Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS06395 and EX31_RS06400 overlap by 4 nucleotides EX31_RS06400 and EX31_RS06405 are separated by 10 nucleotides EX31_RS06405 and EX31_RS06410 are separated by 94 nucleotides
EX31_RS06395: EX31_RS06395 - alginate lyase family protein, at 42,986 to 44,329
_RS06395
EX31_RS06400: EX31_RS06400 - chondroitin lyase, at 44,326 to 46,464
_RS06400
EX31_RS06405: EX31_RS06405 - SDR family oxidoreductase, at 46,475 to 47,251
_RS06405
EX31_RS06410: EX31_RS06410 - FadR family transcriptional regulator, at 47,346 to 48,056
_RS06410
Position (kb) 44
45
46
47 Strain fitness (log2 ratio) -2
-1
0
1
2 at 43.348 kb on - strand, within EX31_RS06395 at 43.348 kb on - strand, within EX31_RS06395 at 43.433 kb on + strand, within EX31_RS06395 at 43.480 kb on - strand, within EX31_RS06395 at 43.530 kb on - strand, within EX31_RS06395 at 43.565 kb on - strand, within EX31_RS06395 at 43.735 kb on + strand, within EX31_RS06395 at 43.760 kb on + strand, within EX31_RS06395 at 43.760 kb on + strand, within EX31_RS06395 at 43.760 kb on + strand, within EX31_RS06395 at 43.791 kb on - strand, within EX31_RS06395 at 43.791 kb on - strand, within EX31_RS06395 at 43.791 kb on - strand, within EX31_RS06395 at 43.916 kb on + strand, within EX31_RS06395 at 43.916 kb on + strand, within EX31_RS06395 at 43.917 kb on - strand, within EX31_RS06395 at 44.066 kb on + strand, within EX31_RS06395 at 44.066 kb on + strand, within EX31_RS06395 at 44.067 kb on - strand, within EX31_RS06395 at 44.153 kb on + strand, within EX31_RS06395 at 44.213 kb on + strand at 44.213 kb on + strand at 44.213 kb on + strand at 44.213 kb on + strand at 44.213 kb on + strand at 44.213 kb on + strand at 44.213 kb on + strand at 44.213 kb on + strand at 44.213 kb on + strand at 44.213 kb on + strand at 44.214 kb on - strand at 44.294 kb on + strand at 44.294 kb on + strand at 44.294 kb on + strand at 44.294 kb on + strand at 44.294 kb on + strand at 44.294 kb on + strand at 44.295 kb on - strand at 44.295 kb on - strand at 44.295 kb on - strand at 44.323 kb on + strand at 44.324 kb on - strand at 44.324 kb on - strand at 44.324 kb on - strand at 44.352 kb on - strand at 44.388 kb on + strand at 44.521 kb on + strand at 44.522 kb on - strand at 44.522 kb on - strand at 44.697 kb on + strand, within EX31_RS06400 at 44.697 kb on + strand, within EX31_RS06400 at 44.698 kb on - strand, within EX31_RS06400 at 44.710 kb on + strand, within EX31_RS06400 at 44.725 kb on + strand, within EX31_RS06400 at 44.912 kb on + strand, within EX31_RS06400 at 44.924 kb on + strand, within EX31_RS06400 at 44.924 kb on + strand, within EX31_RS06400 at 44.924 kb on + strand, within EX31_RS06400 at 44.925 kb on - strand, within EX31_RS06400 at 44.925 kb on - strand, within EX31_RS06400 at 44.925 kb on - strand, within EX31_RS06400 at 44.926 kb on + strand, within EX31_RS06400 at 44.927 kb on - strand, within EX31_RS06400 at 44.927 kb on - strand, within EX31_RS06400 at 44.999 kb on - strand, within EX31_RS06400 at 45.001 kb on + strand, within EX31_RS06400 at 45.001 kb on + strand, within EX31_RS06400 at 45.002 kb on - strand, within EX31_RS06400 at 45.002 kb on - strand, within EX31_RS06400 at 45.003 kb on + strand, within EX31_RS06400 at 45.016 kb on + strand, within EX31_RS06400 at 45.115 kb on - strand, within EX31_RS06400 at 45.623 kb on - strand, within EX31_RS06400 at 45.623 kb on - strand, within EX31_RS06400 at 45.639 kb on + strand, within EX31_RS06400 at 45.644 kb on - strand, within EX31_RS06400 at 45.644 kb on - strand, within EX31_RS06400 at 45.644 kb on - strand, within EX31_RS06400 at 45.769 kb on + strand, within EX31_RS06400 at 45.792 kb on + strand, within EX31_RS06400 at 45.792 kb on + strand, within EX31_RS06400 at 45.793 kb on - strand, within EX31_RS06400 at 45.793 kb on - strand, within EX31_RS06400 at 45.799 kb on + strand, within EX31_RS06400 at 45.800 kb on - strand, within EX31_RS06400 at 45.802 kb on + strand, within EX31_RS06400 at 46.016 kb on + strand, within EX31_RS06400 at 46.087 kb on + strand, within EX31_RS06400 at 46.164 kb on + strand, within EX31_RS06400 at 46.187 kb on + strand, within EX31_RS06400 at 46.246 kb on + strand, within EX31_RS06400 at 46.346 kb on - strand at 46.462 kb on + strand at 46.474 kb on + strand at 46.528 kb on + strand at 46.528 kb on + strand at 46.714 kb on - strand, within EX31_RS06405 at 46.737 kb on + strand, within EX31_RS06405 at 46.737 kb on + strand, within EX31_RS06405 at 46.738 kb on - strand, within EX31_RS06405 at 47.169 kb on - strand, within EX31_RS06405 at 47.201 kb on + strand at 47.202 kb on - strand at 47.308 kb on + strand at 47.308 kb on + strand at 47.308 kb on + strand at 47.309 kb on - strand at 47.309 kb on - strand at 47.309 kb on - strand at 47.309 kb on - strand at 47.309 kb on - strand at 47.309 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 43,348 - EX31_RS06395 0.27 +0.6 43,348 - EX31_RS06395 0.27 -1.9 43,433 + EX31_RS06395 0.33 +0.6 43,480 - EX31_RS06395 0.37 +0.5 43,530 - EX31_RS06395 0.40 -0.2 43,565 - EX31_RS06395 0.43 -0.9 43,735 + EX31_RS06395 0.56 +0.1 43,760 + EX31_RS06395 0.58 +0.3 43,760 + EX31_RS06395 0.58 +0.8 43,760 + EX31_RS06395 0.58 -2.0 43,791 - EX31_RS06395 0.60 +1.8 43,791 - EX31_RS06395 0.60 -0.4 43,791 - EX31_RS06395 0.60 -0.9 43,916 + EX31_RS06395 0.69 -0.5 43,916 + EX31_RS06395 0.69 +0.6 43,917 - EX31_RS06395 0.69 +0.3 44,066 + EX31_RS06395 0.80 -1.4 44,066 + EX31_RS06395 0.80 -1.6 44,067 - EX31_RS06395 0.80 -0.2 44,153 + EX31_RS06395 0.87 +0.0 44,213 + +0.8 44,213 + +0.0 44,213 + +2.3 44,213 + +0.9 44,213 + -1.5 44,213 + -0.7 44,213 + -1.0 44,213 + +0.5 44,213 + -0.8 44,213 + -0.5 44,214 - -1.2 44,294 + -0.6 44,294 + +0.2 44,294 + -0.1 44,294 + -0.6 44,294 + +1.0 44,294 + -2.2 44,295 - +0.1 44,295 - +0.4 44,295 - -0.7 44,323 + -0.1 44,324 - +0.8 44,324 - -1.3 44,324 - -1.4 44,352 - +0.6 44,388 + -0.7 44,521 + +1.2 44,522 - +0.2 44,522 - -0.5 44,697 + EX31_RS06400 0.17 +0.6 44,697 + EX31_RS06400 0.17 -0.8 44,698 - EX31_RS06400 0.17 -1.8 44,710 + EX31_RS06400 0.18 -2.3 44,725 + EX31_RS06400 0.19 +0.1 44,912 + EX31_RS06400 0.27 -1.3 44,924 + EX31_RS06400 0.28 -0.2 44,924 + EX31_RS06400 0.28 -2.6 44,924 + EX31_RS06400 0.28 +1.1 44,925 - EX31_RS06400 0.28 -1.2 44,925 - EX31_RS06400 0.28 -0.8 44,925 - EX31_RS06400 0.28 -0.3 44,926 + EX31_RS06400 0.28 -0.2 44,927 - EX31_RS06400 0.28 -0.4 44,927 - EX31_RS06400 0.28 -0.2 44,999 - EX31_RS06400 0.31 -0.4 45,001 + EX31_RS06400 0.32 -1.0 45,001 + EX31_RS06400 0.32 -0.7 45,002 - EX31_RS06400 0.32 -0.2 45,002 - EX31_RS06400 0.32 -1.7 45,003 + EX31_RS06400 0.32 -1.0 45,016 + EX31_RS06400 0.32 -1.6 45,115 - EX31_RS06400 0.37 -0.6 45,623 - EX31_RS06400 0.61 -0.6 45,623 - EX31_RS06400 0.61 -0.5 45,639 + EX31_RS06400 0.61 -1.2 45,644 - EX31_RS06400 0.62 +0.2 45,644 - EX31_RS06400 0.62 -1.3 45,644 - EX31_RS06400 0.62 -0.6 45,769 + EX31_RS06400 0.67 -1.8 45,792 + EX31_RS06400 0.69 -0.9 45,792 + EX31_RS06400 0.69 -2.1 45,793 - EX31_RS06400 0.69 -0.1 45,793 - EX31_RS06400 0.69 +1.0 45,799 + EX31_RS06400 0.69 +0.1 45,800 - EX31_RS06400 0.69 -0.2 45,802 + EX31_RS06400 0.69 -0.6 46,016 + EX31_RS06400 0.79 +0.2 46,087 + EX31_RS06400 0.82 +0.2 46,164 + EX31_RS06400 0.86 -1.8 46,187 + EX31_RS06400 0.87 +0.3 46,246 + EX31_RS06400 0.90 -1.1 46,346 - -2.7 46,462 + +0.5 46,474 + +0.6 46,528 + +1.7 46,528 + -1.1 46,714 - EX31_RS06405 0.31 -1.2 46,737 + EX31_RS06405 0.34 +0.2 46,737 + EX31_RS06405 0.34 -0.9 46,738 - EX31_RS06405 0.34 +0.1 47,169 - EX31_RS06405 0.89 +0.5 47,201 + -1.2 47,202 - -0.8 47,308 + -0.2 47,308 + +1.1 47,308 + +0.5 47,309 - -1.2 47,309 - +1.2 47,309 - +0.8 47,309 - +1.1 47,309 - -0.1 47,309 - +0.1
Or see this region's nucleotide sequence