Strain Fitness in Rahnella sp. WP5 around EX31_RS00465

Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS00460 and EX31_RS00465 overlap by 1 nucleotidesEX31_RS00465 and EX31_RS00470 are separated by 126 nucleotidesEX31_RS00470 and EX31_RS00475 are separated by 271 nucleotides EX31_RS00460: EX31_RS00460 - multidrug efflux RND transporter permease subunit, at 100,214 to 103,330 _RS00460 EX31_RS00465: EX31_RS00465 - efflux RND transporter periplasmic adaptor subunit, at 103,330 to 104,469 _RS00465 EX31_RS00470: EX31_RS00470 - PadR family transcriptional regulator, at 104,596 to 105,087 _RS00470 EX31_RS00475: EX31_RS00475 - membrane integrity-associated transporter subunit PqiC, at 105,359 to 105,940 _RS00475 Position (kb) 103 104 105Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 102.331 kb on + strand, within EX31_RS00460at 102.332 kb on - strand, within EX31_RS00460at 102.366 kb on + strand, within EX31_RS00460at 102.366 kb on + strand, within EX31_RS00460at 102.390 kb on + strand, within EX31_RS00460at 102.504 kb on + strand, within EX31_RS00460at 102.504 kb on + strand, within EX31_RS00460at 102.504 kb on + strand, within EX31_RS00460at 102.505 kb on - strand, within EX31_RS00460at 102.505 kb on - strand, within EX31_RS00460at 102.505 kb on - strand, within EX31_RS00460at 102.587 kb on - strand, within EX31_RS00460at 102.741 kb on + strand, within EX31_RS00460at 102.742 kb on - strand, within EX31_RS00460at 102.844 kb on + strand, within EX31_RS00460at 102.845 kb on - strand, within EX31_RS00460at 102.845 kb on - strand, within EX31_RS00460at 102.845 kb on - strand, within EX31_RS00460at 102.847 kb on + strand, within EX31_RS00460at 102.848 kb on - strand, within EX31_RS00460at 102.848 kb on - strand, within EX31_RS00460at 102.848 kb on - strand, within EX31_RS00460at 102.895 kb on + strand, within EX31_RS00460at 102.900 kb on + strand, within EX31_RS00460at 102.901 kb on - strand, within EX31_RS00460at 102.962 kb on + strand, within EX31_RS00460at 102.962 kb on + strand, within EX31_RS00460at 102.962 kb on + strand, within EX31_RS00460at 102.963 kb on - strand, within EX31_RS00460at 102.963 kb on - strand, within EX31_RS00460at 103.098 kb on + strandat 103.099 kb on - strandat 103.099 kb on - strandat 103.646 kb on - strand, within EX31_RS00465at 103.780 kb on + strand, within EX31_RS00465at 103.780 kb on + strand, within EX31_RS00465at 103.780 kb on + strand, within EX31_RS00465at 103.780 kb on + strand, within EX31_RS00465at 103.780 kb on + strand, within EX31_RS00465at 103.781 kb on - strand, within EX31_RS00465at 103.781 kb on - strand, within EX31_RS00465at 103.813 kb on - strand, within EX31_RS00465at 103.856 kb on + strand, within EX31_RS00465at 103.856 kb on + strand, within EX31_RS00465at 103.857 kb on - strand, within EX31_RS00465at 103.857 kb on - strand, within EX31_RS00465at 103.857 kb on - strand, within EX31_RS00465at 103.857 kb on - strand, within EX31_RS00465at 104.181 kb on - strand, within EX31_RS00465at 104.181 kb on - strand, within EX31_RS00465at 104.181 kb on - strand, within EX31_RS00465at 104.181 kb on - strand, within EX31_RS00465at 104.191 kb on - strand, within EX31_RS00465at 104.213 kb on + strand, within EX31_RS00465at 104.268 kb on + strand, within EX31_RS00465at 104.416 kb on - strandat 104.447 kb on - strandat 104.497 kb on + strandat 104.583 kb on + strandat 104.600 kb on - strandat 104.634 kb on - strandat 104.634 kb on - strandat 104.638 kb on - strandat 104.654 kb on - strand, within EX31_RS00470at 104.817 kb on - strand, within EX31_RS00470at 104.864 kb on - strand, within EX31_RS00470at 104.898 kb on + strand, within EX31_RS00470at 104.898 kb on + strand, within EX31_RS00470at 104.939 kb on + strand, within EX31_RS00470at 104.939 kb on + strand, within EX31_RS00470at 104.939 kb on + strand, within EX31_RS00470at 104.939 kb on + strand, within EX31_RS00470at 104.940 kb on - strand, within EX31_RS00470at 104.940 kb on - strand, within EX31_RS00470at 104.940 kb on - strand, within EX31_RS00470at 104.940 kb on - strand, within EX31_RS00470at 104.949 kb on + strand, within EX31_RS00470at 104.999 kb on - strand, within EX31_RS00470at 105.064 kb on + strandat 105.125 kb on + strandat 105.126 kb on - strandat 105.127 kb on + strandat 105.335 kb on - strandat 105.335 kb on - strandat 105.335 kb on - strandat 105.436 kb on + strand, within EX31_RS00475at 105.437 kb on - strand, within EX31_RS00475

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
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102,331 + EX31_RS00460 0.68 +0.4
102,332 - EX31_RS00460 0.68 +1.3
102,366 + EX31_RS00460 0.69 -2.8
102,366 + EX31_RS00460 0.69 -1.6
102,390 + EX31_RS00460 0.70 +1.9
102,504 + EX31_RS00460 0.73 -0.4
102,504 + EX31_RS00460 0.73 +0.9
102,504 + EX31_RS00460 0.73 -0.5
102,505 - EX31_RS00460 0.74 +0.4
102,505 - EX31_RS00460 0.74 +1.1
102,505 - EX31_RS00460 0.74 -0.1
102,587 - EX31_RS00460 0.76 +1.7
102,741 + EX31_RS00460 0.81 -1.3
102,742 - EX31_RS00460 0.81 +1.2
102,844 + EX31_RS00460 0.84 +0.1
102,845 - EX31_RS00460 0.84 +0.3
102,845 - EX31_RS00460 0.84 -0.4
102,845 - EX31_RS00460 0.84 +2.1
102,847 + EX31_RS00460 0.84 +1.4
102,848 - EX31_RS00460 0.85 +1.5
102,848 - EX31_RS00460 0.85 -0.3
102,848 - EX31_RS00460 0.85 +0.6
102,895 + EX31_RS00460 0.86 +0.4
102,900 + EX31_RS00460 0.86 -0.2
102,901 - EX31_RS00460 0.86 +0.1
102,962 + EX31_RS00460 0.88 +0.2
102,962 + EX31_RS00460 0.88 -0.4
102,962 + EX31_RS00460 0.88 +0.0
102,963 - EX31_RS00460 0.88 +0.5
102,963 - EX31_RS00460 0.88 +0.5
103,098 + -0.4
103,099 - -1.0
103,099 - -2.7
103,646 - EX31_RS00465 0.28 -0.1
103,780 + EX31_RS00465 0.39 -1.3
103,780 + EX31_RS00465 0.39 +0.5
103,780 + EX31_RS00465 0.39 -0.1
103,780 + EX31_RS00465 0.39 -0.7
103,780 + EX31_RS00465 0.39 -0.4
103,781 - EX31_RS00465 0.40 -1.0
103,781 - EX31_RS00465 0.40 -0.4
103,813 - EX31_RS00465 0.42 -1.3
103,856 + EX31_RS00465 0.46 -1.6
103,856 + EX31_RS00465 0.46 -1.1
103,857 - EX31_RS00465 0.46 -0.9
103,857 - EX31_RS00465 0.46 +0.7
103,857 - EX31_RS00465 0.46 -0.6
103,857 - EX31_RS00465 0.46 -2.2
104,181 - EX31_RS00465 0.75 +2.1
104,181 - EX31_RS00465 0.75 -3.1
104,181 - EX31_RS00465 0.75 +0.1
104,181 - EX31_RS00465 0.75 -0.1
104,191 - EX31_RS00465 0.76 +0.3
104,213 + EX31_RS00465 0.77 -1.5
104,268 + EX31_RS00465 0.82 -3.1
104,416 - +1.0
104,447 - -0.0
104,497 + +0.2
104,583 + -0.8
104,600 - -0.1
104,634 - -0.3
104,634 - +1.0
104,638 - -0.9
104,654 - EX31_RS00470 0.12 +0.1
104,817 - EX31_RS00470 0.45 -1.3
104,864 - EX31_RS00470 0.54 +1.6
104,898 + EX31_RS00470 0.61 +1.9
104,898 + EX31_RS00470 0.61 +0.8
104,939 + EX31_RS00470 0.70 -2.0
104,939 + EX31_RS00470 0.70 -1.5
104,939 + EX31_RS00470 0.70 -0.2
104,939 + EX31_RS00470 0.70 +0.6
104,940 - EX31_RS00470 0.70 -2.1
104,940 - EX31_RS00470 0.70 +0.7
104,940 - EX31_RS00470 0.70 +1.3
104,940 - EX31_RS00470 0.70 +0.6
104,949 + EX31_RS00470 0.72 -0.0
104,999 - EX31_RS00470 0.82 -0.0
105,064 + +0.2
105,125 + -1.1
105,126 - +0.6
105,127 + -0.5
105,335 - +0.4
105,335 - +0.6
105,335 - +0.8
105,436 + EX31_RS00475 0.13 -0.9
105,437 - EX31_RS00475 0.13 -2.0

Or see this region's nucleotide sequence