Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS01760 and EX31_RS01765 are separated by 511 nucleotides EX31_RS01765 and EX31_RS01770 are separated by 166 nucleotides EX31_RS01770 and EX31_RS25900 are separated by 112 nucleotides
EX31_RS01760: EX31_RS01760 - hypothetical protein, at 379,892 to 380,287
_RS01760
EX31_RS01765: EX31_RS01765 - hypothetical protein, at 380,799 to 381,008
_RS01765
EX31_RS01770: EX31_RS01770 - hypothetical protein, at 381,175 to 381,411
_RS01770
EX31_RS25900: EX31_RS25900 - hypothetical protein, at 381,524 to 381,772
_RS25900
Position (kb) 381
382 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 380.201 kb on + strand, within EX31_RS01760 at 380.205 kb on + strand, within EX31_RS01760 at 380.205 kb on + strand, within EX31_RS01760 at 380.205 kb on + strand, within EX31_RS01760 at 380.205 kb on + strand, within EX31_RS01760 at 380.205 kb on + strand, within EX31_RS01760 at 380.205 kb on + strand, within EX31_RS01760 at 380.205 kb on + strand, within EX31_RS01760 at 380.205 kb on + strand, within EX31_RS01760 at 380.205 kb on + strand, within EX31_RS01760 at 380.205 kb on + strand, within EX31_RS01760 at 380.245 kb on + strand, within EX31_RS01760 at 380.245 kb on + strand, within EX31_RS01760 at 380.326 kb on + strand at 380.326 kb on + strand at 380.326 kb on + strand at 380.326 kb on + strand at 380.327 kb on - strand at 380.327 kb on - strand at 380.327 kb on - strand at 380.341 kb on + strand at 380.379 kb on - strand at 380.505 kb on - strand at 380.553 kb on + strand at 380.564 kb on - strand at 380.569 kb on - strand at 380.573 kb on - strand at 380.573 kb on - strand at 380.588 kb on + strand at 380.608 kb on - strand at 380.622 kb on - strand at 380.623 kb on + strand at 380.624 kb on - strand at 380.737 kb on + strand at 380.738 kb on - strand at 380.792 kb on + strand at 380.792 kb on + strand at 380.792 kb on + strand at 380.793 kb on - strand at 380.821 kb on + strand, within EX31_RS01765 at 380.845 kb on + strand, within EX31_RS01765 at 380.846 kb on - strand, within EX31_RS01765 at 380.876 kb on + strand, within EX31_RS01765 at 380.957 kb on + strand, within EX31_RS01765 at 380.957 kb on + strand, within EX31_RS01765 at 380.957 kb on + strand, within EX31_RS01765 at 380.957 kb on + strand, within EX31_RS01765 at 380.957 kb on + strand, within EX31_RS01765 at 380.957 kb on + strand, within EX31_RS01765 at 380.958 kb on - strand, within EX31_RS01765 at 381.139 kb on + strand at 381.184 kb on + strand at 381.185 kb on - strand at 381.185 kb on - strand at 381.185 kb on - strand at 381.216 kb on + strand, within EX31_RS01770 at 381.217 kb on - strand, within EX31_RS01770 at 381.252 kb on + strand, within EX31_RS01770 at 381.258 kb on + strand, within EX31_RS01770 at 381.258 kb on + strand, within EX31_RS01770 at 381.258 kb on + strand, within EX31_RS01770 at 381.260 kb on + strand, within EX31_RS01770 at 381.261 kb on - strand, within EX31_RS01770 at 381.261 kb on - strand, within EX31_RS01770 at 381.304 kb on + strand, within EX31_RS01770 at 381.305 kb on - strand, within EX31_RS01770 at 381.373 kb on - strand, within EX31_RS01770 at 381.379 kb on + strand, within EX31_RS01770 at 381.442 kb on - strand at 381.530 kb on - strand at 381.583 kb on - strand, within EX31_RS25900 at 381.780 kb on + strand at 381.805 kb on - strand at 381.825 kb on + strand at 381.825 kb on + strand at 381.825 kb on + strand at 381.832 kb on - strand at 381.832 kb on - strand at 381.868 kb on + strand at 381.869 kb on - strand at 381.876 kb on + strand at 381.924 kb on - strand at 381.949 kb on - strand at 381.949 kb on - strand at 381.949 kb on - strand at 381.949 kb on - strand at 382.006 kb on - strand at 382.078 kb on + strand at 382.092 kb on + strand at 382.221 kb on + strand at 382.221 kb on + strand at 382.221 kb on + strand at 382.221 kb on + strand at 382.221 kb on + strand at 382.221 kb on + strand at 382.221 kb on + strand at 382.221 kb on + strand at 382.221 kb on + strand at 382.281 kb on - strand at 382.321 kb on + strand at 382.380 kb on + strand at 382.381 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 380,201 + EX31_RS01760 0.78 +0.6 380,205 + EX31_RS01760 0.79 +0.2 380,205 + EX31_RS01760 0.79 -0.3 380,205 + EX31_RS01760 0.79 +0.1 380,205 + EX31_RS01760 0.79 +0.2 380,205 + EX31_RS01760 0.79 +0.5 380,205 + EX31_RS01760 0.79 -1.0 380,205 + EX31_RS01760 0.79 -0.3 380,205 + EX31_RS01760 0.79 +0.2 380,205 + EX31_RS01760 0.79 +0.4 380,205 + EX31_RS01760 0.79 +0.6 380,245 + EX31_RS01760 0.89 +0.4 380,245 + EX31_RS01760 0.89 +0.3 380,326 + +0.6 380,326 + -1.2 380,326 + -0.5 380,326 + -0.4 380,327 - +1.2 380,327 - +1.0 380,327 - +0.4 380,341 + -1.9 380,379 - +0.8 380,505 - +0.5 380,553 + -0.4 380,564 - +0.6 380,569 - -0.3 380,573 - -0.2 380,573 - -0.7 380,588 + -0.7 380,608 - -1.0 380,622 - +0.3 380,623 + +0.5 380,624 - +0.3 380,737 + +0.3 380,738 - +1.1 380,792 + +0.3 380,792 + +0.4 380,792 + +0.1 380,793 - -0.6 380,821 + EX31_RS01765 0.10 -0.0 380,845 + EX31_RS01765 0.22 -0.5 380,846 - EX31_RS01765 0.22 -1.3 380,876 + EX31_RS01765 0.37 +0.5 380,957 + EX31_RS01765 0.75 -0.3 380,957 + EX31_RS01765 0.75 +0.8 380,957 + EX31_RS01765 0.75 +0.1 380,957 + EX31_RS01765 0.75 -1.6 380,957 + EX31_RS01765 0.75 -1.2 380,957 + EX31_RS01765 0.75 +0.6 380,958 - EX31_RS01765 0.76 -0.5 381,139 + -1.2 381,184 + -1.6 381,185 - -1.4 381,185 - -0.2 381,185 - +0.8 381,216 + EX31_RS01770 0.17 -0.9 381,217 - EX31_RS01770 0.18 -1.4 381,252 + EX31_RS01770 0.32 -0.4 381,258 + EX31_RS01770 0.35 -1.8 381,258 + EX31_RS01770 0.35 -0.3 381,258 + EX31_RS01770 0.35 +0.7 381,260 + EX31_RS01770 0.36 -1.6 381,261 - EX31_RS01770 0.36 -1.3 381,261 - EX31_RS01770 0.36 +0.6 381,304 + EX31_RS01770 0.54 +1.1 381,305 - EX31_RS01770 0.55 -2.9 381,373 - EX31_RS01770 0.84 -0.9 381,379 + EX31_RS01770 0.86 +0.2 381,442 - +0.2 381,530 - -0.4 381,583 - EX31_RS25900 0.24 +0.4 381,780 + -0.5 381,805 - +0.6 381,825 + -0.4 381,825 + -0.4 381,825 + +0.9 381,832 - -0.7 381,832 - +0.8 381,868 + +1.2 381,869 - +1.1 381,876 + +0.8 381,924 - -3.0 381,949 - -0.1 381,949 - -0.6 381,949 - +0.4 381,949 - -1.1 382,006 - +0.7 382,078 + +1.9 382,092 + +0.0 382,221 + -0.4 382,221 + +0.3 382,221 + +0.8 382,221 + +0.7 382,221 + +0.2 382,221 + +0.7 382,221 + -0.5 382,221 + +0.6 382,221 + -0.2 382,281 - -2.3 382,321 + +0.0 382,380 + +0.7 382,381 - -0.7
Or see this region's nucleotide sequence