Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02220 and EX31_RS02225 are separated by 504 nucleotides EX31_RS02225 and EX31_RS02230 are separated by 59 nucleotides
EX31_RS02215: EX31_RS02215 - isopentenyl-diphosphate Delta-isomerase, at 480,801 to 481,334
_RS02215
EX31_RS02220: EX31_RS02220 - adenylate kinase, at 481,287 to 481,823
_RS02220
EX31_RS02225: EX31_RS02225 - hypothetical protein, at 482,328 to 482,585
_RS02225
EX31_RS02230: EX31_RS02230 - SDR family oxidoreductase, at 482,645 to 483,502
_RS02230
Position (kb) 482
483 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 481.434 kb on - strand, within EX31_RS02220 at 481.434 kb on - strand, within EX31_RS02220 at 481.434 kb on - strand, within EX31_RS02220 at 481.434 kb on - strand, within EX31_RS02220 at 481.544 kb on - strand, within EX31_RS02220 at 481.544 kb on - strand, within EX31_RS02220 at 481.545 kb on + strand, within EX31_RS02220 at 481.546 kb on - strand, within EX31_RS02220 at 481.546 kb on - strand, within EX31_RS02220 at 481.546 kb on - strand, within EX31_RS02220 at 481.546 kb on - strand, within EX31_RS02220 at 481.546 kb on - strand, within EX31_RS02220 at 481.546 kb on - strand, within EX31_RS02220 at 481.546 kb on - strand, within EX31_RS02220 at 481.550 kb on + strand, within EX31_RS02220 at 481.551 kb on - strand, within EX31_RS02220 at 481.564 kb on + strand, within EX31_RS02220 at 481.584 kb on - strand, within EX31_RS02220 at 481.613 kb on + strand, within EX31_RS02220 at 481.622 kb on - strand, within EX31_RS02220 at 481.739 kb on + strand, within EX31_RS02220 at 481.739 kb on + strand, within EX31_RS02220 at 481.739 kb on + strand, within EX31_RS02220 at 481.739 kb on + strand, within EX31_RS02220 at 481.739 kb on + strand, within EX31_RS02220 at 481.740 kb on - strand, within EX31_RS02220 at 481.740 kb on - strand, within EX31_RS02220 at 481.742 kb on - strand, within EX31_RS02220 at 481.742 kb on - strand, within EX31_RS02220 at 481.742 kb on - strand, within EX31_RS02220 at 481.749 kb on - strand, within EX31_RS02220 at 481.749 kb on - strand, within EX31_RS02220 at 481.880 kb on + strand at 481.881 kb on - strand at 481.881 kb on - strand at 481.884 kb on - strand at 481.884 kb on - strand at 481.895 kb on + strand at 481.895 kb on + strand at 481.896 kb on - strand at 481.896 kb on - strand at 481.906 kb on + strand at 481.907 kb on - strand at 481.907 kb on - strand at 481.922 kb on - strand at 481.937 kb on + strand at 481.949 kb on + strand at 481.949 kb on + strand at 481.949 kb on + strand at 481.949 kb on + strand at 481.949 kb on + strand at 481.949 kb on + strand at 481.950 kb on - strand at 481.967 kb on + strand at 481.968 kb on - strand at 481.968 kb on - strand at 481.968 kb on - strand at 481.968 kb on - strand at 481.971 kb on - strand at 482.033 kb on - strand at 482.045 kb on + strand at 482.045 kb on + strand at 482.046 kb on - strand at 482.046 kb on - strand at 482.100 kb on + strand at 482.100 kb on + strand at 482.100 kb on + strand at 482.100 kb on + strand at 482.100 kb on + strand at 482.100 kb on + strand at 482.100 kb on + strand at 482.100 kb on + strand at 482.101 kb on - strand at 482.101 kb on - strand at 482.101 kb on - strand at 482.112 kb on + strand at 482.201 kb on + strand at 482.202 kb on - strand at 482.202 kb on - strand at 482.255 kb on + strand at 482.398 kb on + strand, within EX31_RS02225 at 482.462 kb on + strand, within EX31_RS02225 at 482.462 kb on + strand, within EX31_RS02225 at 482.465 kb on + strand, within EX31_RS02225 at 482.465 kb on + strand, within EX31_RS02225 at 482.519 kb on + strand, within EX31_RS02225 at 482.520 kb on - strand, within EX31_RS02225 at 482.542 kb on + strand, within EX31_RS02225 at 482.604 kb on + strand at 482.634 kb on + strand at 482.720 kb on - strand at 482.720 kb on - strand at 482.776 kb on + strand, within EX31_RS02230 at 482.776 kb on + strand, within EX31_RS02230 at 482.777 kb on - strand, within EX31_RS02230 at 482.777 kb on - strand, within EX31_RS02230 at 482.846 kb on - strand, within EX31_RS02230 at 482.846 kb on - strand, within EX31_RS02230 at 482.847 kb on + strand, within EX31_RS02230 at 482.848 kb on - strand, within EX31_RS02230 at 482.983 kb on - strand, within EX31_RS02230 at 483.072 kb on + strand, within EX31_RS02230 at 483.073 kb on - strand, within EX31_RS02230 at 483.073 kb on - strand, within EX31_RS02230 at 483.178 kb on + strand, within EX31_RS02230 at 483.179 kb on - strand, within EX31_RS02230 at 483.521 kb on + strand at 483.537 kb on + strand at 483.537 kb on + strand at 483.538 kb on - strand at 483.579 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 481,434 - EX31_RS02220 0.27 +0.3 481,434 - EX31_RS02220 0.27 -0.3 481,434 - EX31_RS02220 0.27 +0.8 481,434 - EX31_RS02220 0.27 +0.8 481,544 - EX31_RS02220 0.48 -0.2 481,544 - EX31_RS02220 0.48 -0.4 481,545 + EX31_RS02220 0.48 -0.8 481,546 - EX31_RS02220 0.48 +0.7 481,546 - EX31_RS02220 0.48 +0.3 481,546 - EX31_RS02220 0.48 -0.4 481,546 - EX31_RS02220 0.48 -0.1 481,546 - EX31_RS02220 0.48 -0.6 481,546 - EX31_RS02220 0.48 +1.0 481,546 - EX31_RS02220 0.48 -0.1 481,550 + EX31_RS02220 0.49 -1.3 481,551 - EX31_RS02220 0.49 -0.3 481,564 + EX31_RS02220 0.52 -0.2 481,584 - EX31_RS02220 0.55 +0.7 481,613 + EX31_RS02220 0.61 +0.1 481,622 - EX31_RS02220 0.62 -1.9 481,739 + EX31_RS02220 0.84 -0.0 481,739 + EX31_RS02220 0.84 +0.3 481,739 + EX31_RS02220 0.84 -0.0 481,739 + EX31_RS02220 0.84 -0.5 481,739 + EX31_RS02220 0.84 -0.9 481,740 - EX31_RS02220 0.84 +0.7 481,740 - EX31_RS02220 0.84 -0.4 481,742 - EX31_RS02220 0.85 -0.2 481,742 - EX31_RS02220 0.85 +0.1 481,742 - EX31_RS02220 0.85 -1.0 481,749 - EX31_RS02220 0.86 +0.2 481,749 - EX31_RS02220 0.86 +3.0 481,880 + +1.6 481,881 - +0.9 481,881 - +0.8 481,884 - -0.9 481,884 - -2.7 481,895 + +0.6 481,895 + -0.4 481,896 - +2.3 481,896 - +0.6 481,906 + -0.0 481,907 - +1.1 481,907 - +0.0 481,922 - -0.7 481,937 + +1.1 481,949 + -2.2 481,949 + +0.1 481,949 + -0.0 481,949 + -0.0 481,949 + -1.2 481,949 + -2.2 481,950 - -0.3 481,967 + +0.6 481,968 - +1.8 481,968 - +0.4 481,968 - -0.5 481,968 - -1.4 481,971 - -0.1 482,033 - +0.9 482,045 + -0.0 482,045 + -1.0 482,046 - +0.2 482,046 - -2.8 482,100 + +0.7 482,100 + +1.5 482,100 + -0.2 482,100 + -1.7 482,100 + -0.3 482,100 + -0.2 482,100 + +1.5 482,100 + +0.7 482,101 - -0.0 482,101 - -0.7 482,101 - -1.2 482,112 + +0.2 482,201 + +0.1 482,202 - -3.8 482,202 - -1.8 482,255 + -0.1 482,398 + EX31_RS02225 0.27 -0.8 482,462 + EX31_RS02225 0.52 -0.4 482,462 + EX31_RS02225 0.52 +0.1 482,465 + EX31_RS02225 0.53 -1.9 482,465 + EX31_RS02225 0.53 +0.6 482,519 + EX31_RS02225 0.74 -0.5 482,520 - EX31_RS02225 0.74 +0.2 482,542 + EX31_RS02225 0.83 +0.6 482,604 + -0.4 482,634 + +0.7 482,720 - +0.5 482,720 - -1.0 482,776 + EX31_RS02230 0.15 -1.6 482,776 + EX31_RS02230 0.15 +0.3 482,777 - EX31_RS02230 0.15 +0.8 482,777 - EX31_RS02230 0.15 +0.8 482,846 - EX31_RS02230 0.23 -2.6 482,846 - EX31_RS02230 0.23 -0.4 482,847 + EX31_RS02230 0.24 +0.6 482,848 - EX31_RS02230 0.24 -1.5 482,983 - EX31_RS02230 0.39 +0.2 483,072 + EX31_RS02230 0.50 -0.5 483,073 - EX31_RS02230 0.50 -0.2 483,073 - EX31_RS02230 0.50 -1.6 483,178 + EX31_RS02230 0.62 -2.6 483,179 - EX31_RS02230 0.62 -0.9 483,521 + -1.0 483,537 + +0.3 483,537 + +1.4 483,538 - -0.2 483,579 - -0.2
Or see this region's nucleotide sequence