Experiment: NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS19055 and EX31_RS19060 are separated by 90 nucleotides EX31_RS19060 and EX31_RS19065 are separated by 106 nucleotides
EX31_RS19055: EX31_RS19055 - YeiH family putative sulfate export transporter, at 402,495 to 403,601
_RS19055
EX31_RS19060: EX31_RS19060 - deoxyribonuclease IV, at 403,692 to 404,558
_RS19060
EX31_RS19065: EX31_RS19065 - PTS fructose transporter subunit IIBC, at 404,665 to 406,365
_RS19065
Position (kb) 403
404
405 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 402.708 kb on - strand, within EX31_RS19055 at 402.712 kb on + strand, within EX31_RS19055 at 402.712 kb on + strand, within EX31_RS19055 at 402.712 kb on + strand, within EX31_RS19055 at 402.713 kb on - strand, within EX31_RS19055 at 402.715 kb on - strand, within EX31_RS19055 at 402.792 kb on + strand, within EX31_RS19055 at 403.044 kb on - strand, within EX31_RS19055 at 403.072 kb on - strand, within EX31_RS19055 at 403.101 kb on + strand, within EX31_RS19055 at 403.102 kb on - strand, within EX31_RS19055 at 403.118 kb on + strand, within EX31_RS19055 at 403.140 kb on + strand, within EX31_RS19055 at 403.140 kb on + strand, within EX31_RS19055 at 403.140 kb on + strand, within EX31_RS19055 at 403.140 kb on + strand, within EX31_RS19055 at 403.140 kb on + strand, within EX31_RS19055 at 403.141 kb on - strand, within EX31_RS19055 at 403.292 kb on + strand, within EX31_RS19055 at 403.292 kb on + strand, within EX31_RS19055 at 403.292 kb on + strand, within EX31_RS19055 at 403.293 kb on - strand, within EX31_RS19055 at 403.300 kb on + strand, within EX31_RS19055 at 403.300 kb on + strand, within EX31_RS19055 at 403.300 kb on + strand, within EX31_RS19055 at 403.300 kb on + strand, within EX31_RS19055 at 403.334 kb on + strand, within EX31_RS19055 at 403.334 kb on + strand, within EX31_RS19055 at 403.336 kb on + strand, within EX31_RS19055 at 403.336 kb on + strand, within EX31_RS19055 at 403.336 kb on + strand, within EX31_RS19055 at 403.336 kb on + strand, within EX31_RS19055 at 403.336 kb on + strand, within EX31_RS19055 at 403.336 kb on + strand, within EX31_RS19055 at 403.336 kb on + strand, within EX31_RS19055 at 403.336 kb on + strand, within EX31_RS19055 at 403.336 kb on + strand, within EX31_RS19055 at 403.337 kb on - strand, within EX31_RS19055 at 403.337 kb on - strand, within EX31_RS19055 at 403.337 kb on - strand, within EX31_RS19055 at 403.337 kb on - strand, within EX31_RS19055 at 403.337 kb on - strand, within EX31_RS19055 at 403.337 kb on - strand, within EX31_RS19055 at 403.337 kb on - strand, within EX31_RS19055 at 403.337 kb on - strand, within EX31_RS19055 at 403.337 kb on - strand, within EX31_RS19055 at 403.337 kb on - strand, within EX31_RS19055 at 403.337 kb on - strand, within EX31_RS19055 at 403.337 kb on - strand, within EX31_RS19055 at 403.337 kb on - strand, within EX31_RS19055 at 403.337 kb on - strand, within EX31_RS19055 at 403.337 kb on - strand, within EX31_RS19055 at 403.337 kb on - strand, within EX31_RS19055 at 403.337 kb on - strand, within EX31_RS19055 at 403.337 kb on - strand, within EX31_RS19055 at 403.337 kb on - strand, within EX31_RS19055 at 403.340 kb on + strand, within EX31_RS19055 at 403.340 kb on + strand, within EX31_RS19055 at 403.340 kb on + strand, within EX31_RS19055 at 403.341 kb on - strand, within EX31_RS19055 at 403.341 kb on - strand, within EX31_RS19055 at 403.341 kb on - strand, within EX31_RS19055 at 403.428 kb on - strand, within EX31_RS19055 at 403.542 kb on - strand at 403.602 kb on + strand at 403.603 kb on - strand at 403.614 kb on + strand at 403.677 kb on - strand at 403.866 kb on + strand, within EX31_RS19060 at 403.867 kb on - strand, within EX31_RS19060 at 403.905 kb on + strand, within EX31_RS19060 at 403.905 kb on + strand, within EX31_RS19060 at 403.906 kb on - strand, within EX31_RS19060 at 403.906 kb on - strand, within EX31_RS19060 at 404.051 kb on + strand, within EX31_RS19060 at 404.051 kb on + strand, within EX31_RS19060 at 404.052 kb on - strand, within EX31_RS19060 at 404.183 kb on + strand, within EX31_RS19060 at 404.184 kb on - strand, within EX31_RS19060 at 404.322 kb on + strand, within EX31_RS19060 at 404.333 kb on + strand, within EX31_RS19060 at 404.333 kb on + strand, within EX31_RS19060 at 404.333 kb on + strand, within EX31_RS19060 at 404.334 kb on - strand, within EX31_RS19060 at 404.419 kb on + strand, within EX31_RS19060 at 404.419 kb on + strand, within EX31_RS19060 at 404.419 kb on + strand, within EX31_RS19060 at 404.419 kb on + strand, within EX31_RS19060 at 404.419 kb on + strand, within EX31_RS19060 at 404.420 kb on - strand, within EX31_RS19060 at 404.423 kb on + strand, within EX31_RS19060 at 404.423 kb on + strand, within EX31_RS19060 at 404.424 kb on - strand, within EX31_RS19060 at 404.556 kb on + strand at 404.557 kb on - strand at 404.660 kb on + strand at 404.666 kb on + strand at 404.667 kb on - strand at 404.717 kb on + strand at 404.941 kb on - strand, within EX31_RS19065 at 405.000 kb on + strand, within EX31_RS19065 at 405.000 kb on + strand, within EX31_RS19065 at 405.000 kb on + strand, within EX31_RS19065 at 405.000 kb on + strand, within EX31_RS19065 at 405.001 kb on - strand, within EX31_RS19065 at 405.001 kb on - strand, within EX31_RS19065 at 405.080 kb on + strand, within EX31_RS19065 at 405.080 kb on + strand, within EX31_RS19065 at 405.080 kb on + strand, within EX31_RS19065 at 405.117 kb on - strand, within EX31_RS19065 at 405.151 kb on - strand, within EX31_RS19065 at 405.151 kb on - strand, within EX31_RS19065 at 405.151 kb on - strand, within EX31_RS19065 at 405.253 kb on - strand, within EX31_RS19065 at 405.263 kb on + strand, within EX31_RS19065 at 405.263 kb on + strand, within EX31_RS19065 at 405.263 kb on + strand, within EX31_RS19065 at 405.263 kb on + strand, within EX31_RS19065 at 405.263 kb on + strand, within EX31_RS19065 at 405.263 kb on + strand, within EX31_RS19065 at 405.264 kb on - strand, within EX31_RS19065 at 405.264 kb on - strand, within EX31_RS19065 at 405.264 kb on - strand, within EX31_RS19065 at 405.315 kb on + strand, within EX31_RS19065 at 405.316 kb on - strand, within EX31_RS19065 at 405.316 kb on - strand, within EX31_RS19065 at 405.316 kb on - strand, within EX31_RS19065 at 405.333 kb on + strand, within EX31_RS19065 at 405.333 kb on + strand, within EX31_RS19065 at 405.333 kb on + strand, within EX31_RS19065 at 405.377 kb on + strand, within EX31_RS19065 at 405.378 kb on - strand, within EX31_RS19065 at 405.378 kb on - strand, within EX31_RS19065 at 405.378 kb on - strand, within EX31_RS19065 at 405.378 kb on - strand, within EX31_RS19065 at 405.403 kb on - strand, within EX31_RS19065 at 405.403 kb on - strand, within EX31_RS19065 at 405.484 kb on - strand, within EX31_RS19065
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum remove 402,708 - EX31_RS19055 0.19 -0.4 402,712 + EX31_RS19055 0.20 -0.5 402,712 + EX31_RS19055 0.20 -0.5 402,712 + EX31_RS19055 0.20 +0.1 402,713 - EX31_RS19055 0.20 -0.5 402,715 - EX31_RS19055 0.20 +1.5 402,792 + EX31_RS19055 0.27 +0.4 403,044 - EX31_RS19055 0.50 +2.0 403,072 - EX31_RS19055 0.52 +0.3 403,101 + EX31_RS19055 0.55 -1.0 403,102 - EX31_RS19055 0.55 +0.1 403,118 + EX31_RS19055 0.56 +0.4 403,140 + EX31_RS19055 0.58 +0.4 403,140 + EX31_RS19055 0.58 +0.4 403,140 + EX31_RS19055 0.58 +0.0 403,140 + EX31_RS19055 0.58 +0.1 403,140 + EX31_RS19055 0.58 +0.5 403,141 - EX31_RS19055 0.58 -0.4 403,292 + EX31_RS19055 0.72 +0.3 403,292 + EX31_RS19055 0.72 +1.1 403,292 + EX31_RS19055 0.72 -0.2 403,293 - EX31_RS19055 0.72 -0.6 403,300 + EX31_RS19055 0.73 -0.6 403,300 + EX31_RS19055 0.73 +0.1 403,300 + EX31_RS19055 0.73 +0.2 403,300 + EX31_RS19055 0.73 +0.4 403,334 + EX31_RS19055 0.76 -0.0 403,334 + EX31_RS19055 0.76 +0.3 403,336 + EX31_RS19055 0.76 -0.2 403,336 + EX31_RS19055 0.76 -0.0 403,336 + EX31_RS19055 0.76 +0.6 403,336 + EX31_RS19055 0.76 -0.2 403,336 + EX31_RS19055 0.76 +0.2 403,336 + EX31_RS19055 0.76 +0.4 403,336 + EX31_RS19055 0.76 +0.1 403,336 + EX31_RS19055 0.76 -0.0 403,336 + EX31_RS19055 0.76 +0.8 403,337 - EX31_RS19055 0.76 +0.1 403,337 - EX31_RS19055 0.76 +1.5 403,337 - EX31_RS19055 0.76 -1.8 403,337 - EX31_RS19055 0.76 +0.3 403,337 - EX31_RS19055 0.76 -0.7 403,337 - EX31_RS19055 0.76 +0.3 403,337 - EX31_RS19055 0.76 -1.6 403,337 - EX31_RS19055 0.76 +0.4 403,337 - EX31_RS19055 0.76 -0.3 403,337 - EX31_RS19055 0.76 -2.2 403,337 - EX31_RS19055 0.76 +0.3 403,337 - EX31_RS19055 0.76 +2.0 403,337 - EX31_RS19055 0.76 +1.0 403,337 - EX31_RS19055 0.76 +1.5 403,337 - EX31_RS19055 0.76 -0.3 403,337 - EX31_RS19055 0.76 +0.9 403,337 - EX31_RS19055 0.76 +0.2 403,337 - EX31_RS19055 0.76 +0.6 403,337 - EX31_RS19055 0.76 -0.6 403,340 + EX31_RS19055 0.76 -0.8 403,340 + EX31_RS19055 0.76 +0.2 403,340 + EX31_RS19055 0.76 -1.2 403,341 - EX31_RS19055 0.76 +1.9 403,341 - EX31_RS19055 0.76 +0.1 403,341 - EX31_RS19055 0.76 +0.1 403,428 - EX31_RS19055 0.84 -0.6 403,542 - +0.6 403,602 + +0.0 403,603 - +0.2 403,614 + -0.1 403,677 - -1.4 403,866 + EX31_RS19060 0.20 -0.4 403,867 - EX31_RS19060 0.20 +0.3 403,905 + EX31_RS19060 0.25 +0.1 403,905 + EX31_RS19060 0.25 -1.2 403,906 - EX31_RS19060 0.25 -0.4 403,906 - EX31_RS19060 0.25 -1.1 404,051 + EX31_RS19060 0.41 -0.3 404,051 + EX31_RS19060 0.41 -0.6 404,052 - EX31_RS19060 0.42 +0.6 404,183 + EX31_RS19060 0.57 -0.9 404,184 - EX31_RS19060 0.57 +1.2 404,322 + EX31_RS19060 0.73 -0.4 404,333 + EX31_RS19060 0.74 -0.5 404,333 + EX31_RS19060 0.74 +0.4 404,333 + EX31_RS19060 0.74 -0.9 404,334 - EX31_RS19060 0.74 -0.6 404,419 + EX31_RS19060 0.84 -0.4 404,419 + EX31_RS19060 0.84 -0.1 404,419 + EX31_RS19060 0.84 -0.9 404,419 + EX31_RS19060 0.84 +0.1 404,419 + EX31_RS19060 0.84 -1.2 404,420 - EX31_RS19060 0.84 -1.1 404,423 + EX31_RS19060 0.84 -0.5 404,423 + EX31_RS19060 0.84 +0.3 404,424 - EX31_RS19060 0.84 -2.9 404,556 + +0.2 404,557 - +0.4 404,660 + -0.3 404,666 + +0.3 404,667 - +0.3 404,717 + +1.5 404,941 - EX31_RS19065 0.16 +0.6 405,000 + EX31_RS19065 0.20 +0.3 405,000 + EX31_RS19065 0.20 +0.4 405,000 + EX31_RS19065 0.20 +0.2 405,000 + EX31_RS19065 0.20 -0.9 405,001 - EX31_RS19065 0.20 -0.3 405,001 - EX31_RS19065 0.20 +0.1 405,080 + EX31_RS19065 0.24 +0.3 405,080 + EX31_RS19065 0.24 +1.1 405,080 + EX31_RS19065 0.24 -1.3 405,117 - EX31_RS19065 0.27 -0.1 405,151 - EX31_RS19065 0.29 -1.1 405,151 - EX31_RS19065 0.29 +0.0 405,151 - EX31_RS19065 0.29 +0.5 405,253 - EX31_RS19065 0.35 +1.0 405,263 + EX31_RS19065 0.35 -0.0 405,263 + EX31_RS19065 0.35 -0.2 405,263 + EX31_RS19065 0.35 +0.3 405,263 + EX31_RS19065 0.35 +0.2 405,263 + EX31_RS19065 0.35 -0.9 405,263 + EX31_RS19065 0.35 -1.7 405,264 - EX31_RS19065 0.35 -1.2 405,264 - EX31_RS19065 0.35 -0.5 405,264 - EX31_RS19065 0.35 +0.4 405,315 + EX31_RS19065 0.38 -0.3 405,316 - EX31_RS19065 0.38 -0.1 405,316 - EX31_RS19065 0.38 -0.8 405,316 - EX31_RS19065 0.38 -0.5 405,333 + EX31_RS19065 0.39 -0.6 405,333 + EX31_RS19065 0.39 -0.9 405,333 + EX31_RS19065 0.39 +0.6 405,377 + EX31_RS19065 0.42 -0.6 405,378 - EX31_RS19065 0.42 -0.1 405,378 - EX31_RS19065 0.42 -0.0 405,378 - EX31_RS19065 0.42 -1.1 405,378 - EX31_RS19065 0.42 -0.2 405,403 - EX31_RS19065 0.43 +0.0 405,403 - EX31_RS19065 0.43 -0.8 405,484 - EX31_RS19065 0.48 -1.0
Or see this region's nucleotide sequence