Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02575 and EX31_RS02580 overlap by 1 nucleotides EX31_RS02580 and EX31_RS02585 overlap by 4 nucleotides EX31_RS02585 and EX31_RS02590 are separated by 4 nucleotides EX31_RS02590 and EX31_RS02595 overlap by 4 nucleotides
EX31_RS02575: EX31_RS02575 - ABC transporter permease, at 546,832 to 547,749
_RS02575
EX31_RS02580: EX31_RS02580 - ABC transporter permease, at 547,749 to 548,723
_RS02580
EX31_RS02585: EX31_RS02585 - nucleoside hydrolase, at 548,720 to 549,682
_RS02585
EX31_RS02590: EX31_RS02590 - nucleoside hydrolase, at 549,687 to 550,637
_RS02590
EX31_RS02595: EX31_RS02595 - dihydrodipicolinate synthase family protein, at 550,634 to 551,518
_RS02595
Position (kb) 548
549
550 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 547.792 kb on + strand at 547.792 kb on + strand at 547.792 kb on + strand at 547.792 kb on + strand at 547.792 kb on + strand at 547.792 kb on + strand at 547.793 kb on - strand at 547.815 kb on - strand at 547.849 kb on + strand, within EX31_RS02580 at 547.921 kb on + strand, within EX31_RS02580 at 547.922 kb on - strand, within EX31_RS02580 at 547.938 kb on + strand, within EX31_RS02580 at 548.010 kb on + strand, within EX31_RS02580 at 548.011 kb on - strand, within EX31_RS02580 at 548.040 kb on + strand, within EX31_RS02580 at 548.373 kb on + strand, within EX31_RS02580 at 548.445 kb on - strand, within EX31_RS02580 at 548.445 kb on - strand, within EX31_RS02580 at 548.445 kb on - strand, within EX31_RS02580 at 548.479 kb on + strand, within EX31_RS02580 at 548.492 kb on + strand, within EX31_RS02580 at 548.641 kb on + strand at 548.857 kb on - strand, within EX31_RS02585 at 548.862 kb on + strand, within EX31_RS02585 at 548.863 kb on - strand, within EX31_RS02585 at 548.863 kb on - strand, within EX31_RS02585 at 549.013 kb on + strand, within EX31_RS02585 at 549.014 kb on - strand, within EX31_RS02585 at 549.014 kb on - strand, within EX31_RS02585 at 549.017 kb on + strand, within EX31_RS02585 at 549.018 kb on - strand, within EX31_RS02585 at 549.028 kb on + strand, within EX31_RS02585 at 549.028 kb on + strand, within EX31_RS02585 at 549.028 kb on + strand, within EX31_RS02585 at 549.029 kb on - strand, within EX31_RS02585 at 549.029 kb on - strand, within EX31_RS02585 at 549.029 kb on - strand, within EX31_RS02585 at 549.029 kb on - strand, within EX31_RS02585 at 549.029 kb on - strand, within EX31_RS02585 at 549.059 kb on + strand, within EX31_RS02585 at 549.060 kb on - strand, within EX31_RS02585 at 549.060 kb on - strand, within EX31_RS02585 at 549.139 kb on + strand, within EX31_RS02585 at 549.172 kb on - strand, within EX31_RS02585 at 549.290 kb on - strand, within EX31_RS02585 at 549.290 kb on - strand, within EX31_RS02585 at 549.350 kb on + strand, within EX31_RS02585 at 549.350 kb on + strand, within EX31_RS02585 at 549.350 kb on + strand, within EX31_RS02585 at 549.351 kb on - strand, within EX31_RS02585 at 549.444 kb on + strand, within EX31_RS02585 at 549.444 kb on + strand, within EX31_RS02585 at 549.444 kb on + strand, within EX31_RS02585 at 549.445 kb on - strand, within EX31_RS02585 at 549.445 kb on - strand, within EX31_RS02585 at 549.445 kb on - strand, within EX31_RS02585 at 549.689 kb on - strand at 549.819 kb on - strand, within EX31_RS02590 at 549.819 kb on - strand, within EX31_RS02590 at 549.819 kb on - strand, within EX31_RS02590 at 549.889 kb on + strand, within EX31_RS02590 at 549.889 kb on + strand, within EX31_RS02590 at 549.890 kb on - strand, within EX31_RS02590 at 549.890 kb on - strand, within EX31_RS02590 at 549.890 kb on - strand, within EX31_RS02590 at 549.890 kb on - strand, within EX31_RS02590 at 549.890 kb on - strand, within EX31_RS02590 at 549.969 kb on + strand, within EX31_RS02590 at 549.969 kb on + strand, within EX31_RS02590 at 550.100 kb on + strand, within EX31_RS02590 at 550.101 kb on - strand, within EX31_RS02590 at 550.283 kb on + strand, within EX31_RS02590 at 550.284 kb on - strand, within EX31_RS02590 at 550.284 kb on - strand, within EX31_RS02590 at 550.370 kb on + strand, within EX31_RS02590 at 550.493 kb on + strand, within EX31_RS02590 at 550.493 kb on + strand, within EX31_RS02590 at 550.494 kb on - strand, within EX31_RS02590 at 550.494 kb on - strand, within EX31_RS02590
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 547,792 + +0.9 547,792 + -0.8 547,792 + -1.2 547,792 + -0.1 547,792 + +0.2 547,792 + -0.8 547,793 - +0.1 547,815 - +0.6 547,849 + EX31_RS02580 0.10 +0.4 547,921 + EX31_RS02580 0.18 +1.0 547,922 - EX31_RS02580 0.18 -0.1 547,938 + EX31_RS02580 0.19 +0.1 548,010 + EX31_RS02580 0.27 -0.0 548,011 - EX31_RS02580 0.27 +1.0 548,040 + EX31_RS02580 0.30 +1.2 548,373 + EX31_RS02580 0.64 -0.8 548,445 - EX31_RS02580 0.71 +0.4 548,445 - EX31_RS02580 0.71 +0.5 548,445 - EX31_RS02580 0.71 +0.2 548,479 + EX31_RS02580 0.75 +0.0 548,492 + EX31_RS02580 0.76 +0.3 548,641 + +0.4 548,857 - EX31_RS02585 0.14 -0.7 548,862 + EX31_RS02585 0.15 -2.5 548,863 - EX31_RS02585 0.15 -2.7 548,863 - EX31_RS02585 0.15 +0.1 549,013 + EX31_RS02585 0.30 -0.3 549,014 - EX31_RS02585 0.31 -2.4 549,014 - EX31_RS02585 0.31 -0.1 549,017 + EX31_RS02585 0.31 -0.9 549,018 - EX31_RS02585 0.31 -0.1 549,028 + EX31_RS02585 0.32 +0.2 549,028 + EX31_RS02585 0.32 -0.6 549,028 + EX31_RS02585 0.32 -2.6 549,029 - EX31_RS02585 0.32 -0.3 549,029 - EX31_RS02585 0.32 -2.4 549,029 - EX31_RS02585 0.32 -0.1 549,029 - EX31_RS02585 0.32 -0.7 549,029 - EX31_RS02585 0.32 -0.5 549,059 + EX31_RS02585 0.35 -0.0 549,060 - EX31_RS02585 0.35 +0.4 549,060 - EX31_RS02585 0.35 +0.5 549,139 + EX31_RS02585 0.44 -0.6 549,172 - EX31_RS02585 0.47 -3.4 549,290 - EX31_RS02585 0.59 -0.2 549,290 - EX31_RS02585 0.59 +0.8 549,350 + EX31_RS02585 0.65 -2.2 549,350 + EX31_RS02585 0.65 +0.4 549,350 + EX31_RS02585 0.65 -0.8 549,351 - EX31_RS02585 0.66 -0.1 549,444 + EX31_RS02585 0.75 -1.1 549,444 + EX31_RS02585 0.75 -1.0 549,444 + EX31_RS02585 0.75 +0.3 549,445 - EX31_RS02585 0.75 -1.2 549,445 - EX31_RS02585 0.75 +0.3 549,445 - EX31_RS02585 0.75 -1.4 549,689 - -1.1 549,819 - EX31_RS02590 0.14 -0.2 549,819 - EX31_RS02590 0.14 -1.3 549,819 - EX31_RS02590 0.14 +2.9 549,889 + EX31_RS02590 0.21 +0.4 549,889 + EX31_RS02590 0.21 -0.4 549,890 - EX31_RS02590 0.21 +0.7 549,890 - EX31_RS02590 0.21 +0.7 549,890 - EX31_RS02590 0.21 -0.7 549,890 - EX31_RS02590 0.21 +0.2 549,890 - EX31_RS02590 0.21 +0.3 549,969 + EX31_RS02590 0.30 -2.8 549,969 + EX31_RS02590 0.30 -1.2 550,100 + EX31_RS02590 0.43 -1.2 550,101 - EX31_RS02590 0.44 +1.2 550,283 + EX31_RS02590 0.63 +0.2 550,284 - EX31_RS02590 0.63 -3.2 550,284 - EX31_RS02590 0.63 -0.6 550,370 + EX31_RS02590 0.72 -2.8 550,493 + EX31_RS02590 0.85 -1.2 550,493 + EX31_RS02590 0.85 -0.5 550,494 - EX31_RS02590 0.85 +0.3 550,494 - EX31_RS02590 0.85 +0.4
Or see this region's nucleotide sequence