Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02735 and EX31_RS02740 are separated by 33 nucleotides EX31_RS02740 and EX31_RS02745 are separated by 76 nucleotides
EX31_RS02735: EX31_RS02735 - A/G-specific adenine glycosylase, at 16,865 to 17,941
_RS02735
EX31_RS02740: EX31_RS02740 - oxidative damage protection protein, at 17,975 to 18,247
_RS02740
EX31_RS02745: EX31_RS02745 - membrane-bound lytic murein transglycosylase MltC, at 18,324 to 19,403
_RS02745
Position (kb) 17
18
19 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 16.978 kb on + strand, within EX31_RS02735 at 16.979 kb on - strand, within EX31_RS02735 at 16.979 kb on - strand, within EX31_RS02735 at 16.979 kb on - strand, within EX31_RS02735 at 16.979 kb on - strand, within EX31_RS02735 at 16.979 kb on - strand, within EX31_RS02735 at 17.037 kb on - strand, within EX31_RS02735 at 17.103 kb on + strand, within EX31_RS02735 at 17.103 kb on + strand, within EX31_RS02735 at 17.104 kb on - strand, within EX31_RS02735 at 17.104 kb on - strand, within EX31_RS02735 at 17.132 kb on + strand, within EX31_RS02735 at 17.132 kb on + strand, within EX31_RS02735 at 17.132 kb on + strand, within EX31_RS02735 at 17.155 kb on + strand, within EX31_RS02735 at 17.155 kb on + strand, within EX31_RS02735 at 17.156 kb on - strand, within EX31_RS02735 at 17.170 kb on + strand, within EX31_RS02735 at 17.170 kb on + strand, within EX31_RS02735 at 17.170 kb on + strand, within EX31_RS02735 at 17.170 kb on + strand, within EX31_RS02735 at 17.171 kb on - strand, within EX31_RS02735 at 17.194 kb on - strand, within EX31_RS02735 at 17.285 kb on + strand, within EX31_RS02735 at 17.286 kb on - strand, within EX31_RS02735 at 17.330 kb on + strand, within EX31_RS02735 at 17.371 kb on + strand, within EX31_RS02735 at 17.487 kb on + strand, within EX31_RS02735 at 17.487 kb on + strand, within EX31_RS02735 at 17.487 kb on + strand, within EX31_RS02735 at 17.487 kb on + strand, within EX31_RS02735 at 17.487 kb on + strand, within EX31_RS02735 at 17.487 kb on + strand, within EX31_RS02735 at 17.487 kb on + strand, within EX31_RS02735 at 17.487 kb on + strand, within EX31_RS02735 at 17.488 kb on - strand, within EX31_RS02735 at 17.488 kb on - strand, within EX31_RS02735 at 17.488 kb on - strand, within EX31_RS02735 at 17.488 kb on - strand, within EX31_RS02735 at 17.488 kb on - strand, within EX31_RS02735 at 17.488 kb on - strand, within EX31_RS02735 at 17.516 kb on + strand, within EX31_RS02735 at 17.516 kb on + strand, within EX31_RS02735 at 17.516 kb on + strand, within EX31_RS02735 at 17.516 kb on + strand, within EX31_RS02735 at 17.516 kb on + strand, within EX31_RS02735 at 17.516 kb on + strand, within EX31_RS02735 at 17.517 kb on - strand, within EX31_RS02735 at 17.517 kb on - strand, within EX31_RS02735 at 17.588 kb on - strand, within EX31_RS02735 at 17.588 kb on - strand, within EX31_RS02735 at 17.802 kb on + strand, within EX31_RS02735 at 17.852 kb on + strand at 17.853 kb on - strand at 17.853 kb on - strand at 17.854 kb on + strand at 17.854 kb on + strand at 17.854 kb on + strand at 17.854 kb on + strand at 17.854 kb on + strand at 17.855 kb on - strand at 17.860 kb on - strand at 17.860 kb on - strand at 17.916 kb on + strand at 17.916 kb on + strand at 17.916 kb on + strand at 17.917 kb on - strand at 17.917 kb on - strand at 17.939 kb on + strand at 17.940 kb on - strand at 17.971 kb on + strand at 17.971 kb on + strand at 17.972 kb on - strand at 17.972 kb on - strand at 18.061 kb on + strand, within EX31_RS02740 at 18.062 kb on - strand, within EX31_RS02740 at 18.163 kb on + strand, within EX31_RS02740 at 18.245 kb on + strand at 18.255 kb on + strand at 18.255 kb on + strand at 18.255 kb on + strand at 18.274 kb on - strand at 18.320 kb on + strand at 18.320 kb on + strand at 18.320 kb on + strand at 18.320 kb on + strand at 18.321 kb on - strand at 18.321 kb on - strand at 18.321 kb on - strand at 18.321 kb on - strand at 18.384 kb on - strand at 18.408 kb on + strand at 18.408 kb on + strand at 18.408 kb on + strand at 18.408 kb on + strand at 18.408 kb on + strand at 18.408 kb on + strand at 18.409 kb on - strand at 18.409 kb on - strand at 18.409 kb on - strand at 18.409 kb on - strand at 18.409 kb on - strand at 18.409 kb on - strand at 18.409 kb on - strand at 18.409 kb on - strand at 18.419 kb on + strand at 18.419 kb on + strand at 18.420 kb on - strand at 18.420 kb on - strand at 18.420 kb on - strand at 18.420 kb on - strand at 18.481 kb on + strand, within EX31_RS02745 at 18.482 kb on - strand, within EX31_RS02745 at 18.482 kb on - strand, within EX31_RS02745 at 18.482 kb on - strand, within EX31_RS02745 at 18.514 kb on - strand, within EX31_RS02745 at 18.522 kb on + strand, within EX31_RS02745 at 18.522 kb on + strand, within EX31_RS02745 at 18.522 kb on + strand, within EX31_RS02745 at 18.522 kb on + strand, within EX31_RS02745 at 18.523 kb on - strand, within EX31_RS02745 at 18.523 kb on - strand, within EX31_RS02745 at 18.523 kb on - strand, within EX31_RS02745 at 18.534 kb on + strand, within EX31_RS02745 at 18.534 kb on + strand, within EX31_RS02745 at 18.534 kb on + strand, within EX31_RS02745 at 18.534 kb on + strand, within EX31_RS02745 at 18.535 kb on - strand, within EX31_RS02745 at 18.537 kb on + strand, within EX31_RS02745 at 18.537 kb on + strand, within EX31_RS02745 at 18.537 kb on + strand, within EX31_RS02745 at 18.537 kb on + strand, within EX31_RS02745 at 18.537 kb on + strand, within EX31_RS02745 at 18.538 kb on - strand, within EX31_RS02745 at 18.538 kb on - strand, within EX31_RS02745 at 18.621 kb on - strand, within EX31_RS02745 at 18.629 kb on + strand, within EX31_RS02745 at 18.640 kb on + strand, within EX31_RS02745 at 18.676 kb on - strand, within EX31_RS02745 at 18.718 kb on + strand, within EX31_RS02745 at 18.718 kb on + strand, within EX31_RS02745 at 18.718 kb on + strand, within EX31_RS02745 at 18.718 kb on + strand, within EX31_RS02745 at 18.719 kb on - strand, within EX31_RS02745 at 18.720 kb on + strand, within EX31_RS02745 at 18.720 kb on + strand, within EX31_RS02745 at 18.720 kb on + strand, within EX31_RS02745 at 18.720 kb on + strand, within EX31_RS02745 at 18.721 kb on - strand, within EX31_RS02745 at 18.721 kb on - strand, within EX31_RS02745 at 18.721 kb on - strand, within EX31_RS02745 at 18.721 kb on - strand, within EX31_RS02745 at 18.721 kb on - strand, within EX31_RS02745 at 18.721 kb on - strand, within EX31_RS02745 at 18.721 kb on - strand, within EX31_RS02745 at 18.721 kb on - strand, within EX31_RS02745 at 18.721 kb on - strand, within EX31_RS02745 at 18.803 kb on + strand, within EX31_RS02745 at 18.804 kb on - strand, within EX31_RS02745 at 18.840 kb on + strand, within EX31_RS02745 at 18.840 kb on + strand, within EX31_RS02745 at 18.891 kb on - strand, within EX31_RS02745 at 18.891 kb on - strand, within EX31_RS02745 at 18.891 kb on - strand, within EX31_RS02745 at 18.894 kb on + strand, within EX31_RS02745 at 18.894 kb on + strand, within EX31_RS02745 at 18.894 kb on + strand, within EX31_RS02745 at 18.895 kb on - strand, within EX31_RS02745 at 18.895 kb on - strand, within EX31_RS02745 at 18.895 kb on - strand, within EX31_RS02745 at 18.927 kb on + strand, within EX31_RS02745 at 18.928 kb on - strand, within EX31_RS02745 at 18.928 kb on - strand, within EX31_RS02745 at 18.950 kb on - strand, within EX31_RS02745 at 18.980 kb on + strand, within EX31_RS02745 at 19.095 kb on + strand, within EX31_RS02745 at 19.121 kb on + strand, within EX31_RS02745 at 19.161 kb on + strand, within EX31_RS02745 at 19.161 kb on + strand, within EX31_RS02745 at 19.161 kb on + strand, within EX31_RS02745 at 19.161 kb on + strand, within EX31_RS02745 at 19.161 kb on + strand, within EX31_RS02745 at 19.197 kb on + strand, within EX31_RS02745 at 19.208 kb on + strand, within EX31_RS02745 at 19.208 kb on + strand, within EX31_RS02745 at 19.209 kb on - strand, within EX31_RS02745 at 19.215 kb on + strand, within EX31_RS02745 at 19.215 kb on + strand, within EX31_RS02745 at 19.215 kb on + strand, within EX31_RS02745 at 19.215 kb on + strand, within EX31_RS02745 at 19.215 kb on + strand, within EX31_RS02745 at 19.216 kb on - strand, within EX31_RS02745 at 19.216 kb on - strand, within EX31_RS02745 at 19.217 kb on + strand, within EX31_RS02745 at 19.217 kb on + strand, within EX31_RS02745 at 19.217 kb on + strand, within EX31_RS02745 at 19.217 kb on + strand, within EX31_RS02745 at 19.217 kb on + strand, within EX31_RS02745 at 19.217 kb on + strand, within EX31_RS02745 at 19.217 kb on + strand, within EX31_RS02745 at 19.217 kb on + strand, within EX31_RS02745 at 19.217 kb on + strand, within EX31_RS02745 at 19.217 kb on + strand, within EX31_RS02745 at 19.218 kb on - strand, within EX31_RS02745 at 19.218 kb on - strand, within EX31_RS02745 at 19.218 kb on - strand, within EX31_RS02745
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 16,978 + EX31_RS02735 0.10 -0.4 16,979 - EX31_RS02735 0.11 +0.5 16,979 - EX31_RS02735 0.11 +0.5 16,979 - EX31_RS02735 0.11 +0.0 16,979 - EX31_RS02735 0.11 -1.0 16,979 - EX31_RS02735 0.11 -0.9 17,037 - EX31_RS02735 0.16 +0.4 17,103 + EX31_RS02735 0.22 -1.7 17,103 + EX31_RS02735 0.22 +0.6 17,104 - EX31_RS02735 0.22 +0.2 17,104 - EX31_RS02735 0.22 +0.2 17,132 + EX31_RS02735 0.25 -1.0 17,132 + EX31_RS02735 0.25 +0.1 17,132 + EX31_RS02735 0.25 -1.0 17,155 + EX31_RS02735 0.27 -0.4 17,155 + EX31_RS02735 0.27 +0.9 17,156 - EX31_RS02735 0.27 +0.8 17,170 + EX31_RS02735 0.28 +0.2 17,170 + EX31_RS02735 0.28 -0.7 17,170 + EX31_RS02735 0.28 -0.3 17,170 + EX31_RS02735 0.28 -0.3 17,171 - EX31_RS02735 0.28 +0.0 17,194 - EX31_RS02735 0.31 +0.2 17,285 + EX31_RS02735 0.39 -0.2 17,286 - EX31_RS02735 0.39 +0.3 17,330 + EX31_RS02735 0.43 -0.1 17,371 + EX31_RS02735 0.47 +0.4 17,487 + EX31_RS02735 0.58 -0.6 17,487 + EX31_RS02735 0.58 -0.1 17,487 + EX31_RS02735 0.58 -0.2 17,487 + EX31_RS02735 0.58 +0.7 17,487 + EX31_RS02735 0.58 -1.0 17,487 + EX31_RS02735 0.58 -0.1 17,487 + EX31_RS02735 0.58 -0.8 17,487 + EX31_RS02735 0.58 +0.3 17,488 - EX31_RS02735 0.58 +0.4 17,488 - EX31_RS02735 0.58 +0.7 17,488 - EX31_RS02735 0.58 -0.2 17,488 - EX31_RS02735 0.58 +1.7 17,488 - EX31_RS02735 0.58 +1.0 17,488 - EX31_RS02735 0.58 +0.1 17,516 + EX31_RS02735 0.60 -0.5 17,516 + EX31_RS02735 0.60 -0.9 17,516 + EX31_RS02735 0.60 +0.4 17,516 + EX31_RS02735 0.60 -0.2 17,516 + EX31_RS02735 0.60 -0.1 17,516 + EX31_RS02735 0.60 +0.3 17,517 - EX31_RS02735 0.61 +0.2 17,517 - EX31_RS02735 0.61 +1.9 17,588 - EX31_RS02735 0.67 +0.6 17,588 - EX31_RS02735 0.67 -0.4 17,802 + EX31_RS02735 0.87 +0.4 17,852 + -1.1 17,853 - +0.7 17,853 - +0.2 17,854 + +0.1 17,854 + +0.4 17,854 + -0.8 17,854 + -0.0 17,854 + -0.6 17,855 - +0.0 17,860 - -0.2 17,860 - +0.7 17,916 + -0.1 17,916 + +0.2 17,916 + +0.3 17,917 - +1.5 17,917 - +0.1 17,939 + -0.6 17,940 - -2.7 17,971 + +0.0 17,971 + +1.3 17,972 - -0.8 17,972 - -0.0 18,061 + EX31_RS02740 0.32 -2.8 18,062 - EX31_RS02740 0.32 -1.8 18,163 + EX31_RS02740 0.69 +0.8 18,245 + -0.5 18,255 + -0.4 18,255 + -0.7 18,255 + +0.9 18,274 - +0.6 18,320 + +1.0 18,320 + +0.6 18,320 + +0.0 18,320 + -0.9 18,321 - +0.6 18,321 - -0.3 18,321 - +0.0 18,321 - +0.5 18,384 - +0.8 18,408 + +0.3 18,408 + -0.6 18,408 + +1.7 18,408 + +0.5 18,408 + +0.4 18,408 + +1.4 18,409 - +1.1 18,409 - +1.0 18,409 - +0.5 18,409 - +1.2 18,409 - +0.4 18,409 - -0.0 18,409 - +0.1 18,409 - +1.5 18,419 + +0.1 18,419 + -0.7 18,420 - -1.0 18,420 - +2.1 18,420 - +0.9 18,420 - -2.1 18,481 + EX31_RS02745 0.15 -0.2 18,482 - EX31_RS02745 0.15 +0.6 18,482 - EX31_RS02745 0.15 +0.6 18,482 - EX31_RS02745 0.15 -3.6 18,514 - EX31_RS02745 0.18 -0.3 18,522 + EX31_RS02745 0.18 +0.8 18,522 + EX31_RS02745 0.18 +0.2 18,522 + EX31_RS02745 0.18 -0.0 18,522 + EX31_RS02745 0.18 +0.1 18,523 - EX31_RS02745 0.18 +1.2 18,523 - EX31_RS02745 0.18 -0.8 18,523 - EX31_RS02745 0.18 +1.3 18,534 + EX31_RS02745 0.19 +0.5 18,534 + EX31_RS02745 0.19 -2.1 18,534 + EX31_RS02745 0.19 +1.2 18,534 + EX31_RS02745 0.19 +0.9 18,535 - EX31_RS02745 0.20 -0.2 18,537 + EX31_RS02745 0.20 -0.1 18,537 + EX31_RS02745 0.20 +1.3 18,537 + EX31_RS02745 0.20 +1.4 18,537 + EX31_RS02745 0.20 +0.2 18,537 + EX31_RS02745 0.20 +2.0 18,538 - EX31_RS02745 0.20 +0.3 18,538 - EX31_RS02745 0.20 +1.4 18,621 - EX31_RS02745 0.28 -0.4 18,629 + EX31_RS02745 0.28 +0.2 18,640 + EX31_RS02745 0.29 -0.4 18,676 - EX31_RS02745 0.33 -0.2 18,718 + EX31_RS02745 0.36 +0.6 18,718 + EX31_RS02745 0.36 +1.6 18,718 + EX31_RS02745 0.36 +1.4 18,718 + EX31_RS02745 0.36 -0.6 18,719 - EX31_RS02745 0.37 +1.2 18,720 + EX31_RS02745 0.37 -0.2 18,720 + EX31_RS02745 0.37 -1.1 18,720 + EX31_RS02745 0.37 +1.2 18,720 + EX31_RS02745 0.37 +0.1 18,721 - EX31_RS02745 0.37 -0.2 18,721 - EX31_RS02745 0.37 +0.9 18,721 - EX31_RS02745 0.37 -0.0 18,721 - EX31_RS02745 0.37 +0.8 18,721 - EX31_RS02745 0.37 +0.7 18,721 - EX31_RS02745 0.37 -0.0 18,721 - EX31_RS02745 0.37 -0.4 18,721 - EX31_RS02745 0.37 -0.4 18,721 - EX31_RS02745 0.37 +0.2 18,803 + EX31_RS02745 0.44 -0.9 18,804 - EX31_RS02745 0.44 -1.9 18,840 + EX31_RS02745 0.48 +0.1 18,840 + EX31_RS02745 0.48 +0.4 18,891 - EX31_RS02745 0.53 +1.3 18,891 - EX31_RS02745 0.53 +0.3 18,891 - EX31_RS02745 0.53 +0.6 18,894 + EX31_RS02745 0.53 +0.4 18,894 + EX31_RS02745 0.53 -0.8 18,894 + EX31_RS02745 0.53 +0.4 18,895 - EX31_RS02745 0.53 +0.4 18,895 - EX31_RS02745 0.53 +1.4 18,895 - EX31_RS02745 0.53 +0.4 18,927 + EX31_RS02745 0.56 +0.3 18,928 - EX31_RS02745 0.56 +0.6 18,928 - EX31_RS02745 0.56 +0.5 18,950 - EX31_RS02745 0.58 -1.3 18,980 + EX31_RS02745 0.61 +0.4 19,095 + EX31_RS02745 0.71 -0.7 19,121 + EX31_RS02745 0.74 +0.4 19,161 + EX31_RS02745 0.78 +0.7 19,161 + EX31_RS02745 0.78 -0.1 19,161 + EX31_RS02745 0.78 +0.7 19,161 + EX31_RS02745 0.78 -3.4 19,161 + EX31_RS02745 0.78 +0.4 19,197 + EX31_RS02745 0.81 -0.1 19,208 + EX31_RS02745 0.82 +0.9 19,208 + EX31_RS02745 0.82 +0.2 19,209 - EX31_RS02745 0.82 +0.2 19,215 + EX31_RS02745 0.82 +0.0 19,215 + EX31_RS02745 0.82 +0.7 19,215 + EX31_RS02745 0.82 +0.0 19,215 + EX31_RS02745 0.82 +0.5 19,215 + EX31_RS02745 0.82 +1.1 19,216 - EX31_RS02745 0.83 -0.7 19,216 - EX31_RS02745 0.83 +0.9 19,217 + EX31_RS02745 0.83 +1.2 19,217 + EX31_RS02745 0.83 +0.9 19,217 + EX31_RS02745 0.83 -0.3 19,217 + EX31_RS02745 0.83 +0.2 19,217 + EX31_RS02745 0.83 -0.9 19,217 + EX31_RS02745 0.83 -1.0 19,217 + EX31_RS02745 0.83 +1.0 19,217 + EX31_RS02745 0.83 +0.1 19,217 + EX31_RS02745 0.83 +1.0 19,217 + EX31_RS02745 0.83 +0.0 19,218 - EX31_RS02745 0.83 +0.6 19,218 - EX31_RS02745 0.83 -1.3 19,218 - EX31_RS02745 0.83 +0.8
Or see this region's nucleotide sequence