Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS00650 and EX31_RS00655 are separated by 7 nucleotides EX31_RS00655 and EX31_RS00660 overlap by 38 nucleotides EX31_RS00660 and EX31_RS00665 overlap by 4 nucleotides
EX31_RS00650: EX31_RS00650 - pyrroloquinoline quinone biosynthesis protein PqqF, at 134,506 to 136,698
_RS00650
EX31_RS00655: EX31_RS00655 - pyrroloquinoline quinone biosynthesis protein PqqE, at 136,706 to 137,863
_RS00655
EX31_RS00660: EX31_RS00660 - pyrroloquinoline quinone biosynthesis peptide chaperone PqqD, at 137,826 to 138,113
_RS00660
EX31_RS00665: EX31_RS00665 - pyrroloquinoline-quinone synthase PqqC, at 138,110 to 138,877
_RS00665
Position (kb) 136
137
138 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 135.757 kb on + strand, within EX31_RS00650 at 135.758 kb on - strand, within EX31_RS00650 at 135.758 kb on - strand, within EX31_RS00650 at 135.792 kb on + strand, within EX31_RS00650 at 135.801 kb on + strand, within EX31_RS00650 at 136.009 kb on + strand, within EX31_RS00650 at 136.157 kb on + strand, within EX31_RS00650 at 136.157 kb on + strand, within EX31_RS00650 at 136.157 kb on + strand, within EX31_RS00650 at 136.420 kb on - strand, within EX31_RS00650 at 136.647 kb on + strand at 136.684 kb on + strand at 136.954 kb on - strand, within EX31_RS00655 at 136.996 kb on + strand, within EX31_RS00655 at 136.997 kb on - strand, within EX31_RS00655 at 136.997 kb on - strand, within EX31_RS00655 at 136.997 kb on - strand, within EX31_RS00655 at 137.130 kb on + strand, within EX31_RS00655 at 137.240 kb on + strand, within EX31_RS00655 at 137.240 kb on + strand, within EX31_RS00655 at 137.240 kb on + strand, within EX31_RS00655 at 137.501 kb on - strand, within EX31_RS00655 at 137.577 kb on + strand, within EX31_RS00655 at 137.578 kb on - strand, within EX31_RS00655 at 137.782 kb on - strand at 137.847 kb on - strand at 138.091 kb on + strand at 138.091 kb on + strand at 138.091 kb on + strand at 138.091 kb on + strand at 138.092 kb on - strand at 138.092 kb on - strand at 138.128 kb on - strand at 138.128 kb on - strand at 138.160 kb on - strand at 138.160 kb on - strand at 138.343 kb on - strand, within EX31_RS00665 at 138.372 kb on + strand, within EX31_RS00665 at 138.373 kb on - strand, within EX31_RS00665 at 138.373 kb on - strand, within EX31_RS00665 at 138.373 kb on - strand, within EX31_RS00665 at 138.373 kb on - strand, within EX31_RS00665 at 138.373 kb on - strand, within EX31_RS00665 at 138.373 kb on - strand, within EX31_RS00665 at 138.479 kb on - strand, within EX31_RS00665 at 138.484 kb on - strand, within EX31_RS00665 at 138.484 kb on - strand, within EX31_RS00665 at 138.484 kb on - strand, within EX31_RS00665 at 138.626 kb on - strand, within EX31_RS00665 at 138.673 kb on + strand, within EX31_RS00665 at 138.674 kb on - strand, within EX31_RS00665 at 138.674 kb on - strand, within EX31_RS00665 at 138.708 kb on + strand, within EX31_RS00665 at 138.711 kb on + strand, within EX31_RS00665 at 138.712 kb on - strand, within EX31_RS00665 at 138.712 kb on - strand, within EX31_RS00665 at 138.712 kb on - strand, within EX31_RS00665 at 138.764 kb on - strand, within EX31_RS00665 at 138.776 kb on - strand, within EX31_RS00665 at 138.776 kb on - strand, within EX31_RS00665 at 138.798 kb on + strand, within EX31_RS00665 at 138.799 kb on - strand, within EX31_RS00665
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 135,757 + EX31_RS00650 0.57 +0.5 135,758 - EX31_RS00650 0.57 +1.4 135,758 - EX31_RS00650 0.57 +0.0 135,792 + EX31_RS00650 0.59 -1.6 135,801 + EX31_RS00650 0.59 -0.2 136,009 + EX31_RS00650 0.69 -0.4 136,157 + EX31_RS00650 0.75 -0.1 136,157 + EX31_RS00650 0.75 +0.0 136,157 + EX31_RS00650 0.75 +0.8 136,420 - EX31_RS00650 0.87 +1.4 136,647 + +1.0 136,684 + +0.8 136,954 - EX31_RS00655 0.21 +0.3 136,996 + EX31_RS00655 0.25 -1.1 136,997 - EX31_RS00655 0.25 -3.0 136,997 - EX31_RS00655 0.25 -1.1 136,997 - EX31_RS00655 0.25 -1.1 137,130 + EX31_RS00655 0.37 -0.3 137,240 + EX31_RS00655 0.46 -0.7 137,240 + EX31_RS00655 0.46 +1.2 137,240 + EX31_RS00655 0.46 -0.2 137,501 - EX31_RS00655 0.69 -0.4 137,577 + EX31_RS00655 0.75 -0.8 137,578 - EX31_RS00655 0.75 -1.4 137,782 - -1.0 137,847 - +1.3 138,091 + +0.3 138,091 + -0.5 138,091 + -1.6 138,091 + +0.4 138,092 - -1.0 138,092 - -0.7 138,128 - -0.4 138,128 - +0.5 138,160 - +0.3 138,160 - +0.6 138,343 - EX31_RS00665 0.30 -2.4 138,372 + EX31_RS00665 0.34 -3.5 138,373 - EX31_RS00665 0.34 -0.9 138,373 - EX31_RS00665 0.34 -1.8 138,373 - EX31_RS00665 0.34 +1.2 138,373 - EX31_RS00665 0.34 +0.7 138,373 - EX31_RS00665 0.34 +0.8 138,373 - EX31_RS00665 0.34 -1.0 138,479 - EX31_RS00665 0.48 +1.1 138,484 - EX31_RS00665 0.49 +0.5 138,484 - EX31_RS00665 0.49 -1.1 138,484 - EX31_RS00665 0.49 +1.1 138,626 - EX31_RS00665 0.67 -0.5 138,673 + EX31_RS00665 0.73 +1.5 138,674 - EX31_RS00665 0.73 -0.6 138,674 - EX31_RS00665 0.73 -0.8 138,708 + EX31_RS00665 0.78 -0.7 138,711 + EX31_RS00665 0.78 +0.8 138,712 - EX31_RS00665 0.78 -0.3 138,712 - EX31_RS00665 0.78 +1.6 138,712 - EX31_RS00665 0.78 +0.6 138,764 - EX31_RS00665 0.85 -0.8 138,776 - EX31_RS00665 0.87 -0.1 138,776 - EX31_RS00665 0.87 +1.2 138,798 + EX31_RS00665 0.90 +0.4 138,799 - EX31_RS00665 0.90 +1.7
Or see this region's nucleotide sequence