Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS19730 and EX31_RS19735 overlap by 4 nucleotides EX31_RS19735 and EX31_RS19740 overlap by 4 nucleotides EX31_RS19740 and EX31_RS19745 overlap by 4 nucleotides
EX31_RS19730: EX31_RS19730 - c-type cytochrome biogenesis protein CcmI, at 579,802 to 581,016
_RS19730
EX31_RS19735: EX31_RS19735 - cytochrome c-type biogenesis protein CcmH, at 581,013 to 581,498
_RS19735
EX31_RS19740: EX31_RS19740 - DsbE family thiol:disulfide interchange protein, at 581,495 to 582,046
_RS19740
EX31_RS19745: EX31_RS19745 - heme lyase CcmF/NrfE family subunit, at 582,043 to 584,016
_RS19745
Position (kb) 581
582
583 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 580.496 kb on - strand, within EX31_RS19730 at 580.496 kb on - strand, within EX31_RS19730 at 580.496 kb on - strand, within EX31_RS19730 at 580.524 kb on + strand, within EX31_RS19730 at 580.524 kb on + strand, within EX31_RS19730 at 580.525 kb on - strand, within EX31_RS19730 at 580.528 kb on - strand, within EX31_RS19730 at 580.528 kb on - strand, within EX31_RS19730 at 580.568 kb on - strand, within EX31_RS19730 at 580.576 kb on + strand, within EX31_RS19730 at 580.577 kb on - strand, within EX31_RS19730 at 580.577 kb on - strand, within EX31_RS19730 at 580.577 kb on - strand, within EX31_RS19730 at 580.639 kb on - strand, within EX31_RS19730 at 580.639 kb on - strand, within EX31_RS19730 at 580.639 kb on - strand, within EX31_RS19730 at 580.639 kb on - strand, within EX31_RS19730 at 580.639 kb on - strand, within EX31_RS19730 at 580.694 kb on + strand, within EX31_RS19730 at 580.695 kb on - strand, within EX31_RS19730 at 580.695 kb on - strand, within EX31_RS19730 at 580.695 kb on - strand, within EX31_RS19730 at 580.695 kb on - strand, within EX31_RS19730 at 580.792 kb on - strand, within EX31_RS19730 at 580.893 kb on - strand, within EX31_RS19730 at 580.893 kb on - strand, within EX31_RS19730 at 580.893 kb on - strand, within EX31_RS19730 at 580.893 kb on - strand, within EX31_RS19730 at 580.893 kb on - strand, within EX31_RS19730 at 580.925 kb on + strand at 580.925 kb on + strand at 580.926 kb on - strand at 580.926 kb on - strand at 580.926 kb on - strand at 580.926 kb on - strand at 580.926 kb on - strand at 581.039 kb on + strand at 581.039 kb on + strand at 581.040 kb on - strand at 581.040 kb on - strand at 581.040 kb on - strand at 581.040 kb on - strand at 581.180 kb on + strand, within EX31_RS19735 at 581.180 kb on + strand, within EX31_RS19735 at 581.186 kb on + strand, within EX31_RS19735 at 581.186 kb on + strand, within EX31_RS19735 at 581.186 kb on + strand, within EX31_RS19735 at 581.186 kb on + strand, within EX31_RS19735 at 581.187 kb on - strand, within EX31_RS19735 at 581.187 kb on - strand, within EX31_RS19735 at 581.209 kb on + strand, within EX31_RS19735 at 581.209 kb on + strand, within EX31_RS19735 at 581.209 kb on + strand, within EX31_RS19735 at 581.210 kb on - strand, within EX31_RS19735 at 581.210 kb on - strand, within EX31_RS19735 at 581.240 kb on + strand, within EX31_RS19735 at 581.241 kb on - strand, within EX31_RS19735 at 581.241 kb on - strand, within EX31_RS19735 at 581.241 kb on - strand, within EX31_RS19735 at 581.241 kb on - strand, within EX31_RS19735 at 581.241 kb on - strand, within EX31_RS19735 at 581.241 kb on - strand, within EX31_RS19735 at 581.242 kb on + strand, within EX31_RS19735 at 581.242 kb on + strand, within EX31_RS19735 at 581.242 kb on + strand, within EX31_RS19735 at 581.242 kb on + strand, within EX31_RS19735 at 581.242 kb on + strand, within EX31_RS19735 at 581.243 kb on - strand, within EX31_RS19735 at 581.243 kb on - strand, within EX31_RS19735 at 581.243 kb on - strand, within EX31_RS19735 at 581.243 kb on - strand, within EX31_RS19735 at 581.243 kb on - strand, within EX31_RS19735 at 581.243 kb on - strand, within EX31_RS19735 at 581.243 kb on - strand, within EX31_RS19735 at 581.243 kb on - strand, within EX31_RS19735 at 581.243 kb on - strand, within EX31_RS19735 at 581.243 kb on - strand, within EX31_RS19735 at 581.276 kb on + strand, within EX31_RS19735 at 581.276 kb on + strand, within EX31_RS19735 at 581.276 kb on + strand, within EX31_RS19735 at 581.277 kb on - strand, within EX31_RS19735 at 581.336 kb on + strand, within EX31_RS19735 at 581.419 kb on + strand, within EX31_RS19735 at 581.419 kb on + strand, within EX31_RS19735 at 581.419 kb on + strand, within EX31_RS19735 at 581.419 kb on + strand, within EX31_RS19735 at 581.419 kb on + strand, within EX31_RS19735 at 581.419 kb on + strand, within EX31_RS19735 at 581.419 kb on + strand, within EX31_RS19735 at 581.420 kb on - strand, within EX31_RS19735 at 581.420 kb on - strand, within EX31_RS19735 at 581.420 kb on - strand, within EX31_RS19735 at 581.420 kb on - strand, within EX31_RS19735 at 581.420 kb on - strand, within EX31_RS19735 at 581.499 kb on - strand at 581.499 kb on - strand at 581.499 kb on - strand at 581.499 kb on - strand at 581.499 kb on - strand at 581.499 kb on - strand at 581.499 kb on - strand at 581.499 kb on - strand at 581.521 kb on - strand at 581.558 kb on + strand, within EX31_RS19740 at 581.558 kb on + strand, within EX31_RS19740 at 581.559 kb on - strand, within EX31_RS19740 at 581.559 kb on - strand, within EX31_RS19740 at 581.559 kb on - strand, within EX31_RS19740 at 581.559 kb on - strand, within EX31_RS19740 at 581.559 kb on - strand, within EX31_RS19740 at 581.626 kb on - strand, within EX31_RS19740 at 581.639 kb on + strand, within EX31_RS19740 at 581.679 kb on + strand, within EX31_RS19740 at 581.679 kb on + strand, within EX31_RS19740 at 581.679 kb on + strand, within EX31_RS19740 at 581.679 kb on + strand, within EX31_RS19740 at 581.679 kb on + strand, within EX31_RS19740 at 581.679 kb on + strand, within EX31_RS19740 at 581.680 kb on - strand, within EX31_RS19740 at 581.680 kb on - strand, within EX31_RS19740 at 581.680 kb on - strand, within EX31_RS19740 at 581.680 kb on - strand, within EX31_RS19740 at 581.680 kb on - strand, within EX31_RS19740 at 581.733 kb on + strand, within EX31_RS19740 at 581.733 kb on + strand, within EX31_RS19740 at 581.734 kb on - strand, within EX31_RS19740 at 581.734 kb on - strand, within EX31_RS19740 at 581.774 kb on - strand, within EX31_RS19740 at 581.781 kb on + strand, within EX31_RS19740 at 581.781 kb on + strand, within EX31_RS19740 at 581.782 kb on - strand, within EX31_RS19740 at 581.782 kb on - strand, within EX31_RS19740 at 581.782 kb on - strand, within EX31_RS19740 at 581.782 kb on - strand, within EX31_RS19740 at 581.782 kb on - strand, within EX31_RS19740 at 581.782 kb on - strand, within EX31_RS19740 at 581.868 kb on + strand, within EX31_RS19740 at 581.869 kb on - strand, within EX31_RS19740 at 582.025 kb on + strand at 582.038 kb on - strand at 582.114 kb on + strand at 582.115 kb on - strand at 582.115 kb on - strand at 582.115 kb on - strand at 582.115 kb on - strand at 582.139 kb on - strand at 582.179 kb on + strand at 582.180 kb on - strand at 582.180 kb on - strand at 582.180 kb on - strand at 582.183 kb on - strand at 582.183 kb on - strand at 582.233 kb on + strand at 582.234 kb on - strand at 582.234 kb on - strand at 582.297 kb on - strand, within EX31_RS19745 at 582.375 kb on - strand, within EX31_RS19745 at 582.375 kb on - strand, within EX31_RS19745 at 582.419 kb on + strand, within EX31_RS19745 at 582.420 kb on - strand, within EX31_RS19745 at 582.475 kb on - strand, within EX31_RS19745 at 582.477 kb on - strand, within EX31_RS19745 at 582.477 kb on - strand, within EX31_RS19745 at 582.667 kb on - strand, within EX31_RS19745 at 582.667 kb on - strand, within EX31_RS19745 at 582.713 kb on - strand, within EX31_RS19745 at 582.799 kb on + strand, within EX31_RS19745 at 582.800 kb on - strand, within EX31_RS19745 at 582.831 kb on + strand, within EX31_RS19745 at 582.832 kb on - strand, within EX31_RS19745 at 582.832 kb on - strand, within EX31_RS19745 at 582.840 kb on + strand, within EX31_RS19745 at 582.841 kb on - strand, within EX31_RS19745 at 582.867 kb on + strand, within EX31_RS19745 at 582.867 kb on + strand, within EX31_RS19745 at 582.868 kb on - strand, within EX31_RS19745 at 582.868 kb on - strand, within EX31_RS19745 at 582.946 kb on + strand, within EX31_RS19745 at 582.946 kb on + strand, within EX31_RS19745 at 582.947 kb on - strand, within EX31_RS19745 at 582.947 kb on - strand, within EX31_RS19745 at 582.947 kb on - strand, within EX31_RS19745 at 582.947 kb on - strand, within EX31_RS19745 at 582.947 kb on - strand, within EX31_RS19745 at 582.947 kb on - strand, within EX31_RS19745 at 582.947 kb on - strand, within EX31_RS19745 at 582.947 kb on - strand, within EX31_RS19745 at 582.965 kb on + strand, within EX31_RS19745 at 582.965 kb on + strand, within EX31_RS19745 at 582.966 kb on - strand, within EX31_RS19745 at 582.966 kb on - strand, within EX31_RS19745 at 583.015 kb on - strand, within EX31_RS19745 at 583.015 kb on - strand, within EX31_RS19745 at 583.015 kb on - strand, within EX31_RS19745 at 583.015 kb on - strand, within EX31_RS19745 at 583.021 kb on - strand, within EX31_RS19745 at 583.021 kb on - strand, within EX31_RS19745 at 583.028 kb on + strand, within EX31_RS19745
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 580,496 - EX31_RS19730 0.57 +1.5 580,496 - EX31_RS19730 0.57 -0.1 580,496 - EX31_RS19730 0.57 +0.1 580,524 + EX31_RS19730 0.59 -0.1 580,524 + EX31_RS19730 0.59 +0.1 580,525 - EX31_RS19730 0.60 +0.5 580,528 - EX31_RS19730 0.60 -1.7 580,528 - EX31_RS19730 0.60 +0.5 580,568 - EX31_RS19730 0.63 -1.6 580,576 + EX31_RS19730 0.64 +0.5 580,577 - EX31_RS19730 0.64 -0.4 580,577 - EX31_RS19730 0.64 -0.0 580,577 - EX31_RS19730 0.64 +0.5 580,639 - EX31_RS19730 0.69 +0.6 580,639 - EX31_RS19730 0.69 +0.3 580,639 - EX31_RS19730 0.69 -1.3 580,639 - EX31_RS19730 0.69 -0.0 580,639 - EX31_RS19730 0.69 -2.4 580,694 + EX31_RS19730 0.73 -2.1 580,695 - EX31_RS19730 0.73 +1.0 580,695 - EX31_RS19730 0.73 -0.1 580,695 - EX31_RS19730 0.73 +0.6 580,695 - EX31_RS19730 0.73 -0.1 580,792 - EX31_RS19730 0.81 +0.6 580,893 - EX31_RS19730 0.90 -0.2 580,893 - EX31_RS19730 0.90 +0.5 580,893 - EX31_RS19730 0.90 -0.4 580,893 - EX31_RS19730 0.90 -0.9 580,893 - EX31_RS19730 0.90 -0.0 580,925 + +0.2 580,925 + +0.6 580,926 - -0.1 580,926 - -1.4 580,926 - +0.6 580,926 - -1.2 580,926 - +0.1 581,039 + -0.4 581,039 + -0.7 581,040 - -0.5 581,040 - -0.6 581,040 - +0.1 581,040 - -0.2 581,180 + EX31_RS19735 0.34 +1.4 581,180 + EX31_RS19735 0.34 +0.8 581,186 + EX31_RS19735 0.36 +0.5 581,186 + EX31_RS19735 0.36 +0.1 581,186 + EX31_RS19735 0.36 -0.2 581,186 + EX31_RS19735 0.36 -0.0 581,187 - EX31_RS19735 0.36 +0.4 581,187 - EX31_RS19735 0.36 -1.7 581,209 + EX31_RS19735 0.40 +0.3 581,209 + EX31_RS19735 0.40 -1.4 581,209 + EX31_RS19735 0.40 +0.7 581,210 - EX31_RS19735 0.41 +0.7 581,210 - EX31_RS19735 0.41 +0.3 581,240 + EX31_RS19735 0.47 -0.4 581,241 - EX31_RS19735 0.47 -0.2 581,241 - EX31_RS19735 0.47 +1.8 581,241 - EX31_RS19735 0.47 -0.3 581,241 - EX31_RS19735 0.47 -0.1 581,241 - EX31_RS19735 0.47 -0.6 581,241 - EX31_RS19735 0.47 +0.4 581,242 + EX31_RS19735 0.47 -1.0 581,242 + EX31_RS19735 0.47 -0.6 581,242 + EX31_RS19735 0.47 -0.9 581,242 + EX31_RS19735 0.47 +1.4 581,242 + EX31_RS19735 0.47 +1.6 581,243 - EX31_RS19735 0.47 -0.2 581,243 - EX31_RS19735 0.47 -0.1 581,243 - EX31_RS19735 0.47 -1.6 581,243 - EX31_RS19735 0.47 +0.1 581,243 - EX31_RS19735 0.47 -0.0 581,243 - EX31_RS19735 0.47 -0.3 581,243 - EX31_RS19735 0.47 -0.9 581,243 - EX31_RS19735 0.47 +0.6 581,243 - EX31_RS19735 0.47 -0.8 581,243 - EX31_RS19735 0.47 -3.3 581,276 + EX31_RS19735 0.54 +1.4 581,276 + EX31_RS19735 0.54 +0.1 581,276 + EX31_RS19735 0.54 -1.3 581,277 - EX31_RS19735 0.54 +0.0 581,336 + EX31_RS19735 0.66 -0.3 581,419 + EX31_RS19735 0.84 -0.7 581,419 + EX31_RS19735 0.84 +0.2 581,419 + EX31_RS19735 0.84 -0.4 581,419 + EX31_RS19735 0.84 +1.3 581,419 + EX31_RS19735 0.84 -0.9 581,419 + EX31_RS19735 0.84 -0.7 581,419 + EX31_RS19735 0.84 +0.9 581,420 - EX31_RS19735 0.84 -0.2 581,420 - EX31_RS19735 0.84 +1.0 581,420 - EX31_RS19735 0.84 +0.4 581,420 - EX31_RS19735 0.84 +0.1 581,420 - EX31_RS19735 0.84 +0.7 581,499 - +0.5 581,499 - +0.5 581,499 - -0.4 581,499 - -0.4 581,499 - +0.8 581,499 - +0.9 581,499 - -0.0 581,499 - +0.1 581,521 - -0.1 581,558 + EX31_RS19740 0.11 -0.1 581,558 + EX31_RS19740 0.11 +0.3 581,559 - EX31_RS19740 0.12 +0.1 581,559 - EX31_RS19740 0.12 +2.0 581,559 - EX31_RS19740 0.12 -0.1 581,559 - EX31_RS19740 0.12 +0.4 581,559 - EX31_RS19740 0.12 +0.0 581,626 - EX31_RS19740 0.24 -1.1 581,639 + EX31_RS19740 0.26 -1.9 581,679 + EX31_RS19740 0.33 -0.4 581,679 + EX31_RS19740 0.33 +0.3 581,679 + EX31_RS19740 0.33 +0.5 581,679 + EX31_RS19740 0.33 +0.0 581,679 + EX31_RS19740 0.33 -0.4 581,679 + EX31_RS19740 0.33 +0.6 581,680 - EX31_RS19740 0.34 +0.9 581,680 - EX31_RS19740 0.34 -0.1 581,680 - EX31_RS19740 0.34 -0.7 581,680 - EX31_RS19740 0.34 +0.1 581,680 - EX31_RS19740 0.34 +0.2 581,733 + EX31_RS19740 0.43 -0.4 581,733 + EX31_RS19740 0.43 +0.8 581,734 - EX31_RS19740 0.43 +1.0 581,734 - EX31_RS19740 0.43 -0.7 581,774 - EX31_RS19740 0.51 -0.5 581,781 + EX31_RS19740 0.52 -0.7 581,781 + EX31_RS19740 0.52 -0.0 581,782 - EX31_RS19740 0.52 -0.1 581,782 - EX31_RS19740 0.52 +0.2 581,782 - EX31_RS19740 0.52 +1.3 581,782 - EX31_RS19740 0.52 +0.6 581,782 - EX31_RS19740 0.52 +0.1 581,782 - EX31_RS19740 0.52 +0.1 581,868 + EX31_RS19740 0.68 +1.0 581,869 - EX31_RS19740 0.68 +0.3 582,025 + +0.1 582,038 - +0.0 582,114 + -0.5 582,115 - +0.5 582,115 - +0.0 582,115 - +0.5 582,115 - -0.2 582,139 - +0.1 582,179 + -0.4 582,180 - +0.2 582,180 - -0.4 582,180 - +1.0 582,183 - -2.5 582,183 - -0.1 582,233 + -0.6 582,234 - +1.6 582,234 - -1.6 582,297 - EX31_RS19745 0.13 -0.0 582,375 - EX31_RS19745 0.17 +0.2 582,375 - EX31_RS19745 0.17 +1.2 582,419 + EX31_RS19745 0.19 +0.0 582,420 - EX31_RS19745 0.19 -0.6 582,475 - EX31_RS19745 0.22 -0.9 582,477 - EX31_RS19745 0.22 +0.3 582,477 - EX31_RS19745 0.22 -0.0 582,667 - EX31_RS19745 0.32 +0.2 582,667 - EX31_RS19745 0.32 +0.3 582,713 - EX31_RS19745 0.34 -1.4 582,799 + EX31_RS19745 0.38 +0.3 582,800 - EX31_RS19745 0.38 +0.0 582,831 + EX31_RS19745 0.40 -1.8 582,832 - EX31_RS19745 0.40 +0.8 582,832 - EX31_RS19745 0.40 +0.2 582,840 + EX31_RS19745 0.40 +0.6 582,841 - EX31_RS19745 0.40 -0.4 582,867 + EX31_RS19745 0.42 +0.0 582,867 + EX31_RS19745 0.42 -1.3 582,868 - EX31_RS19745 0.42 -0.3 582,868 - EX31_RS19745 0.42 -0.1 582,946 + EX31_RS19745 0.46 -1.0 582,946 + EX31_RS19745 0.46 -1.9 582,947 - EX31_RS19745 0.46 -0.1 582,947 - EX31_RS19745 0.46 +0.3 582,947 - EX31_RS19745 0.46 -1.3 582,947 - EX31_RS19745 0.46 -0.2 582,947 - EX31_RS19745 0.46 -1.1 582,947 - EX31_RS19745 0.46 -2.3 582,947 - EX31_RS19745 0.46 -1.0 582,947 - EX31_RS19745 0.46 +0.1 582,965 + EX31_RS19745 0.47 -0.9 582,965 + EX31_RS19745 0.47 -0.3 582,966 - EX31_RS19745 0.47 -0.2 582,966 - EX31_RS19745 0.47 +0.2 583,015 - EX31_RS19745 0.49 -0.3 583,015 - EX31_RS19745 0.49 -0.2 583,015 - EX31_RS19745 0.49 -0.9 583,015 - EX31_RS19745 0.49 -0.1 583,021 - EX31_RS19745 0.50 -0.3 583,021 - EX31_RS19745 0.50 +0.3 583,028 + EX31_RS19745 0.50 +0.1
Or see this region's nucleotide sequence