX31_RS06630at 101.429 kb on + strand, within EX31_RS06630at 101.429 kb on + strand, within EX31_RS06630at 101.429 kb on + strand, within EX31_RS06630at 101.429 kb on + strand, within EX31_RS06630at 101.430 kb on - strand, within EX31_RS06630at 101.430 kb on - strand, within EX31_RS06630at 101.430 kb on - strand, within EX31_RS06630at 101.430 kb on - strand, within EX31_RS06630at 101.430 kb on - strand, within EX31_RS06630at 101.430 kb on - strand, within EX31_RS06630at 101.453 kb on + strand, within EX31_RS06630at 101.454 kb on - strand, within EX31_RS06630at 101.474 kb on + strand, within EX31_RS06630at 101.520 kb on - strand, within EX31_RS06630at 101.525 kb on - strand, within EX31_RS06630

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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99,309 - EX31_RS06615 0.35 -0.4
99,309 - EX31_RS06615 0.35 -2.8
99,309 - EX31_RS06615 0.35 +1.2
99,309 - EX31_RS06615 0.35 +0.1
99,309 - EX31_RS06615 0.35 +0.2
99,309 - EX31_RS06615 0.35 +0.1
99,346 + EX31_RS06615 0.42 -1.7
99,347 - EX31_RS06615 0.42 +1.7
99,462 - EX31_RS06615 0.62 +0.7
99,462 - EX31_RS06615 0.62 -0.0
99,462 - EX31_RS06615 0.62 +0.4
99,462 - EX31_RS06615 0.62 -0.4
99,497 - EX31_RS06615 0.69 +0.9
99,497 - EX31_RS06615 0.69 -2.1
99,675 + +0.2
99,676 - -1.6
99,704 - +1.1
99,711 - +1.2
99,850 - EX31_RS06620 0.30 -0.8
100,025 - EX31_RS06620 0.60 -0.4
100,034 - EX31_RS06620 0.62 -0.3
100,034 - EX31_RS06620 0.62 +0.6
100,097 - EX31_RS06620 0.73 -0.5
100,097 - EX31_RS06620 0.73 +0.3
100,203 - -0.4
100,210 + -2.3
100,211 - +0.9
100,211 - -1.6
100,211 - -0.4
100,215 - -0.2
100,215 - -1.1
100,246 - +0.7
100,246 - -0.5
100,246 - +0.0
100,246 - -0.2
100,246 - -0.2
100,276 - -0.9
100,283 - -0.1
100,372 - EX31_RS06625 0.17 -0.5
100,378 - EX31_RS06625 0.19 +0.1
100,460 + EX31_RS06625 0.37 -1.0
100,461 - EX31_RS06625 0.37 +0.5
100,461 - EX31_RS06625 0.37 -1.3
100,461 - EX31_RS06625 0.37 +0.8
100,461 - EX31_RS06625 0.37 -1.3
100,464 - EX31_RS06625 0.38 -1.8
100,465 + EX31_RS06625 0.38 -0.9
100,466 - EX31_RS06625 0.39 +2.1
100,494 - EX31_RS06625 0.45 -1.2
100,525 - EX31_RS06625 0.52 +0.1
100,525 - EX31_RS06625 0.52 +0.2
100,559 - EX31_RS06625 0.60 -0.6
100,572 - EX31_RS06625 0.63 -1.2
100,617 - EX31_RS06625 0.73 -0.9
100,621 - EX31_RS06625 0.74 -0.9
100,648 - EX31_RS06625 0.80 -1.2
100,651 - EX31_RS06625 0.80 +1.8
100,651 - EX31_RS06625 0.80 -0.1
100,716 - -1.6
100,716 - -0.4
100,716 - +0.6
100,716 - -0.4
100,716 - +0.5
100,716 - -0.9
100,737 - +0.1
100,737 - +0.6
100,737 - -1.6
100,807 + +0.2
100,808 - +0.6
100,813 - -0.8
100,840 + -0.5
100,840 + +0.2
100,840 + -0.2
100,840 + +0.1
100,840 + -3.1
100,841 - -0.6
100,841 - +1.0
100,841 - -3.7
100,844 + -1.2
100,845 - +1.4
101,019 + -0.5
101,043 - EX31_RS06630 0.11 -0.9
101,086 + EX31_RS06630 0.14 +0.7
101,144 - EX31_RS06630 0.18 -1.4
101,397 - EX31_RS06630 0.37 -0.1
101,425 - EX31_RS06630 0.39 +0.2
101,429 + EX31_RS06630 0.39 -0.5
101,429 + EX31_RS06630 0.39 +0.3
101,429 + EX31_RS06630 0.39 +0.4
101,429 + EX31_RS06630 0.39 +1.5
101,429 + EX31_RS06630 0.39 +0.9
101,429 + EX31_RS06630 0.39 -1.2
101,429 + EX31_RS06630 0.39 +0.1
101,430 - EX31_RS06630 0.39 +0.6
101,430 - EX31_RS06630 0.39 +0.9
101,430 - EX31_RS06630 0.39 +0.5
101,430 - EX31_RS06630 0.39 -0.8
101,430 - EX31_RS06630 0.39 -0.9
101,430 - EX31_RS06630 0.39 -3.1
101,453 + EX31_RS06630 0.41 +1.1
101,454 - EX31_RS06630 0.41 +1.2
101,474 + EX31_RS06630 0.42 +0.5
101,520 - EX31_RS06630 0.46 -1.0
101,525 - EX31_RS06630 0.46 -2.8

Or see this region's nucleotide sequence