Experiment: NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS00350 and EX31_RS00355 are separated by 388 nucleotides EX31_RS00355 and EX31_RS00360 are separated by 100 nucleotides
EX31_RS00350: EX31_RS00350 - exodeoxyribonuclease X, at 73,298 to 73,960
_RS00350
EX31_RS00355: EX31_RS00355 - mandelate racemase, at 74,349 to 75,503
_RS00355
EX31_RS00360: EX31_RS00360 - ABC transporter substrate-binding protein, at 75,604 to 77,199
_RS00360
Position (kb) 74
75
76 Strain fitness (log2 ratio) -2
-1
0
1
2 at 73.361 kb on - strand at 73.380 kb on + strand, within EX31_RS00350 at 73.520 kb on - strand, within EX31_RS00350 at 73.540 kb on - strand, within EX31_RS00350 at 73.540 kb on - strand, within EX31_RS00350 at 73.540 kb on - strand, within EX31_RS00350 at 73.540 kb on - strand, within EX31_RS00350 at 73.540 kb on - strand, within EX31_RS00350 at 73.540 kb on - strand, within EX31_RS00350 at 73.540 kb on - strand, within EX31_RS00350 at 73.540 kb on - strand, within EX31_RS00350 at 73.626 kb on + strand, within EX31_RS00350 at 73.627 kb on - strand, within EX31_RS00350 at 73.627 kb on - strand, within EX31_RS00350 at 73.627 kb on - strand, within EX31_RS00350 at 73.731 kb on + strand, within EX31_RS00350 at 73.731 kb on + strand, within EX31_RS00350 at 73.731 kb on + strand, within EX31_RS00350 at 73.731 kb on + strand, within EX31_RS00350 at 73.732 kb on - strand, within EX31_RS00350 at 73.732 kb on - strand, within EX31_RS00350 at 73.732 kb on - strand, within EX31_RS00350 at 73.732 kb on - strand, within EX31_RS00350 at 73.735 kb on - strand, within EX31_RS00350 at 73.801 kb on + strand, within EX31_RS00350 at 73.925 kb on + strand at 73.926 kb on - strand at 73.926 kb on - strand at 73.949 kb on - strand at 73.960 kb on + strand at 73.961 kb on - strand at 73.992 kb on + strand at 74.001 kb on + strand at 74.048 kb on + strand at 74.068 kb on + strand at 74.068 kb on + strand at 74.069 kb on - strand at 74.069 kb on - strand at 74.069 kb on - strand at 74.083 kb on + strand at 74.092 kb on + strand at 74.179 kb on - strand at 74.301 kb on - strand at 74.301 kb on - strand at 74.342 kb on + strand at 74.357 kb on - strand at 74.385 kb on + strand at 74.560 kb on + strand, within EX31_RS00355 at 74.681 kb on + strand, within EX31_RS00355 at 74.926 kb on + strand, within EX31_RS00355 at 75.075 kb on + strand, within EX31_RS00355 at 75.075 kb on + strand, within EX31_RS00355 at 75.363 kb on + strand, within EX31_RS00355 at 75.381 kb on + strand, within EX31_RS00355 at 75.461 kb on + strand at 75.461 kb on + strand at 75.461 kb on + strand at 75.462 kb on - strand at 75.475 kb on + strand at 75.475 kb on + strand at 75.475 kb on + strand at 75.475 kb on + strand at 75.475 kb on + strand at 75.475 kb on + strand at 75.475 kb on + strand at 75.476 kb on - strand at 75.476 kb on - strand at 75.476 kb on - strand at 75.476 kb on - strand at 75.476 kb on - strand at 75.476 kb on - strand at 75.476 kb on - strand at 75.486 kb on - strand at 75.526 kb on - strand at 75.550 kb on + strand at 75.550 kb on + strand at 75.550 kb on + strand at 75.550 kb on + strand at 75.550 kb on + strand at 75.551 kb on - strand at 75.673 kb on - strand at 75.714 kb on + strand at 75.715 kb on - strand at 75.715 kb on - strand at 75.739 kb on + strand at 76.060 kb on + strand, within EX31_RS00360 at 76.060 kb on + strand, within EX31_RS00360 at 76.061 kb on - strand, within EX31_RS00360 at 76.237 kb on + strand, within EX31_RS00360 at 76.238 kb on - strand, within EX31_RS00360 at 76.238 kb on - strand, within EX31_RS00360 at 76.341 kb on + strand, within EX31_RS00360 at 76.341 kb on + strand, within EX31_RS00360 at 76.341 kb on + strand, within EX31_RS00360 at 76.420 kb on + strand, within EX31_RS00360 at 76.421 kb on - strand, within EX31_RS00360 at 76.421 kb on - strand, within EX31_RS00360 at 76.423 kb on + strand, within EX31_RS00360 at 76.486 kb on + strand, within EX31_RS00360 at 76.486 kb on + strand, within EX31_RS00360 at 76.487 kb on - strand, within EX31_RS00360
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum remove 73,361 - -0.5 73,380 + EX31_RS00350 0.12 -2.1 73,520 - EX31_RS00350 0.33 -1.1 73,540 - EX31_RS00350 0.37 +0.3 73,540 - EX31_RS00350 0.37 -0.1 73,540 - EX31_RS00350 0.37 -0.1 73,540 - EX31_RS00350 0.37 +0.2 73,540 - EX31_RS00350 0.37 +0.3 73,540 - EX31_RS00350 0.37 -0.3 73,540 - EX31_RS00350 0.37 +2.1 73,540 - EX31_RS00350 0.37 -0.8 73,626 + EX31_RS00350 0.49 -0.3 73,627 - EX31_RS00350 0.50 -1.4 73,627 - EX31_RS00350 0.50 -1.2 73,627 - EX31_RS00350 0.50 -0.3 73,731 + EX31_RS00350 0.65 +0.0 73,731 + EX31_RS00350 0.65 +0.8 73,731 + EX31_RS00350 0.65 -0.0 73,731 + EX31_RS00350 0.65 -0.5 73,732 - EX31_RS00350 0.65 +0.5 73,732 - EX31_RS00350 0.65 +0.7 73,732 - EX31_RS00350 0.65 +0.2 73,732 - EX31_RS00350 0.65 +0.6 73,735 - EX31_RS00350 0.66 -0.9 73,801 + EX31_RS00350 0.76 -0.1 73,925 + +0.6 73,926 - -2.3 73,926 - -1.5 73,949 - +0.9 73,960 + -0.2 73,961 - -0.8 73,992 + -0.3 74,001 + -0.8 74,048 + +0.1 74,068 + +0.1 74,068 + +0.1 74,069 - +0.3 74,069 - +0.1 74,069 - -0.4 74,083 + +0.1 74,092 + -1.5 74,179 - -2.6 74,301 - -0.3 74,301 - +0.7 74,342 + +0.2 74,357 - +0.4 74,385 + -0.0 74,560 + EX31_RS00355 0.18 -0.0 74,681 + EX31_RS00355 0.29 -0.1 74,926 + EX31_RS00355 0.50 +0.0 75,075 + EX31_RS00355 0.63 -2.3 75,075 + EX31_RS00355 0.63 -0.6 75,363 + EX31_RS00355 0.88 -0.5 75,381 + EX31_RS00355 0.89 -1.2 75,461 + -1.1 75,461 + +0.3 75,461 + +0.1 75,462 - +0.5 75,475 + -1.3 75,475 + -2.4 75,475 + +1.2 75,475 + -1.0 75,475 + +0.6 75,475 + -0.2 75,475 + +0.2 75,476 - -1.0 75,476 - -0.3 75,476 - +0.7 75,476 - -1.7 75,476 - +0.4 75,476 - +0.8 75,476 - -0.1 75,486 - -2.2 75,526 - -0.9 75,550 + -0.2 75,550 + -0.4 75,550 + +1.4 75,550 + -0.5 75,550 + +0.5 75,551 - -1.9 75,673 - -2.5 75,714 + -0.5 75,715 - +1.7 75,715 - -0.3 75,739 + +0.1 76,060 + EX31_RS00360 0.29 -0.5 76,060 + EX31_RS00360 0.29 +0.7 76,061 - EX31_RS00360 0.29 +0.2 76,237 + EX31_RS00360 0.40 -0.1 76,238 - EX31_RS00360 0.40 +0.8 76,238 - EX31_RS00360 0.40 +1.0 76,341 + EX31_RS00360 0.46 +0.4 76,341 + EX31_RS00360 0.46 +0.1 76,341 + EX31_RS00360 0.46 -0.3 76,420 + EX31_RS00360 0.51 +1.8 76,421 - EX31_RS00360 0.51 -0.7 76,421 - EX31_RS00360 0.51 -0.0 76,423 + EX31_RS00360 0.51 +1.8 76,486 + EX31_RS00360 0.55 +0.7 76,486 + EX31_RS00360 0.55 +0.4 76,487 - EX31_RS00360 0.55 +1.0
Or see this region's nucleotide sequence