Strain Fitness in Rahnella sp. WP5 around EX31_RS05200

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS05195 and EX31_RS05200 overlap by 4 nucleotidesEX31_RS05200 and EX31_RS05205 are separated by 62 nucleotides EX31_RS05195: EX31_RS05195 - MFS transporter, at 176,254 to 177,840 _RS05195 EX31_RS05200: EX31_RS05200 - DoxX family protein, at 177,837 to 178,256 _RS05200 EX31_RS05205: EX31_RS05205 - hydrolase, at 178,319 to 178,960 _RS05205 Position (kb) 177 178 179Strain fitness (log2 ratio) -3 -2 -1 0 1at 176.866 kb on + strand, within EX31_RS05195at 176.867 kb on - strand, within EX31_RS05195at 176.870 kb on - strand, within EX31_RS05195at 176.921 kb on - strand, within EX31_RS05195at 176.921 kb on - strand, within EX31_RS05195at 176.941 kb on + strand, within EX31_RS05195at 176.941 kb on + strand, within EX31_RS05195at 176.942 kb on - strand, within EX31_RS05195at 176.942 kb on - strand, within EX31_RS05195at 176.942 kb on - strand, within EX31_RS05195at 176.986 kb on + strand, within EX31_RS05195at 177.050 kb on + strand, within EX31_RS05195at 177.075 kb on + strand, within EX31_RS05195at 177.075 kb on + strand, within EX31_RS05195at 177.075 kb on + strand, within EX31_RS05195at 177.075 kb on + strand, within EX31_RS05195at 177.076 kb on - strand, within EX31_RS05195at 177.128 kb on + strand, within EX31_RS05195at 177.129 kb on - strand, within EX31_RS05195at 177.179 kb on + strand, within EX31_RS05195at 177.180 kb on - strand, within EX31_RS05195at 177.221 kb on - strand, within EX31_RS05195at 177.259 kb on + strand, within EX31_RS05195at 177.259 kb on + strand, within EX31_RS05195at 177.260 kb on - strand, within EX31_RS05195at 177.260 kb on - strand, within EX31_RS05195at 177.281 kb on + strand, within EX31_RS05195at 177.281 kb on + strand, within EX31_RS05195at 177.281 kb on + strand, within EX31_RS05195at 177.281 kb on + strand, within EX31_RS05195at 177.281 kb on + strand, within EX31_RS05195at 177.281 kb on + strand, within EX31_RS05195at 177.281 kb on + strand, within EX31_RS05195at 177.281 kb on + strand, within EX31_RS05195at 177.281 kb on + strand, within EX31_RS05195at 177.282 kb on - strand, within EX31_RS05195at 177.282 kb on - strand, within EX31_RS05195at 177.282 kb on - strand, within EX31_RS05195at 177.282 kb on - strand, within EX31_RS05195at 177.302 kb on + strand, within EX31_RS05195at 177.372 kb on + strand, within EX31_RS05195at 177.372 kb on + strand, within EX31_RS05195at 177.373 kb on - strand, within EX31_RS05195at 177.373 kb on - strand, within EX31_RS05195at 177.503 kb on + strand, within EX31_RS05195at 177.504 kb on - strand, within EX31_RS05195at 177.522 kb on + strand, within EX31_RS05195at 177.523 kb on - strand, within EX31_RS05195at 177.523 kb on - strand, within EX31_RS05195at 177.709 kb on + strandat 177.747 kb on + strandat 177.828 kb on + strandat 177.828 kb on + strandat 177.829 kb on - strandat 177.829 kb on - strandat 177.829 kb on - strandat 177.851 kb on + strandat 177.852 kb on - strandat 177.852 kb on - strandat 177.852 kb on - strandat 177.852 kb on - strandat 177.871 kb on + strandat 177.871 kb on + strandat 177.871 kb on + strandat 177.871 kb on + strandat 177.871 kb on + strandat 177.871 kb on + strandat 177.871 kb on + strandat 177.871 kb on + strandat 177.872 kb on - strandat 177.872 kb on - strandat 177.872 kb on - strandat 177.872 kb on - strandat 177.872 kb on - strandat 177.872 kb on - strandat 177.872 kb on - strandat 177.872 kb on - strandat 177.875 kb on + strandat 177.875 kb on + strandat 177.875 kb on + strandat 177.875 kb on + strandat 177.875 kb on + strandat 177.875 kb on + strandat 177.875 kb on + strandat 177.875 kb on + strandat 177.875 kb on + strandat 177.875 kb on + strandat 177.876 kb on - strandat 177.876 kb on - strandat 177.952 kb on + strand, within EX31_RS05200at 177.953 kb on - strand, within EX31_RS05200at 177.966 kb on - strand, within EX31_RS05200at 178.166 kb on - strand, within EX31_RS05200at 178.166 kb on - strand, within EX31_RS05200at 178.166 kb on - strand, within EX31_RS05200at 178.218 kb on - strandat 178.306 kb on + strandat 178.307 kb on - strandat 178.321 kb on - strandat 178.356 kb on + strandat 178.356 kb on + strandat 178.357 kb on - strandat 178.357 kb on - strandat 178.363 kb on - strandat 178.381 kb on - strandat 178.381 kb on - strandat 178.422 kb on + strand, within EX31_RS05205at 178.422 kb on + strand, within EX31_RS05205at 178.422 kb on + strand, within EX31_RS05205at 178.423 kb on - strand, within EX31_RS05205at 178.423 kb on - strand, within EX31_RS05205at 178.423 kb on - strand, within EX31_RS05205at 178.504 kb on + strand, within EX31_RS05205at 178.505 kb on - strand, within EX31_RS05205at 178.505 kb on - strand, within EX31_RS05205at 178.566 kb on + strand, within EX31_RS05205at 178.566 kb on + strand, within EX31_RS05205at 178.566 kb on + strand, within EX31_RS05205at 178.566 kb on + strand, within EX31_RS05205at 178.566 kb on + strand, within EX31_RS05205at 178.566 kb on + strand, within EX31_RS05205at 178.566 kb on + strand, within EX31_RS05205at 178.566 kb on + strand, within EX31_RS05205at 178.567 kb on - strand, within EX31_RS05205at 178.567 kb on - strand, within EX31_RS05205at 178.567 kb on - strand, within EX31_RS05205at 178.567 kb on - strand, within EX31_RS05205at 178.567 kb on - strand, within EX31_RS05205at 178.567 kb on - strand, within EX31_RS05205at 178.567 kb on - strand, within EX31_RS05205at 178.567 kb on - strand, within EX31_RS05205at 178.567 kb on - strand, within EX31_RS05205at 178.567 kb on - strand, within EX31_RS05205at 178.567 kb on - strand, within EX31_RS05205at 178.567 kb on - strand, within EX31_RS05205at 178.567 kb on - strand, within EX31_RS05205at 178.567 kb on - strand, within EX31_RS05205at 178.567 kb on - strand, within EX31_RS05205at 178.575 kb on + strand, within EX31_RS05205at 178.640 kb on - strand, within EX31_RS05205at 178.712 kb on - strand, within EX31_RS05205at 178.712 kb on - strand, within EX31_RS05205at 178.712 kb on - strand, within EX31_RS05205at 178.739 kb on + strand, within EX31_RS05205at 178.739 kb on + strand, within EX31_RS05205at 178.739 kb on + strand, within EX31_RS05205at 178.740 kb on - strand, within EX31_RS05205at 178.749 kb on - strand, within EX31_RS05205at 178.749 kb on - strand, within EX31_RS05205at 178.749 kb on - strand, within EX31_RS05205at 178.762 kb on + strand, within EX31_RS05205at 178.762 kb on + strand, within EX31_RS05205at 178.762 kb on + strand, within EX31_RS05205at 178.762 kb on + strand, within EX31_RS05205at 178.762 kb on + strand, within EX31_RS05205at 178.762 kb on + strand, within EX31_RS05205at 178.762 kb on + strand, within EX31_RS05205at 178.763 kb on - strand, within EX31_RS05205at 178.763 kb on - strand, within EX31_RS05205at 178.763 kb on - strand, within EX31_RS05205at 178.763 kb on - strand, within EX31_RS05205at 178.763 kb on - strand, within EX31_RS05205at 178.764 kb on + strand, within EX31_RS05205at 178.764 kb on + strand, within EX31_RS05205at 178.765 kb on - strand, within EX31_RS05205at 178.765 kb on - strand, within EX31_RS05205at 178.797 kb on + strand, within EX31_RS05205at 178.797 kb on + strand, within EX31_RS05205at 178.797 kb on + strand, within EX31_RS05205at 178.797 kb on + strand, within EX31_RS05205at 178.797 kb on + strand, within EX31_RS05205at 178.798 kb on - strand, within EX31_RS05205at 178.849 kb on + strand, within EX31_RS05205at 178.849 kb on + strand, within EX31_RS05205at 178.849 kb on + strand, within EX31_RS05205at 178.850 kb on - strand, within EX31_RS05205at 178.850 kb on - strand, within EX31_RS05205at 178.873 kb on + strand, within EX31_RS05205at 178.874 kb on - strand, within EX31_RS05205at 179.040 kb on + strandat 179.040 kb on + strandat 179.040 kb on + strandat 179.040 kb on + strandat 179.040 kb on + strandat 179.040 kb on + strandat 179.041 kb on - strandat 179.041 kb on - strandat 179.041 kb on - strandat 179.041 kb on - strandat 179.041 kb on - strandat 179.041 kb on - strandat 179.118 kb on + strandat 179.119 kb on - strandat 179.203 kb on + strandat 179.220 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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176,866 + EX31_RS05195 0.39 -1.3
176,867 - EX31_RS05195 0.39 -1.0
176,870 - EX31_RS05195 0.39 +0.7
176,921 - EX31_RS05195 0.42 -1.3
176,921 - EX31_RS05195 0.42 +1.0
176,941 + EX31_RS05195 0.43 -1.3
176,941 + EX31_RS05195 0.43 +0.5
176,942 - EX31_RS05195 0.43 -2.8
176,942 - EX31_RS05195 0.43 +0.3
176,942 - EX31_RS05195 0.43 -0.3
176,986 + EX31_RS05195 0.46 +0.2
177,050 + EX31_RS05195 0.50 +0.8
177,075 + EX31_RS05195 0.52 +0.4
177,075 + EX31_RS05195 0.52 -0.6
177,075 + EX31_RS05195 0.52 -0.7
177,075 + EX31_RS05195 0.52 -0.8
177,076 - EX31_RS05195 0.52 +0.9
177,128 + EX31_RS05195 0.55 +0.7
177,129 - EX31_RS05195 0.55 -0.5
177,179 + EX31_RS05195 0.58 +0.2
177,180 - EX31_RS05195 0.58 +0.6
177,221 - EX31_RS05195 0.61 +0.8
177,259 + EX31_RS05195 0.63 -0.3
177,259 + EX31_RS05195 0.63 -0.4
177,260 - EX31_RS05195 0.63 -1.0
177,260 - EX31_RS05195 0.63 -2.2
177,281 + EX31_RS05195 0.65 -1.7
177,281 + EX31_RS05195 0.65 -0.0
177,281 + EX31_RS05195 0.65 -0.4
177,281 + EX31_RS05195 0.65 -1.5
177,281 + EX31_RS05195 0.65 -0.3
177,281 + EX31_RS05195 0.65 -0.1
177,281 + EX31_RS05195 0.65 -0.8
177,281 + EX31_RS05195 0.65 -0.1
177,281 + EX31_RS05195 0.65 +0.0
177,282 - EX31_RS05195 0.65 -3.3
177,282 - EX31_RS05195 0.65 -0.3
177,282 - EX31_RS05195 0.65 -1.9
177,282 - EX31_RS05195 0.65 +0.8
177,302 + EX31_RS05195 0.66 -1.5
177,372 + EX31_RS05195 0.70 -0.5
177,372 + EX31_RS05195 0.70 +1.6
177,373 - EX31_RS05195 0.71 -0.1
177,373 - EX31_RS05195 0.71 +0.2
177,503 + EX31_RS05195 0.79 +0.6
177,504 - EX31_RS05195 0.79 +1.0
177,522 + EX31_RS05195 0.80 +0.2
177,523 - EX31_RS05195 0.80 -1.7
177,523 - EX31_RS05195 0.80 +0.6
177,709 + +0.6
177,747 + -0.2
177,828 + +0.3
177,828 + -0.3
177,829 - -0.2
177,829 - +0.3
177,829 - -0.1
177,851 + -0.8
177,852 - -0.7
177,852 - +0.0
177,852 - +0.4
177,852 - -0.1
177,871 + -0.5
177,871 + +0.2
177,871 + +0.3
177,871 + -0.1
177,871 + -0.9
177,871 + -0.6
177,871 + -0.8
177,871 + +0.0
177,872 - +1.6
177,872 - +0.6
177,872 - +1.6
177,872 - +0.9
177,872 - -0.5
177,872 - -1.7
177,872 - -0.3
177,872 - -0.5
177,875 + +0.2
177,875 + +0.5
177,875 + +1.3
177,875 + +1.0
177,875 + -0.3
177,875 + -0.8
177,875 + -1.7
177,875 + -1.0
177,875 + +0.9
177,875 + -0.2
177,876 - +1.1
177,876 - +0.0
177,952 + EX31_RS05200 0.27 +0.3
177,953 - EX31_RS05200 0.28 -0.8
177,966 - EX31_RS05200 0.31 +0.1
178,166 - EX31_RS05200 0.78 -2.6
178,166 - EX31_RS05200 0.78 -1.7
178,166 - EX31_RS05200 0.78 -0.4
178,218 - -0.2
178,306 + -0.8
178,307 - -1.6
178,321 - +0.3
178,356 + -0.5
178,356 + -0.1
178,357 - +0.3
178,357 - +0.4
178,363 - -1.2
178,381 - -0.8
178,381 - +0.6
178,422 + EX31_RS05205 0.16 -1.1
178,422 + EX31_RS05205 0.16 +1.3
178,422 + EX31_RS05205 0.16 -0.1
178,423 - EX31_RS05205 0.16 -0.2
178,423 - EX31_RS05205 0.16 -0.7
178,423 - EX31_RS05205 0.16 +0.6
178,504 + EX31_RS05205 0.29 -0.6
178,505 - EX31_RS05205 0.29 +0.1
178,505 - EX31_RS05205 0.29 +0.4
178,566 + EX31_RS05205 0.38 +1.0
178,566 + EX31_RS05205 0.38 -0.3
178,566 + EX31_RS05205 0.38 -1.3
178,566 + EX31_RS05205 0.38 -0.3
178,566 + EX31_RS05205 0.38 -0.4
178,566 + EX31_RS05205 0.38 +0.7
178,566 + EX31_RS05205 0.38 +0.3
178,566 + EX31_RS05205 0.38 +1.3
178,567 - EX31_RS05205 0.39 +1.0
178,567 - EX31_RS05205 0.39 -0.3
178,567 - EX31_RS05205 0.39 +0.3
178,567 - EX31_RS05205 0.39 -2.1
178,567 - EX31_RS05205 0.39 -0.0
178,567 - EX31_RS05205 0.39 -0.6
178,567 - EX31_RS05205 0.39 -0.2
178,567 - EX31_RS05205 0.39 +1.5
178,567 - EX31_RS05205 0.39 -1.5
178,567 - EX31_RS05205 0.39 -0.1
178,567 - EX31_RS05205 0.39 -0.7
178,567 - EX31_RS05205 0.39 +0.1
178,567 - EX31_RS05205 0.39 -0.7
178,567 - EX31_RS05205 0.39 -1.2
178,567 - EX31_RS05205 0.39 -0.1
178,575 + EX31_RS05205 0.40 -2.0
178,640 - EX31_RS05205 0.50 +0.4
178,712 - EX31_RS05205 0.61 +0.7
178,712 - EX31_RS05205 0.61 +0.1
178,712 - EX31_RS05205 0.61 +0.7
178,739 + EX31_RS05205 0.65 -1.3
178,739 + EX31_RS05205 0.65 -0.7
178,739 + EX31_RS05205 0.65 -0.0
178,740 - EX31_RS05205 0.66 +0.1
178,749 - EX31_RS05205 0.67 +0.9
178,749 - EX31_RS05205 0.67 +0.6
178,749 - EX31_RS05205 0.67 -0.5
178,762 + EX31_RS05205 0.69 +0.6
178,762 + EX31_RS05205 0.69 -0.7
178,762 + EX31_RS05205 0.69 +0.2
178,762 + EX31_RS05205 0.69 +0.3
178,762 + EX31_RS05205 0.69 -0.0
178,762 + EX31_RS05205 0.69 -1.5
178,762 + EX31_RS05205 0.69 +1.0
178,763 - EX31_RS05205 0.69 +0.4
178,763 - EX31_RS05205 0.69 +0.1
178,763 - EX31_RS05205 0.69 +0.3
178,763 - EX31_RS05205 0.69 +0.7
178,763 - EX31_RS05205 0.69 +0.2
178,764 + EX31_RS05205 0.69 +1.6
178,764 + EX31_RS05205 0.69 +0.5
178,765 - EX31_RS05205 0.69 -0.6
178,765 - EX31_RS05205 0.69 +0.2
178,797 + EX31_RS05205 0.74 -0.8
178,797 + EX31_RS05205 0.74 -0.5
178,797 + EX31_RS05205 0.74 +0.1
178,797 + EX31_RS05205 0.74 -2.0
178,797 + EX31_RS05205 0.74 -0.1
178,798 - EX31_RS05205 0.75 +1.0
178,849 + EX31_RS05205 0.83 +0.6
178,849 + EX31_RS05205 0.83 -0.0
178,849 + EX31_RS05205 0.83 -0.4
178,850 - EX31_RS05205 0.83 -0.3
178,850 - EX31_RS05205 0.83 -0.1
178,873 + EX31_RS05205 0.86 +0.1
178,874 - EX31_RS05205 0.86 +0.3
179,040 + -1.9
179,040 + +0.3
179,040 + +1.3
179,040 + +0.8
179,040 + -0.2
179,040 + +0.1
179,041 - -0.0
179,041 - +0.8
179,041 - +0.3
179,041 - +1.3
179,041 - -0.5
179,041 - -0.2
179,118 + -0.2
179,119 - +0.3
179,203 + +0.6
179,220 + +1.2

Or see this region's nucleotide sequence